| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is ucpA [C]
Identifier: 91781598
GI number: 91781598
Start: 248577
End: 249356
Strand: Reverse
Name: ucpA [C]
Synonym: Bxe_A4248
Alternate gene names: 91781598
Gene position: 249356-248577 (Counterclockwise)
Preceding gene: 91781599
Following gene: 91781597
Centisome position: 5.09
GC content: 68.33
Gene sequence:
>780_bases ATGAGTTCACCGTTGAAGGTTTTCATTACCGGCGCCTCGAGCGGCATCGGCCTCGCGCTCGCGGCCGAATATGCGCGGCG CGGCGCGGTTCTCGGCCTCGTGGCCCGCCGCGGCGACGCCCTCGCCGCCTTCCAGCAGTCCCATCCGCAGAGCACCGTCT CCACCTATTCCGTCGACGTTCGCGACGCCGAAGCGCTCGCCGACGCGGCCGCGCAATTCATCGCGCAGCACGGCTTGCCG GACGTCGTGATCGCCAACGCCGGCGTCAGCCGCGGTGCGGTCACCGGCCACGGCGACCTGCGCACCTTCCGCGAAGTGAT GGATATCAACTACTTCGGCATGGTCGCCACGTTCGAGCCATTCGCCGCCGCGATGAGCGCCGCGAGACACGGCACGCTGG TGGGAATCGCCAGCGTCGCCGGTGTGCGCGGCTTGCCGGGCTCCGGCGCGTACAGCGCGTCGAAATCGGCGGCGCTCAAG TATCTGGAAGCGTTGCGCGTCGAAATGCGGCCGCACGGCGTCGGCGTGGTCACCATTGCGCCCGGCTATATCCGCACGCC CATGACCGAGCACAACCCATACACCATGCCGTTCCTGATGGATGCCGACCGTTTCGCCGTGAAGGTGGCGCAGGCAATCG AGCGTCAAACGGCCTTCGCGGTGTTCCCCTGGCAGATGCGCATCGTGGCCATGCTGCTGCATGTGCTGCCGCGCTGGCTC TACGACCGTGCGTTCGAGCGCGCGCCGCGCAAGCCGCGCACCGCCGCCGAGGTCGAGTAA
Upstream 100 bases:
>100_bases CGGCCCCGCCGCCACCAACAGCCTGCCGGGCACGATCCAGGTGCTGGATTACCTGGTCGCGCAAGTCCGCGCCAAGAAGA TGTAAAGCCAGGGCGCCGGA
Downstream 100 bases:
>100_bases GCCATGCAACCGGGTGCGGTCGATGCAGCCGGCGTCGCGCACGAACCCGCAGGACCCGCGGCACGTATCGTCTCGCTGGT GCCGAGCATCACCGAACTGC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MSSPLKVFITGASSGIGLALAAEYARRGAVLGLVARRGDALAAFQQSHPQSTVSTYSVDVRDAEALADAAAQFIAQHGLP DVVIANAGVSRGAVTGHGDLRTFREVMDINYFGMVATFEPFAAAMSAARHGTLVGIASVAGVRGLPGSGAYSASKSAALK YLEALRVEMRPHGVGVVTIAPGYIRTPMTEHNPYTMPFLMDADRFAVKVAQAIERQTAFAVFPWQMRIVAMLLHVLPRWL YDRAFERAPRKPRTAAEVE
Sequences:
>Translated_259_residues MSSPLKVFITGASSGIGLALAAEYARRGAVLGLVARRGDALAAFQQSHPQSTVSTYSVDVRDAEALADAAAQFIAQHGLP DVVIANAGVSRGAVTGHGDLRTFREVMDINYFGMVATFEPFAAAMSAARHGTLVGIASVAGVRGLPGSGAYSASKSAALK YLEALRVEMRPHGVGVVTIAPGYIRTPMTEHNPYTMPFLMDADRFAVKVAQAIERQTAFAVFPWQMRIVAMLLHVLPRWL YDRAFERAPRKPRTAAEVE >Mature_258_residues SSPLKVFITGASSGIGLALAAEYARRGAVLGLVARRGDALAAFQQSHPQSTVSTYSVDVRDAEALADAAAQFIAQHGLPD VVIANAGVSRGAVTGHGDLRTFREVMDINYFGMVATFEPFAAAMSAARHGTLVGIASVAGVRGLPGSGAYSASKSAALKY LEALRVEMRPHGVGVVTIAPGYIRTPMTEHNPYTMPFLMDADRFAVKVAQAIERQTAFAVFPWQMRIVAMLLHVLPRWLY DRAFERAPRKPRTAAEVE
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=34.375, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI40807363, Length=246, Percent_Identity=32.1138211382114, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI7706318, Length=192, Percent_Identity=27.6041666666667, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI4503817, Length=199, Percent_Identity=32.6633165829146, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI157739938, Length=187, Percent_Identity=29.9465240641711, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI310128830, Length=255, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI310115468, Length=255, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI150247226, Length=213, Percent_Identity=32.3943661971831, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI210032110, Length=238, Percent_Identity=25.6302521008403, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI223718074, Length=193, Percent_Identity=33.160621761658, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI7657478, Length=192, Percent_Identity=29.6875, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI142976729, Length=237, Percent_Identity=24.0506329113924, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI31543615, Length=226, Percent_Identity=24.7787610619469, Blast_Score=68, Evalue=8e-12, Organism=Escherichia coli, GI87082100, Length=192, Percent_Identity=33.8541666666667, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787335, Length=183, Percent_Identity=28.4153005464481, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=32.9842931937173, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787820, Length=179, Percent_Identity=24.5810055865922, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790717, Length=190, Percent_Identity=26.8421052631579, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17508895, Length=243, Percent_Identity=28.8065843621399, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI71997402, Length=258, Percent_Identity=28.2945736434109, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17567345, Length=191, Percent_Identity=26.7015706806283, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17507613, Length=191, Percent_Identity=29.8429319371728, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI32563809, Length=193, Percent_Identity=29.5336787564767, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17570069, Length=186, Percent_Identity=32.7956989247312, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17564282, Length=241, Percent_Identity=28.2157676348548, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17555706, Length=204, Percent_Identity=29.4117647058824, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI115534660, Length=192, Percent_Identity=27.0833333333333, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193203117, Length=244, Percent_Identity=27.4590163934426, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193203115, Length=244, Percent_Identity=27.4590163934426, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI25147288, Length=191, Percent_Identity=25.130890052356, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71994600, Length=189, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17560150, Length=188, Percent_Identity=25.531914893617, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17562908, Length=193, Percent_Identity=26.4248704663212, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17563726, Length=189, Percent_Identity=29.1005291005291, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17562990, Length=188, Percent_Identity=25.531914893617, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6322067, Length=205, Percent_Identity=28.780487804878, Blast_Score=76, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6323882, Length=191, Percent_Identity=29.8429319371728, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6320089, Length=188, Percent_Identity=27.1276595744681, Blast_Score=68, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322227, Length=193, Percent_Identity=27.4611398963731, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI21358495, Length=269, Percent_Identity=28.6245353159851, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI23397609, Length=184, Percent_Identity=33.1521739130435, Blast_Score=87, Evalue=8e-18, Organism=Drosophila melanogaster, GI24581726, Length=212, Percent_Identity=26.4150943396226, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24644339, Length=190, Percent_Identity=30.5263157894737, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI21357041, Length=188, Percent_Identity=27.6595744680851, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI21356301, Length=198, Percent_Identity=29.7979797979798, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI28571526, Length=190, Percent_Identity=28.9473684210526, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI24641388, Length=195, Percent_Identity=32.8205128205128, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21355631, Length=204, Percent_Identity=27.4509803921569, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24649181, Length=185, Percent_Identity=27.027027027027, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24639444, Length=184, Percent_Identity=28.804347826087, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24580925, Length=243, Percent_Identity=29.2181069958848, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007236, Length=208, Percent_Identity=29.3269230769231, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI281364892, Length=216, Percent_Identity=25.9259259259259, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24640442, Length=191, Percent_Identity=26.7015706806283, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27730; Mature: 27599
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPLKVFITGASSGIGLALAAEYARRGAVLGLVARRGDALAAFQQSHPQSTVSTYSVDV CCCCEEEEEEECCCCCHHHHHHHHHHCCHHEEHHHHCCCHHHHHHHCCCCCHHHEEEECC RDAEALADAAAQFIAQHGLPDVVIANAGVSRGAVTGHGDLRTFREVMDINYFGMVATFEP HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH FAAAMSAARHGTLVGIASVAGVRGLPGSGAYSASKSAALKYLEALRVEMRPHGVGVVTIA HHHHHHHHHCCCEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC PGYIRTPMTEHNPYTMPFLMDADRFAVKVAQAIERQTAFAVFPWQMRIVAMLLHVLPRWL CCHHCCCCCCCCCEECCEEECCHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHH YDRAFERAPRKPRTAAEVE HHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SSPLKVFITGASSGIGLALAAEYARRGAVLGLVARRGDALAAFQQSHPQSTVSTYSVDV CCCEEEEEEECCCCCHHHHHHHHHHCCHHEEHHHHCCCHHHHHHHCCCCCHHHEEEECC RDAEALADAAAQFIAQHGLPDVVIANAGVSRGAVTGHGDLRTFREVMDINYFGMVATFEP HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH FAAAMSAARHGTLVGIASVAGVRGLPGSGAYSASKSAALKYLEALRVEMRPHGVGVVTIA HHHHHHHHHCCCEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC PGYIRTPMTEHNPYTMPFLMDADRFAVKVAQAIERQTAFAVFPWQMRIVAMLLHVLPRWL CCHHCCCCCCCCCEECCEEECCHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHH YDRAFERAPRKPRTAAEVE HHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1730672 [H]