| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is ybfA [H]
Identifier: 91781689
GI number: 91781689
Start: 338359
End: 339285
Strand: Reverse
Name: ybfA [H]
Synonym: Bxe_A4157
Alternate gene names: 91781689
Gene position: 339285-338359 (Counterclockwise)
Preceding gene: 91781696
Following gene: 91781686
Centisome position: 6.93
GC content: 66.34
Gene sequence:
>927_bases TTGACCGATTCCGAGGCGCGGCGGCGTGCTCAGGCCGTCCGCCATTTCAACCGCTTCTACGCCCAGCACATTGGCGCACT CCACGAGCATCTGGCAAAGAGCGCCTTCTCACTCACAGAGGTGCGCGTGCTGCACGAACTCCACCGGGGGCGCGCGCAAA CCGCCTCGGTGCTCGGGCGCGCCCTCGGTCTCGACAGCGGTTATCTCAGCCGCCTGTTGACCAGTTTCGAACGACGCAAT CTGATCACGCGCCGCCCGTCCGACACCGACGCGCGCCAATCGCTGATCGCGCTCACGGACAACGGCTACGCCGCCTACGC GCCGCTCGATACCGCGGCGATCGAAGAAGTGTCGACGCTGCTCGCCGGACTCTCGCCGCTCTCGCAGGATCAGTTGATCG CTGCGATGAAAGTGATCGAACGGCTACTCGGGACCGAGCCCAGGCACGAACTCGTGACGCTCCGCCAGCCGCGCGCGGGC GAATGCGGCTGGCTCGTGTATCGGCAGGCGCAGTGGTTCGCCGCGCAATACGGCTGGGATCAGTCGTTTGAAGGATTGCT CGCGCGAATCGTCGCCGATTACACGCAACGCAACGATCCGCTGCGGGAGATGTGCTGGGTGGCCGAGCAGGAAGGCGTGG TGGTCGGCTCGGTCTGCATCGTCGGAGTGTCGACGACGGTGGCGGGCGTGCGGCTCCTGTGGGTGGAGCCGGACGTGCAG CGTTTGGGGATCGGCAGCCAGTTGTTGAGCGAATGCATGCGCTTCGCAAGGCGCGCGGGCTATACCAAGCTCACGCTGAC AACGGCCACCTCGCTGGAACAACCACGGCGCCTGTGCGAGCGCGCCGGCTTCAGGCTTGCCAGCGCAGCGGCTGAGCGCC GCTTCGGCCGGGACCTGACGATCGAGCGATGGGAGCTGGATCTGTAG
Upstream 100 bases:
>100_bases CCACTTCAATCGGGCCCTTGCTGGAGCGGCTTTTGCAAAGGGGGGCGTTCCAATATAGTGCTGGGTAGCAAGCCACAAAA ATTCCCCCGGGGAGCAGCAT
Downstream 100 bases:
>100_bases AAAAGCGTCGCGGCTTAAAACGACGGCACCACCGAGCCCTTGAACTGCGTCTTGATGAACTGGCGCACGTCTTCCGACTG ATACGCGGCAACCAGCTTCC
Product: MarR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MTDSEARRRAQAVRHFNRFYAQHIGALHEHLAKSAFSLTEVRVLHELHRGRAQTASVLGRALGLDSGYLSRLLTSFERRN LITRRPSDTDARQSLIALTDNGYAAYAPLDTAAIEEVSTLLAGLSPLSQDQLIAAMKVIERLLGTEPRHELVTLRQPRAG ECGWLVYRQAQWFAAQYGWDQSFEGLLARIVADYTQRNDPLREMCWVAEQEGVVVGSVCIVGVSTTVAGVRLLWVEPDVQ RLGIGSQLLSECMRFARRAGYTKLTLTTATSLEQPRRLCERAGFRLASAAAERRFGRDLTIERWELDL
Sequences:
>Translated_308_residues MTDSEARRRAQAVRHFNRFYAQHIGALHEHLAKSAFSLTEVRVLHELHRGRAQTASVLGRALGLDSGYLSRLLTSFERRN LITRRPSDTDARQSLIALTDNGYAAYAPLDTAAIEEVSTLLAGLSPLSQDQLIAAMKVIERLLGTEPRHELVTLRQPRAG ECGWLVYRQAQWFAAQYGWDQSFEGLLARIVADYTQRNDPLREMCWVAEQEGVVVGSVCIVGVSTTVAGVRLLWVEPDVQ RLGIGSQLLSECMRFARRAGYTKLTLTTATSLEQPRRLCERAGFRLASAAAERRFGRDLTIERWELDL >Mature_307_residues TDSEARRRAQAVRHFNRFYAQHIGALHEHLAKSAFSLTEVRVLHELHRGRAQTASVLGRALGLDSGYLSRLLTSFERRNL ITRRPSDTDARQSLIALTDNGYAAYAPLDTAAIEEVSTLLAGLSPLSQDQLIAAMKVIERLLGTEPRHELVTLRQPRAGE CGWLVYRQAQWFAAQYGWDQSFEGLLARIVADYTQRNDPLREMCWVAEQEGVVVGSVCIVGVSTTVAGVRLLWVEPDVQR LGIGSQLLSECMRFARRAGYTKLTLTTATSLEQPRRLCERAGFRLASAAAERRFGRDLTIERWELDL
Specific function: Putative DNA-binding acetyltransferase (Potential) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 N-acetyltransferase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000182 - InterPro: IPR016181 - InterPro: IPR000835 - InterPro: IPR011991 [H]
Pfam domain/function: PF00583 Acetyltransf_1; PF01047 MarR [H]
EC number: NA
Molecular weight: Translated: 34581; Mature: 34450
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: PS50995 HTH_MARR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDSEARRRAQAVRHFNRFYAQHIGALHEHLAKSAFSLTEVRVLHELHRGRAQTASVLGR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH ALGLDSGYLSRLLTSFERRNLITRRPSDTDARQSLIALTDNGYAAYAPLDTAAIEEVSTL HHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEEEECCCEEEECCCCHHHHHHHHHH LAGLSPLSQDQLIAAMKVIERLLGTEPRHELVTLRQPRAGECGWLVYRQAQWFAAQYGWD HHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHCCCC QSFEGLLARIVADYTQRNDPLREMCWVAEQEGVVVGSVCIVGVSTTVAGVRLLWVEPDVQ HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCEEEEEECCCHH RLGIGSQLLSECMRFARRAGYTKLTLTTATSLEQPRRLCERAGFRLASAAAERRFGRDLT HHCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC IERWELDL EEECCCCC >Mature Secondary Structure TDSEARRRAQAVRHFNRFYAQHIGALHEHLAKSAFSLTEVRVLHELHRGRAQTASVLGR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH ALGLDSGYLSRLLTSFERRNLITRRPSDTDARQSLIALTDNGYAAYAPLDTAAIEEVSTL HHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEEEECCCEEEECCCCHHHHHHHHHH LAGLSPLSQDQLIAAMKVIERLLGTEPRHELVTLRQPRAGECGWLVYRQAQWFAAQYGWD HHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHCCCC QSFEGLLARIVADYTQRNDPLREMCWVAEQEGVVVGSVCIVGVSTTVAGVRLLWVEPDVQ HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCEEEEEECCCHH RLGIGSQLLSECMRFARRAGYTKLTLTTATSLEQPRRLCERAGFRLASAAAERRFGRDLT HHCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC IERWELDL EEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]