| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is purU [H]
Identifier: 91781734
GI number: 91781734
Start: 383922
End: 384791
Strand: Direct
Name: purU [H]
Synonym: Bxe_A4112
Alternate gene names: 91781734
Gene position: 383922-384791 (Clockwise)
Preceding gene: 91781733
Following gene: 91781738
Centisome position: 7.84
GC content: 62.07
Gene sequence:
>870_bases ATGTCGACCGATCACAGCTTTATCCTCAAACTGTCGTGCGCCGACCGGCCCGGCATCGTTCACGCCGTGTCGGGCTTTCT GTTCGAGCGTGGCAGCAATATTCTCGACTCCGCGCAGTTCGGCGACAGCCGCACCGGCGAGTTCTTCATGCGCGTGCATT TCCAGCAGGTGGGCGGTGATCCGGGTCTGGAGGCGTTGCGCGCGTCGTTCGCGACGCTCGCAGAACAGTTCGGCATGCGC TGGGAGTTGCACGACGCGTCGGTCAAGCCGCGCGTGGTGATCATGGTGTCGAAGATCGGCCATTGCCTGAACGATCTGCT GTTCCGCTACCGCACCGGCCAGTTGGGTATCGAGATCGCGGCGATCATCTCGAACCACAAGGAGTTCTATCAACTCGCCG CCAGCTACGACATTCCGTTCCATCACTTCCCGCTGATGGGCGCCACGCCCGAGGCGAAAGCCGCACAGGAAGCGCGCGTG CTCGAAGTGATCGACGAGCATCAAGCCGACCTCGTGGTGCTCGCGCGCTACATGCAGATTCTGTCGCCGAAGCTGTGCGA AGCGCTGGCCGGCCGCGCGATCAACATTCATCACTCGTTCCTGCCGAGCTTCAAGGGCGCGAAGCCGTATTACCAGGCAT TCGACCGCGGTGTGAAGCTGATCGGCGCGACGGCTCATTACGTGACGACGGATCTCGACGAAGGTCCGATCATCGAGCAG GAAGTGGAGCGCGTCGACCACAGCATGACGCCGGAGCAATTGACGGCGATCGGCCGCGACGTCGAATGCGTGACGCTCGC CCGTGCGGTCAAGTGGCACGTTGAGCATCGCGTCGTGTTGAACGGCAGCAAGACGGTGGTGTTTCGCTAA
Upstream 100 bases:
>100_bases CGCCGCAAATGGTGCGTGCGCAACGAACTTGCCGAAACACGTTGCATCGAACCATGCACACCGAACAAACCACGCATTGA AGAAGGGAGTCACCCAGGTC
Downstream 100 bases:
>100_bases AGCGGCTGATCGCTTTGCAGTAGTGGGTTGATGACAGATGGCGGCGGCCGGATCATTCCGGCGCCGCCATTTTGCCAACT AGGGCCGCGCCGCGGACCGG
Product: formyltetrahydrofolate deformylase
Products: NA
Alternate protein names: Formyl-FH(4) hydrolase [H]
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MSTDHSFILKLSCADRPGIVHAVSGFLFERGSNILDSAQFGDSRTGEFFMRVHFQQVGGDPGLEALRASFATLAEQFGMR WELHDASVKPRVVIMVSKIGHCLNDLLFRYRTGQLGIEIAAIISNHKEFYQLAASYDIPFHHFPLMGATPEAKAAQEARV LEVIDEHQADLVVLARYMQILSPKLCEALAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQ EVERVDHSMTPEQLTAIGRDVECVTLARAVKWHVEHRVVLNGSKTVVFR
Sequences:
>Translated_289_residues MSTDHSFILKLSCADRPGIVHAVSGFLFERGSNILDSAQFGDSRTGEFFMRVHFQQVGGDPGLEALRASFATLAEQFGMR WELHDASVKPRVVIMVSKIGHCLNDLLFRYRTGQLGIEIAAIISNHKEFYQLAASYDIPFHHFPLMGATPEAKAAQEARV LEVIDEHQADLVVLARYMQILSPKLCEALAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQ EVERVDHSMTPEQLTAIGRDVECVTLARAVKWHVEHRVVLNGSKTVVFR >Mature_288_residues STDHSFILKLSCADRPGIVHAVSGFLFERGSNILDSAQFGDSRTGEFFMRVHFQQVGGDPGLEALRASFATLAEQFGMRW ELHDASVKPRVVIMVSKIGHCLNDLLFRYRTGQLGIEIAAIISNHKEFYQLAASYDIPFHHFPLMGATPEAKAAQEARVL EVIDEHQADLVVLARYMQILSPKLCEALAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQE VERVDHSMTPEQLTAIGRDVECVTLARAVKWHVEHRVVLNGSKTVVFR
Specific function: Produces Formate From Formyl-Tetrahydrofolate. Provides The Major Source Of Formate For The Purt-Dependent Synthesis Of 5'-Phosphoribosyl-N-Formylglycinamide (Fgar) During Aerobic Growth. Has A Role In Regulating The One-Carbon Pool. [C]
COG id: COG0788
COG function: function code F; Formyltetrahydrofolate hydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Homo sapiens, GI4503915, Length=167, Percent_Identity=31.1377245508982, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI209869995, Length=167, Percent_Identity=31.1377245508982, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI209869993, Length=167, Percent_Identity=31.1377245508982, Blast_Score=81, Evalue=1e-15, Organism=Escherichia coli, GI1787483, Length=281, Percent_Identity=41.9928825622776, Blast_Score=221, Evalue=4e-59, Organism=Escherichia coli, GI1788846, Length=190, Percent_Identity=27.3684210526316, Blast_Score=87, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17567511, Length=166, Percent_Identity=33.1325301204819, Blast_Score=91, Evalue=9e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR002376 - InterPro: IPR004810 [H]
Pfam domain/function: PF01842 ACT; PF00551 Formyl_trans_N [H]
EC number: =3.5.1.10 [H]
Molecular weight: Translated: 32254; Mature: 32123
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTDHSFILKLSCADRPGIVHAVSGFLFERGSNILDSAQFGDSRTGEFFMRVHFQQVGGD CCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHEEEHHHHCCC PGLEALRASFATLAEQFGMRWELHDASVKPRVVIMVSKIGHCLNDLLFRYRTGQLGIEIA CCHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCHHHH AIISNHKEFYQLAASYDIPFHHFPLMGATPEAKAAQEARVLEVIDEHQADLVVLARYMQI HHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LSPKLCEALAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQ HCHHHHHHHCCCEEEEEHHHCCCCCCCCHHHHHHHCCCEEEECCHHEEEECCCCCCCCHH EVERVDHSMTPEQLTAIGRDVECVTLARAVKWHVEHRVVLNGSKTVVFR HHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEECCEEEEEC >Mature Secondary Structure STDHSFILKLSCADRPGIVHAVSGFLFERGSNILDSAQFGDSRTGEFFMRVHFQQVGGD CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHEEEHHHHCCC PGLEALRASFATLAEQFGMRWELHDASVKPRVVIMVSKIGHCLNDLLFRYRTGQLGIEIA CCHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCHHHH AIISNHKEFYQLAASYDIPFHHFPLMGATPEAKAAQEARVLEVIDEHQADLVVLARYMQI HHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LSPKLCEALAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQ HCHHHHHHHCCCEEEEEHHHCCCCCCCCHHHHHHHCCCEEEECCHHEEEECCCCCCCCHH EVERVDHSMTPEQLTAIGRDVECVTLARAVKWHVEHRVVLNGSKTVVFR HHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEECCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]