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The map label for this gene is ydfH [H]

Identifier: 91781398

GI number: 91781398

Start: 18386

End: 19111

Strand: Reverse

Name: ydfH [H]

Synonym: Bxe_A4449

Alternate gene names: 91781398

Gene position: 19111-18386 (Counterclockwise)

Preceding gene: 91781399

Following gene: 91781397

Centisome position: 0.39

GC content: 63.22

Gene sequence:

>726_bases
ATGCGAAATACTGCGGTGGCCGAACAGCCGGCGTCCGTACCCGCGATGTCCAGACTGACGCGTCAGCGCCTGCATGACAC
GGTGGTGGAGTATTTGCGCGATTACATCGTGAAAGGCGTGCTCGCGCCCGGCGTCAAGCTGAACGAGCGGGAGTTGTGCG
AAACGCTGGGCATTTCGCGCACGCCGCTGCGGGAAGCGATCAAGGTGCTGGCGGCCGAGGGGCTGATCGAGATCTCGGCC
AATCGCGGAGCGGCCGTCACGAAGCTGGCGGAGTCGGAAATCGACGAGATGTTCGAGTTGATGAGCGGCCTCGAAGCGTT
TGCGGGCGAGCTTGCCTGCGAACGCATCACGCCCCACGAAATCGCGGAAATCAAGGCGCTGCACTACGCGATGGTGGCGT
GCCGCGAGCGCGAGGATCTGTCGGGCTACTACGGCTACAACCAGCAGATCCACGACAGGATCAACGGAGCGGCGCGCAAT
TGCGCGCTGCGGCAAACTTATCTGTCGATCAACCGGCGGCTTCAGGCCATGCGGTTCAAGTCGAATTTCCACAAGTCGAA
GCGGGACCACGCCGTGCACGATCATGAGGAAATGATCAAGGCGCTCGAATCGCGCGACGGCAAACGCCTTTCTGCGATCT
TGCGCCAGCATCTGCTGGACAAGCGCGACGTCGTGCTCGTGACGCTCGCTACCGCGCGCGAGACGCCGGCGACGGGCGGC
CGGTAG

Upstream 100 bases:

>100_bases
ACCGGCTGGATAAATCCCAAACTCCGCTCGCCGCCAGTCACATTGGAACTGGATGAACAGTTGCGATAGACTGGCGAAAA
AGTGCGAAAAGGGATTTTGA

Downstream 100 bases:

>100_bases
TCGCATCATCGGTTTCATACCGCGCCGGCCATTGGCCTTTGCGGTCTTTGTGGCCTTTGCGGCCTTTGTGGCCTTCCGCC
GGCGCTGCCGCAGCTTTCCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MRNTAVAEQPASVPAMSRLTRQRLHDTVVEYLRDYIVKGVLAPGVKLNERELCETLGISRTPLREAIKVLAAEGLIEISA
NRGAAVTKLAESEIDEMFELMSGLEAFAGELACERITPHEIAEIKALHYAMVACREREDLSGYYGYNQQIHDRINGAARN
CALRQTYLSINRRLQAMRFKSNFHKSKRDHAVHDHEEMIKALESRDGKRLSAILRQHLLDKRDVVLVTLATARETPATGG
R

Sequences:

>Translated_241_residues
MRNTAVAEQPASVPAMSRLTRQRLHDTVVEYLRDYIVKGVLAPGVKLNERELCETLGISRTPLREAIKVLAAEGLIEISA
NRGAAVTKLAESEIDEMFELMSGLEAFAGELACERITPHEIAEIKALHYAMVACREREDLSGYYGYNQQIHDRINGAARN
CALRQTYLSINRRLQAMRFKSNFHKSKRDHAVHDHEEMIKALESRDGKRLSAILRQHLLDKRDVVLVTLATARETPATGG
R
>Mature_241_residues
MRNTAVAEQPASVPAMSRLTRQRLHDTVVEYLRDYIVKGVLAPGVKLNERELCETLGISRTPLREAIKVLAAEGLIEISA
NRGAAVTKLAESEIDEMFELMSGLEAFAGELACERITPHEIAEIKALHYAMVACREREDLSGYYGYNQQIHDRINGAARN
CALRQTYLSINRRLQAMRFKSNFHKSKRDHAVHDHEEMIKALESRDGKRLSAILRQHLLDKRDVVLVTLATARETPATGG
R

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=199, Percent_Identity=27.6381909547739, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI87081914, Length=214, Percent_Identity=24.2990654205607, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27118; Mature: 27118

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNTAVAEQPASVPAMSRLTRQRLHDTVVEYLRDYIVKGVLAPGVKLNERELCETLGISR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
TPLREAIKVLAAEGLIEISANRGAAVTKLAESEIDEMFELMSGLEAFAGELACERITPHE
CCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IAEIKALHYAMVACREREDLSGYYGYNQQIHDRINGAARNCALRQTYLSINRRLQAMRFK
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNFHKSKRDHAVHDHEEMIKALESRDGKRLSAILRQHLLDKRDVVLVTLATARETPATGG
HHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
R
C
>Mature Secondary Structure
MRNTAVAEQPASVPAMSRLTRQRLHDTVVEYLRDYIVKGVLAPGVKLNERELCETLGISR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
TPLREAIKVLAAEGLIEISANRGAAVTKLAESEIDEMFELMSGLEAFAGELACERITPHE
CCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IAEIKALHYAMVACREREDLSGYYGYNQQIHDRINGAARNCALRQTYLSINRRLQAMRFK
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNFHKSKRDHAVHDHEEMIKALESRDGKRLSAILRQHLLDKRDVVLVTLATARETPATGG
HHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]