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The map label for this gene is sucD [H]

Identifier: 91790510

GI number: 91790510

Start: 4968327

End: 4969220

Strand: Reverse

Name: sucD [H]

Synonym: Bpro_4681

Alternate gene names: 91790510

Gene position: 4969220-4968327 (Counterclockwise)

Preceding gene: 91790511

Following gene: 91790509

Centisome position: 95.56

GC content: 62.42

Gene sequence:

>894_bases
ATGAGCATTTACATCAACCAACACACCAAAGTCATCACGCAAGGCATCACCGGCAAGACCGGGCAGTTCCACACCCGCAT
GTGCCGCGACTACGCCAACGGCAAAGAGTGCTTCGTCGCTGGCGTGAACCCGAAGAAAGCCGGCGAAGACTTCGAAGGCA
TCCCGATTTATGCCAACGTCACCGAAGCCGCCCAGGCCACCGGTGCGACGGTGTCGGTGATTTATGTGCCGCCCGCCGGC
GCGGCAGCCGCCATCTGGGAAGCCGTGGAAGCCAACCTCGATCTGGCGATCTGCATCACCGAAGGCATTCCCGTGCGGGA
CATGCTGGAAGTGCGCAACCGCATGAAGGCCAAGGAAGCCGCTGGCGGCAAGCGGACGCTGCTGCTGGGCCCCAACTGCC
CGGGTCTCATCACACCCGAAGAGATCAAGATCGGCATCATGCCCGGCCACATCCACCGCAAGGGCCGCATTGGCGTGGTC
AGCCGCTCCGGCACGCTGACCTATGAAGCCGTGGCACAGCTGACCGAAATCGGCCTGGGCCAGTCCAGCGCTGTCGGCAT
TGGTGGCGACCCGATCAATGGCCTGAAGCACATCGACGTGATGAAAGCCTTCAACGACGACCCTGACACCGATGCCGTCA
TCATGATTGGCGAGATTGGTGGCCCCGATGAAGCCGAAGCGGCTGTCTGGTGCAAGGCCAACATGAAAAAGCCCATCGTC
GGCTTCATCGCTGGTGTGACGGCACCGGCCGGCAAACGCATGGGCCATGCAGGTGCGCTGATCTCCGGTGGCGCCGACAC
GGCCGACGCCAAGCTGGCCATCATGGAAGAGTGCGGCTTCACGGTGACGCGCAATCCTTCCGAGATGGCCAAGCTGCTCA
AGGCGCTGCTCTAG

Upstream 100 bases:

>100_bases
GCCTTTGGCGCTCCCCCTTCAAGGGGGCGACCACATGCGGCCCGGCAAAGCCGGTTCCGCTGCGGTCACTTGACAATAGC
ATTCACCTTGTGAGGACAGC

Downstream 100 bases:

>100_bases
GGCTGGCAAGCTGTTTACGCCCAACTCGATTCGGGAAACTTGACCACGGTCAAGCGCGTAAGCAGTAATACGCATCGTGG
TAAGCCCCAATGGGGCTTAG

Product: succinyl-CoA synthetase subunit alpha

Products: NA

Alternate protein names: Succinyl-CoA synthetase subunit alpha; SCS-alpha; Vegetative protein 239; VEG239 [H]

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSIYINQHTKVITQGITGKTGQFHTRMCRDYANGKECFVAGVNPKKAGEDFEGIPIYANVTEAAQATGATVSVIYVPPAG
AAAAIWEAVEANLDLAICITEGIPVRDMLEVRNRMKAKEAAGGKRTLLLGPNCPGLITPEEIKIGIMPGHIHRKGRIGVV
SRSGTLTYEAVAQLTEIGLGQSSAVGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEAEAAVWCKANMKKPIV
GFIAGVTAPAGKRMGHAGALISGGADTADAKLAIMEECGFTVTRNPSEMAKLLKALL

Sequences:

>Translated_297_residues
MSIYINQHTKVITQGITGKTGQFHTRMCRDYANGKECFVAGVNPKKAGEDFEGIPIYANVTEAAQATGATVSVIYVPPAG
AAAAIWEAVEANLDLAICITEGIPVRDMLEVRNRMKAKEAAGGKRTLLLGPNCPGLITPEEIKIGIMPGHIHRKGRIGVV
SRSGTLTYEAVAQLTEIGLGQSSAVGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEAEAAVWCKANMKKPIV
GFIAGVTAPAGKRMGHAGALISGGADTADAKLAIMEECGFTVTRNPSEMAKLLKALL
>Mature_296_residues
SIYINQHTKVITQGITGKTGQFHTRMCRDYANGKECFVAGVNPKKAGEDFEGIPIYANVTEAAQATGATVSVIYVPPAGA
AAAIWEAVEANLDLAICITEGIPVRDMLEVRNRMKAKEAAGGKRTLLLGPNCPGLITPEEIKIGIMPGHIHRKGRIGVVS
RSGTLTYEAVAQLTEIGLGQSSAVGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEAEAAVWCKANMKKPIVG
FIAGVTAPAGKRMGHAGALISGGADTADAKLAIMEECGFTVTRNPSEMAKLLKALL

Specific function: Unknown

COG id: COG0074

COG function: function code C; Succinyl-CoA synthetase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the succinate/malate CoA ligase alpha subunit family [H]

Homologues:

Organism=Homo sapiens, GI109452591, Length=291, Percent_Identity=51.8900343642612, Blast_Score=249, Evalue=2e-66,
Organism=Homo sapiens, GI38569423, Length=257, Percent_Identity=28.0155642023346, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI38569421, Length=257, Percent_Identity=28.0155642023346, Blast_Score=78, Evalue=1e-14,
Organism=Escherichia coli, GI1786949, Length=297, Percent_Identity=53.8720538720539, Blast_Score=302, Evalue=2e-83,
Organism=Caenorhabditis elegans, GI17550194, Length=292, Percent_Identity=52.7397260273973, Blast_Score=283, Evalue=7e-77,
Organism=Caenorhabditis elegans, GI17553126, Length=301, Percent_Identity=50.4983388704319, Blast_Score=273, Evalue=8e-74,
Organism=Caenorhabditis elegans, GI17557344, Length=240, Percent_Identity=27.0833333333333, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17551266, Length=255, Percent_Identity=25.4901960784314, Blast_Score=68, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6324716, Length=300, Percent_Identity=44.6666666666667, Blast_Score=247, Evalue=2e-66,
Organism=Drosophila melanogaster, GI21356559, Length=296, Percent_Identity=47.2972972972973, Blast_Score=274, Evalue=5e-74,
Organism=Drosophila melanogaster, GI28574296, Length=296, Percent_Identity=52.027027027027, Blast_Score=266, Evalue=1e-71,
Organism=Drosophila melanogaster, GI281363477, Length=254, Percent_Identity=26.3779527559055, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281363475, Length=254, Percent_Identity=26.3779527559055, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281363473, Length=254, Percent_Identity=26.3779527559055, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017440
- InterPro:   IPR003781
- InterPro:   IPR005810
- InterPro:   IPR005811
- InterPro:   IPR016040
- InterPro:   IPR016102 [H]

Pfam domain/function: PF02629 CoA_binding; PF00549 Ligase_CoA [H]

EC number: =6.2.1.5 [H]

Molecular weight: Translated: 31076; Mature: 30945

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS01216 SUCCINYL_COA_LIG_1 ; PS00399 SUCCINYL_COA_LIG_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYINQHTKVITQGITGKTGQFHTRMCRDYANGKECFVAGVNPKKAGEDFEGIPIYANV
CEEEEECCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCEEEEEEC
TEAAQATGATVSVIYVPPAGAAAAIWEAVEANLDLAICITEGIPVRDMLEVRNRMKAKEA
HHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
AGGKRTLLLGPNCPGLITPEEIKIGIMPGHIHRKGRIGVVSRSGTLTYEAVAQLTEIGLG
CCCCEEEEECCCCCCCCCCCCEEEEEECCCEECCCCEEEEECCCCCHHHHHHHHHHHCCC
QSSAVGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEAEAAVWCKANMKKPIV
CCCEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCHH
GFIAGVTAPAGKRMGHAGALISGGADTADAKLAIMEECGFTVTRNPSEMAKLLKALL
HHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEEEEHHCCCEEECCHHHHHHHHHHHC
>Mature Secondary Structure 
SIYINQHTKVITQGITGKTGQFHTRMCRDYANGKECFVAGVNPKKAGEDFEGIPIYANV
EEEEECCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCEEEEEEC
TEAAQATGATVSVIYVPPAGAAAAIWEAVEANLDLAICITEGIPVRDMLEVRNRMKAKEA
HHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
AGGKRTLLLGPNCPGLITPEEIKIGIMPGHIHRKGRIGVVSRSGTLTYEAVAQLTEIGLG
CCCCEEEEECCCCCCCCCCCCEEEEEECCCEECCCCEEEEECCCCCHHHHHHHHHHHCCC
QSSAVGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEAEAAVWCKANMKKPIV
CCCEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCHH
GFIAGVTAPAGKRMGHAGALISGGADTADAKLAIMEECGFTVTRNPSEMAKLLKALL
HHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEEEEHHCCCEEECCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]