| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91781570
Identifier: 91781570
GI number: 91781570
Start: 221170
End: 222141
Strand: Direct
Name: 91781570
Synonym: Bxe_A4275
Alternate gene names: NA
Gene position: 221170-222141 (Clockwise)
Preceding gene: 91781568
Following gene: 91781578
Centisome position: 4.52
GC content: 64.09
Gene sequence:
>972_bases ATGCTTGCGTGGGCTGTCCCACCTCGCGCGGACACATTGGCCTCCTACAATGCAGTGACTCCAGATCACAAGAGAGACGT CATGGCCTTCGAGAATTTCACGCCCTTTCGCGTCGCCGTGGGCGATGTCGATATTTTTGGAGTGAAGGGCGGAGCGGGCC CGCCTCTTCTTTTGTTGCACGGTCATCCGCAGTCGCATCTGATCTGGCGGAAGTGCGCTGCGCGACTGGCCAAACATTTC ACCGTCATCGCCACCGATCTGCGCGGCTACGGCGCATCGGGCAAGCCGCCGAGCGACGCCGAACATACGCCGTATTCCAA GCGCGTGATGGCGGCCGATCAGGTCGCCGTGATGCGTCATTTCGGCTTCGAACGTTTTCTCGTGTGCGCACACGACCGCG GCGCACGCGTCGCGCATCGAATGGCGCTCGATCATCCCGACGCCGTCGAGCGTCTGATGCTGCTCGATATCGCGCCGACG CTCGCAATGTACGAGGCCACCGACCGCACCTTCGCGACGCACTACTTCCACTGGTTCTTCCTCATCCAGCCGGAGCCGCT GCCCGAGACGCTGATCGGCGCGAACCCGGCGGCTTATGTCGATGCGGTGATGGGCGGCCGTCATGCGGGTCTGGCGCCGT TCGATCCCGCCGCGCTCGACGCCTATCGCTCGGCGCTCGCCCAACCAGGCGCCGTGCACGCGATGTGCGAGGACTACCGC GCGTCGGCGAGCATCGACCTGGAGCACGATCGGGCCGATATCGAGCGCGGTCACAAGATCGGCTGCCCGCTGCGCGTGTT GTGGGGCGACAAGGGCGTGATCGAGAAGTGCTTCGACGCGCTGGCCGAATGGCGTCATGTGGCGCGCGACGTGAGTGGCC GCGCGCTGCCTTGCGGACACTACATACCCGAAGAAGCATCGGACGAACTGGTCGCCGAAATGCTGTCTTTTTTCGAAGCG GTCGAGCAGTAG
Upstream 100 bases:
>100_bases CCATCCGATAATTTAAGAACGATCGTTCGATTATAGGCGATGCGCGGCGCTCGCGTCCGGCCGCTGCGTTTGGAACAGTT GGAAGGAGTGTTCAGGTTCT
Downstream 100 bases:
>100_bases GTCCCGTTCGTCCGCTGCGGTCGTGCGTGAAGCCGCGCTCGCCGTCGTTCCGCCGTAGCGGCGTGCCACAATGCTACGGA TTCCCGAGTAACTGGAATCC
Product: putative hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 323; Mature: 323
Protein sequence:
>323_residues MLAWAVPPRADTLASYNAVTPDHKRDVMAFENFTPFRVAVGDVDIFGVKGGAGPPLLLLHGHPQSHLIWRKCAARLAKHF TVIATDLRGYGASGKPPSDAEHTPYSKRVMAADQVAVMRHFGFERFLVCAHDRGARVAHRMALDHPDAVERLMLLDIAPT LAMYEATDRTFATHYFHWFFLIQPEPLPETLIGANPAAYVDAVMGGRHAGLAPFDPAALDAYRSALAQPGAVHAMCEDYR ASASIDLEHDRADIERGHKIGCPLRVLWGDKGVIEKCFDALAEWRHVARDVSGRALPCGHYIPEEASDELVAEMLSFFEA VEQ
Sequences:
>Translated_323_residues MLAWAVPPRADTLASYNAVTPDHKRDVMAFENFTPFRVAVGDVDIFGVKGGAGPPLLLLHGHPQSHLIWRKCAARLAKHF TVIATDLRGYGASGKPPSDAEHTPYSKRVMAADQVAVMRHFGFERFLVCAHDRGARVAHRMALDHPDAVERLMLLDIAPT LAMYEATDRTFATHYFHWFFLIQPEPLPETLIGANPAAYVDAVMGGRHAGLAPFDPAALDAYRSALAQPGAVHAMCEDYR ASASIDLEHDRADIERGHKIGCPLRVLWGDKGVIEKCFDALAEWRHVARDVSGRALPCGHYIPEEASDELVAEMLSFFEA VEQ >Mature_323_residues MLAWAVPPRADTLASYNAVTPDHKRDVMAFENFTPFRVAVGDVDIFGVKGGAGPPLLLLHGHPQSHLIWRKCAARLAKHF TVIATDLRGYGASGKPPSDAEHTPYSKRVMAADQVAVMRHFGFERFLVCAHDRGARVAHRMALDHPDAVERLMLLDIAPT LAMYEATDRTFATHYFHWFFLIQPEPLPETLIGANPAAYVDAVMGGRHAGLAPFDPAALDAYRSALAQPGAVHAMCEDYR ASASIDLEHDRADIERGHKIGCPLRVLWGDKGVIEKCFDALAEWRHVARDVSGRALPCGHYIPEEASDELVAEMLSFFEA VEQ
Specific function: Catalyzes the hydrolytic defluorination of fluoroacetate to produce glycolate. Has low activity towards chloroacetate [H]
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. Epoxide hydrolase family [H]
Homologues:
Organism=Homo sapiens, GI218777840, Length=278, Percent_Identity=27.6978417266187, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI13376164, Length=278, Percent_Identity=27.6978417266187, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI218777837, Length=232, Percent_Identity=25, Blast_Score=75, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17562298, Length=250, Percent_Identity=25.2, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17554012, Length=239, Percent_Identity=23.8493723849372, Blast_Score=77, Evalue=8e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =3.8.1.3 [H]
Molecular weight: Translated: 35625; Mature: 35625
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAWAVPPRADTLASYNAVTPDHKRDVMAFENFTPFRVAVGDVDIFGVKGGAGPPLLLLH CCCCCCCCCCHHHHCCCCCCCCCCCCHHHHCCCCCEEEEECCEEEEEECCCCCCCEEEEE GHPQSHLIWRKCAARLAKHFTVIATDLRGYGASGKPPSDAEHTPYSKRVMAADQVAVMRH CCCCHHHHHHHHHHHHHHHHEEEEEHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH FGFERFLVCAHDRGARVAHRMALDHPDAVERLMLLDIAPTLAMYEATDRTFATHYFHWFF CCCCEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEE LIQPEPLPETLIGANPAAYVDAVMGGRHAGLAPFDPAALDAYRSALAQPGAVHAMCEDYR EECCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHC ASASIDLEHDRADIERGHKIGCPLRVLWGDKGVIEKCFDALAEWRHVARDVSGRALPCGH CCCEEEECCCHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC YIPEEASDELVAEMLSFFEAVEQ CCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLAWAVPPRADTLASYNAVTPDHKRDVMAFENFTPFRVAVGDVDIFGVKGGAGPPLLLLH CCCCCCCCCCHHHHCCCCCCCCCCCCHHHHCCCCCEEEEECCEEEEEECCCCCCCEEEEE GHPQSHLIWRKCAARLAKHFTVIATDLRGYGASGKPPSDAEHTPYSKRVMAADQVAVMRH CCCCHHHHHHHHHHHHHHHHEEEEEHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH FGFERFLVCAHDRGARVAHRMALDHPDAVERLMLLDIAPTLAMYEATDRTFATHYFHWFF CCCCEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEE LIQPEPLPETLIGANPAAYVDAVMGGRHAGLAPFDPAALDAYRSALAQPGAVHAMCEDYR EECCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHC ASASIDLEHDRADIERGHKIGCPLRVLWGDKGVIEKCFDALAEWRHVARDVSGRALPCGH CCCEEEECCCHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC YIPEEASDELVAEMLSFFEAVEQ CCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA