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The map label for this gene is yafC [H]

Identifier: 91781567

GI number: 91781567

Start: 215009

End: 215947

Strand: Direct

Name: yafC [H]

Synonym: Bxe_A4278

Alternate gene names: 91781567

Gene position: 215009-215947 (Clockwise)

Preceding gene: 91781566

Following gene: 91781568

Centisome position: 4.39

GC content: 66.03

Gene sequence:

>939_bases
ATGGATACCCTCGTCAGCATGAAAGTGTTCCGGCATGTGGTCGAAGTCGGCAGCTTTGTCGGCGCGGCCGAACGGATGGA
GATGTCGGCGGCGATGGCGAGCAAACACGTGATGCATCTCGAACAGCAACTCGGCGCGCGGCTCCTGAACCGCACCACGC
GGCGGGTCGCGCCCACCGAGGCGGGCCGCGAATATTACGAGCGTCTGAGCCAGGTGCTCGCCGAGCTCGAAGAGGCCGAA
CAGGCGGTCGGCGCCGCGAGCGTCGTGCCGCAGGGGCGCTTGCGGGTGTCGTCGCTGTCGGCGTTCGGTTTGAGCCATGT
GATGGCCGCGGTGGCGGACTACGCCGCGCAGTATCCGCAGGTCACCGTCGATATGACACTCTCCGACCGGGTGGTCGAAC
TGATCGACGAAGGTTTCGATGTCGCCATCCGGGCTTCGCCGGGCGGGCTCAAGTCTTCTTCATTGATCGCGCGGCAGATC
GCGACCGCGCATCTCGTGCTGTGCGCGTCGCCTGCCTATCTGAAACGGCACGGCACGCCGAAAACCGTGGCCGACCTCGC
GCGTCACAACTATCTCCAGTACGCGGGCGTGTCGGCGCTCGAAATCGCGCCGGCAACCGGCGAAGCTTCTTCGCGCGTAC
GCCTGACGGGCAACCTGATCGTCAACCATCTCGAAGCGCAGCGTGTGATCGTGCTGCAGGGCGCGGGCATCGCGATGCTC
GGCACCGAAGTGATCGGCGACGATCTGGCCGCGGGGCGCCTCGTGCCGCTGCTGGTTGACGACGTGCCGCCGCGCGAGCT
GCCGATTTATGTGGTCTACGCGAGCCGCCGGCATCTGTCGGCCAAGGTGCGCTCGTTTGTCGACTTCCTCGCTGAGCGGT
TCGCCAACGAGTCGCTGTGGCCGTCGCTCGAACAGATCAAGGCGTTGGCGGTGCGGTAG

Upstream 100 bases:

>100_bases
TCTGACGCCGGGATTCCTTTCATGGACGCGTGCTTTGCCGACCAGCTTTTGATAAACCCGGCAAAATGCCGTCGATTGAT
TCCTGAAGCGAGCGATTGAG

Downstream 100 bases:

>100_bases
GCGCCGAGGACGGTCAAGCGCCGCGAACCGTTTCGCTATACTGGTTGCCAGCACCCATACGCGTAACGATCTGGGGGAGA
CATGACCGATCTGTCCACGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MDTLVSMKVFRHVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYYERLSQVLAELEEAE
QAVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDMTLSDRVVELIDEGFDVAIRASPGGLKSSSLIARQI
ATAHLVLCASPAYLKRHGTPKTVADLARHNYLQYAGVSALEIAPATGEASSRVRLTGNLIVNHLEAQRVIVLQGAGIAML
GTEVIGDDLAAGRLVPLLVDDVPPRELPIYVVYASRRHLSAKVRSFVDFLAERFANESLWPSLEQIKALAVR

Sequences:

>Translated_312_residues
MDTLVSMKVFRHVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYYERLSQVLAELEEAE
QAVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDMTLSDRVVELIDEGFDVAIRASPGGLKSSSLIARQI
ATAHLVLCASPAYLKRHGTPKTVADLARHNYLQYAGVSALEIAPATGEASSRVRLTGNLIVNHLEAQRVIVLQGAGIAML
GTEVIGDDLAAGRLVPLLVDDVPPRELPIYVVYASRRHLSAKVRSFVDFLAERFANESLWPSLEQIKALAVR
>Mature_312_residues
MDTLVSMKVFRHVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYYERLSQVLAELEEAE
QAVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDMTLSDRVVELIDEGFDVAIRASPGGLKSSSLIARQI
ATAHLVLCASPAYLKRHGTPKTVADLARHNYLQYAGVSALEIAPATGEASSRVRLTGNLIVNHLEAQRVIVLQGAGIAML
GTEVIGDDLAAGRLVPLLVDDVPPRELPIYVVYASRRHLSAKVRSFVDFLAERFANESLWPSLEQIKALAVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=36.013986013986, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=35.9060402684564, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1789639, Length=300, Percent_Identity=32.6666666666667, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=32.312925170068, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=28.5223367697594, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=28.7671232876712, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1787589, Length=298, Percent_Identity=27.8523489932886, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1789173, Length=308, Percent_Identity=26.6233766233766, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788481, Length=296, Percent_Identity=28.3783783783784, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788706, Length=311, Percent_Identity=22.8295819935691, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI157672245, Length=144, Percent_Identity=29.1666666666667, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33791; Mature: 33791

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLVSMKVFRHVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
AGREYYERLSQVLAELEEAEQAVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQ
HHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC
VTVDMTLSDRVVELIDEGFDVAIRASPGGLKSSSLIARQIATAHLVLCASPAYLKRHGTP
EEEEECHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHEECCCHHHHHCCCC
KTVADLARHNYLQYAGVSALEIAPATGEASSRVRLTGNLIVNHLEAQRVIVLQGAGIAML
HHHHHHHHHCHHHHCCCCCEEECCCCCCCCCEEEEEHHHHHHHHCCCEEEEEECCCEEEH
GTEVIGDDLAAGRLVPLLVDDVPPRELPIYVVYASRRHLSAKVRSFVDFLAERFANESLW
HHHHHCCCHHCCCEEHEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCC
PSLEQIKALAVR
CCHHHHHHHHCC
>Mature Secondary Structure
MDTLVSMKVFRHVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
AGREYYERLSQVLAELEEAEQAVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQ
HHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC
VTVDMTLSDRVVELIDEGFDVAIRASPGGLKSSSLIARQIATAHLVLCASPAYLKRHGTP
EEEEECHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHEECCCHHHHHCCCC
KTVADLARHNYLQYAGVSALEIAPATGEASSRVRLTGNLIVNHLEAQRVIVLQGAGIAML
HHHHHHHHHCHHHHCCCCCEEECCCCCCCCCEEEEEHHHHHHHHCCCEEEEEECCCEEEH
GTEVIGDDLAAGRLVPLLVDDVPPRELPIYVVYASRRHLSAKVRSFVDFLAERFANESLW
HHHHHCCCHHCCCEEHEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCC
PSLEQIKALAVR
CCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]