| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
Click here to switch to the map view.
The map label for this gene is 91781766
Identifier: 91781766
GI number: 91781766
Start: 423153
End: 423962
Strand: Reverse
Name: 91781766
Synonym: Bxe_A4079
Alternate gene names: NA
Gene position: 423962-423153 (Counterclockwise)
Preceding gene: 91781767
Following gene: 91781764
Centisome position: 8.66
GC content: 66.91
Gene sequence:
>810_bases ATGAATCAGGAACGCGTCTTCAGCTTGCGCAACCCGTGGTTCACGTTGAGCGTGGGCGGCACGATTGCGATTGCCGTCGT GTCGATACTGATCGGCTTCATCTGGCTGCCTTCGGCGAACAACGCGTTCGGCGACCGCGGCCTGTGGGCGACGATCTGCA GCGCCGCGGGCGCGCCGTCGAGCTGGTATGGCGGCACCAATCTCACCGGCCCGGCGCCGAGCGAAGTGGTGGTCCTGCCG CCTTTGCGGCGCGTGCGCGCCGACGCGATTTCGATCGGCCGCGGCGCGACCATTGCCACGCAGAATTGCTCGATGTGTCA CGGCGTGCTGGGCACGGTGCAGGTGACGGCGCCCGCACTCGCCGGGCAGTATGCCGACGTGATCTATAAAGAGTTGCGCG ACTACCAGACCGGCCTGCGCCAGAACGCGATCATGCAACCGATCATCGCGGCGCGCAGCGACCAGGATCTGCACGATCTG GCCGCTTACTATGCGTCCCTGCCAGGAGCGCCCGCGGCGGGGGTGCCGGCCACCGGCACGGAACCGGATGCGAATGCCGT GAAGCTTGCCATGCAGGGCGATCCGCAGCGCAATATCGCGCCTTGCGCCGCATGCCACGGCCAACTGGATCGCAAGGGTG CGGCGCCGTGGCTGGGCGGACAGTCGTCGGTCTATCTGGCGGCGCAGTTGCGCGCCTTTGCTTCCGGCGCGCGGCGCAAC GACATCAACGAACAGATGCGCAACGTCGCGCGGCGGATGACGCCTGCTGAGATCGACAGCCTGGCCAGGTACTACGCGGC CATGCAGTAA
Upstream 100 bases:
>100_bases TGATGATCGGCCTCACGGTCGTCAACTACAGTGTGCCGATCGTGCAGTTGCTCAGATTGCCGCAGACCTCCGTGCCGGCA GTTGTCGTCGGAGCACAGCG
Downstream 100 bases:
>100_bases CGGATGTGCTGGCTGCGTTGCGGTGCAAGTTCCAGATACCGGATGCGTCGCAACGCCGAACGTTCACCGCTATCAGGCCG TAGCGAACTCATCCGCATCG
Product: putative cytochrome c, class I
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 269; Mature: 269
Protein sequence:
>269_residues MNQERVFSLRNPWFTLSVGGTIAIAVVSILIGFIWLPSANNAFGDRGLWATICSAAGAPSSWYGGTNLTGPAPSEVVVLP PLRRVRADAISIGRGATIATQNCSMCHGVLGTVQVTAPALAGQYADVIYKELRDYQTGLRQNAIMQPIIAARSDQDLHDL AAYYASLPGAPAAGVPATGTEPDANAVKLAMQGDPQRNIAPCAACHGQLDRKGAAPWLGGQSSVYLAAQLRAFASGARRN DINEQMRNVARRMTPAEIDSLARYYAAMQ
Sequences:
>Translated_269_residues MNQERVFSLRNPWFTLSVGGTIAIAVVSILIGFIWLPSANNAFGDRGLWATICSAAGAPSSWYGGTNLTGPAPSEVVVLP PLRRVRADAISIGRGATIATQNCSMCHGVLGTVQVTAPALAGQYADVIYKELRDYQTGLRQNAIMQPIIAARSDQDLHDL AAYYASLPGAPAAGVPATGTEPDANAVKLAMQGDPQRNIAPCAACHGQLDRKGAAPWLGGQSSVYLAAQLRAFASGARRN DINEQMRNVARRMTPAEIDSLARYYAAMQ >Mature_269_residues MNQERVFSLRNPWFTLSVGGTIAIAVVSILIGFIWLPSANNAFGDRGLWATICSAAGAPSSWYGGTNLTGPAPSEVVVLP PLRRVRADAISIGRGATIATQNCSMCHGVLGTVQVTAPALAGQYADVIYKELRDYQTGLRQNAIMQPIIAARSDQDLHDL AAYYASLPGAPAAGVPATGTEPDANAVKLAMQGDPQRNIAPCAACHGQLDRKGAAPWLGGQSSVYLAAQLRAFASGARRN DINEQMRNVARRMTPAEIDSLARYYAAMQ
Specific function: Diheme, high potential cytochrome c believed to be an intermediate electron donor in an anaerobic electron transport chain [H]
COG id: COG2863
COG function: function code C; Cytochrome c553
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 cytochrome c domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009056 - InterPro: IPR003088 - InterPro: IPR008168 [H]
Pfam domain/function: PF00034 Cytochrom_C [H]
EC number: NA
Molecular weight: Translated: 28498; Mature: 28498
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQERVFSLRNPWFTLSVGGTIAIAVVSILIGFIWLPSANNAFGDRGLWATICSAAGAPS CCCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC SWYGGTNLTGPAPSEVVVLPPLRRVRADAISIGRGATIATQNCSMCHGVLGTVQVTAPAL CCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHEEHHHHH AGQYADVIYKELRDYQTGLRQNAIMQPIIAARSDQDLHDLAAYYASLPGAPAAGVPATGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC EPDANAVKLAMQGDPQRNIAPCAACHGQLDRKGAAPWLGGQSSVYLAAQLRAFASGARRN CCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHCC DINEQMRNVARRMTPAEIDSLARYYAAMQ HHHHHHHHHHHHCCHHHHHHHHHHHHHCC >Mature Secondary Structure MNQERVFSLRNPWFTLSVGGTIAIAVVSILIGFIWLPSANNAFGDRGLWATICSAAGAPS CCCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC SWYGGTNLTGPAPSEVVVLPPLRRVRADAISIGRGATIATQNCSMCHGVLGTVQVTAPAL CCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHEEHHHHH AGQYADVIYKELRDYQTGLRQNAIMQPIIAARSDQDLHDLAAYYASLPGAPAAGVPATGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC EPDANAVKLAMQGDPQRNIAPCAACHGQLDRKGAAPWLGGQSSVYLAAQLRAFASGARRN CCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHCC DINEQMRNVARRMTPAEIDSLARYYAAMQ HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA