| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is purB [H]
Identifier: 91790491
GI number: 91790491
Start: 4952145
End: 4953524
Strand: Direct
Name: purB [H]
Synonym: Bpro_4662
Alternate gene names: 91790491
Gene position: 4952145-4953524 (Clockwise)
Preceding gene: 91790489
Following gene: 91790494
Centisome position: 95.23
GC content: 61.67
Gene sequence:
>1380_bases ATGAGCTTTTCTACCATCAACGCCTTGTCTCCGCTGGACGGCCGCTACGCCGGCAAACTCAGCCAGTTACGTCCCCTGAT GTCCGAGCAAGGCTATATGCACCGCCGGGTCCAGGTGGAAGTGGCCTGGTTCATCGCCCTTTCGGACGCGAAGTTTGCCG AATTCAAGCCGCTCAGCCCCGGGGCGCGCACTTACCTGCTGGGCCTCGTCAAGAATTTCTCGGAAAACGATGCGGTGGCC ATCAAGGAGATTGAAAAAACCACCAACCACGACGTCAAGGCCGTGGAGTACTGGATCAAGTCCAAATTCGAAGCGCGGCC GGAATTGCAGGCGGCCGGTGAGTTTGTGCATTTCGCCTGCACCAGCGAAGACATCAACAACACCAGCCATGCGCTGCAGC TCAAAAGCAGCCGCGAGCTGGTACTGCTGCCGGCCCTGGACAAGGTGATTGCGCAGATGCGCAAGATGGCGCACACCTAC GCGGCGGAGCCCATGCTCAGCCGCACCCACGGCCAGACCGCCAGTCCGACCACGGTAGGCAAGGAAATCGCCAACGTGGT GGTGCGCCTGCAGGCGGCGCGCGAGAAAATCGCCGGCATCAGGCTGATGGCCAAAATGAACGGCGCCGTAGGCAACTACA ACGCCCATCTGTCGGCCTGGCCCGACTTTGACTGGGAAGCCTTCAGCCGCAACGTGATTGAAACGCCCGAGCCACTGGGC CTGGGCCTGACCTTCCAGCCCTACAGCATCCAGATCGAGCCGCATGACTACATGGCCGAGCTGTTTGACGCCGTCGCCCG CACCAACACCATCCTGATCGACTTTGCGCGGGACGTCTGGGGTTATGTGAGCGTGGGCTATTTCAAGCAGCGCCTCAAGG AGGGCGAAATCGGCTCCTCCACCATGCCGCACAAGGTGAACCCTATCGACTTTGAAAACGCCGAAGGCAACCTGGGCCTG GCCAATGCGCTGCTCAGGCACCTGAGCGAAAAGCTGCCGGTGTCCCGCTGGCAGCGCGACCTGACCGACTCGACCGTGCT GCGCAACATGGGCGTGGCGCTGGGTTACGCCGTGCTGGCCTACAACTCACTGGGCGTGGGGCTGGGCAAGCTGGAACTCA ACCGGGAAGCGCTGCAGGAGGACCTGGACAGCTCGTGGGAGGTGCTGGCCGAACCGATACAGACCGTCATGCGCCGCTAC GGCGTGCAGGGCGCCTACGAAAAGCTCAAGGAAGTAACGCGCGGTAAAACCGTCAAGGCTGAAGACCTGCATGCCCTGAT CCGGTCCCTGCAAATTCCTGATGCAGAAAAACAGCGCCTGCTGGCCATGACACCGGCCAGCTACGTCGGCCTGGCTGCCA CCCTGGCCAGACGGGTTTAA
Upstream 100 bases:
>100_bases CGACACGGCCCGAAGGCGAGCAAATCTGCCAGGTTTTGGGCACCCCCGCTGCCACCGCGCGACCGGGCCATTCCCCGGGC GACCAGCCTACAATTGCGGC
Downstream 100 bases:
>100_bases CGCCCCTTGTCGTTGTTGTCGCTGCTGCAGCGGCAGCGCTAAACCGGCATGGCTGCACCGCAATGCCAGCACTGCTCGAA CCCGCCTTCGACGGTTTCCC
Product: adenylosuccinate lyase
Products: NA
Alternate protein names: ASL; Adenylosuccinase; ASase [H]
Number of amino acids: Translated: 459; Mature: 458
Protein sequence:
>459_residues MSFSTINALSPLDGRYAGKLSQLRPLMSEQGYMHRRVQVEVAWFIALSDAKFAEFKPLSPGARTYLLGLVKNFSENDAVA IKEIEKTTNHDVKAVEYWIKSKFEARPELQAAGEFVHFACTSEDINNTSHALQLKSSRELVLLPALDKVIAQMRKMAHTY AAEPMLSRTHGQTASPTTVGKEIANVVVRLQAAREKIAGIRLMAKMNGAVGNYNAHLSAWPDFDWEAFSRNVIETPEPLG LGLTFQPYSIQIEPHDYMAELFDAVARTNTILIDFARDVWGYVSVGYFKQRLKEGEIGSSTMPHKVNPIDFENAEGNLGL ANALLRHLSEKLPVSRWQRDLTDSTVLRNMGVALGYAVLAYNSLGVGLGKLELNREALQEDLDSSWEVLAEPIQTVMRRY GVQGAYEKLKEVTRGKTVKAEDLHALIRSLQIPDAEKQRLLAMTPASYVGLAATLARRV
Sequences:
>Translated_459_residues MSFSTINALSPLDGRYAGKLSQLRPLMSEQGYMHRRVQVEVAWFIALSDAKFAEFKPLSPGARTYLLGLVKNFSENDAVA IKEIEKTTNHDVKAVEYWIKSKFEARPELQAAGEFVHFACTSEDINNTSHALQLKSSRELVLLPALDKVIAQMRKMAHTY AAEPMLSRTHGQTASPTTVGKEIANVVVRLQAAREKIAGIRLMAKMNGAVGNYNAHLSAWPDFDWEAFSRNVIETPEPLG LGLTFQPYSIQIEPHDYMAELFDAVARTNTILIDFARDVWGYVSVGYFKQRLKEGEIGSSTMPHKVNPIDFENAEGNLGL ANALLRHLSEKLPVSRWQRDLTDSTVLRNMGVALGYAVLAYNSLGVGLGKLELNREALQEDLDSSWEVLAEPIQTVMRRY GVQGAYEKLKEVTRGKTVKAEDLHALIRSLQIPDAEKQRLLAMTPASYVGLAATLARRV >Mature_458_residues SFSTINALSPLDGRYAGKLSQLRPLMSEQGYMHRRVQVEVAWFIALSDAKFAEFKPLSPGARTYLLGLVKNFSENDAVAI KEIEKTTNHDVKAVEYWIKSKFEARPELQAAGEFVHFACTSEDINNTSHALQLKSSRELVLLPALDKVIAQMRKMAHTYA AEPMLSRTHGQTASPTTVGKEIANVVVRLQAAREKIAGIRLMAKMNGAVGNYNAHLSAWPDFDWEAFSRNVIETPEPLGL GLTFQPYSIQIEPHDYMAELFDAVARTNTILIDFARDVWGYVSVGYFKQRLKEGEIGSSTMPHKVNPIDFENAEGNLGLA NALLRHLSEKLPVSRWQRDLTDSTVLRNMGVALGYAVLAYNSLGVGLGKLELNREALQEDLDSSWEVLAEPIQTVMRRYG VQGAYEKLKEVTRGKTVKAEDLHALIRSLQIPDAEKQRLLAMTPASYVGLAATLARRV
Specific function: De novo purine biosynthesis; eighth step. [C]
COG id: COG0015
COG function: function code F; Adenylosuccinate lyase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787376, Length=456, Percent_Identity=57.6754385964912, Blast_Score=549, Evalue=1e-157, Organism=Drosophila melanogaster, GI24647570, Length=335, Percent_Identity=27.1641791044776, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013539 - InterPro: IPR000362 - InterPro: IPR020557 - InterPro: IPR008948 - InterPro: IPR022761 - InterPro: IPR004769 [H]
Pfam domain/function: PF08328 ASL_C; PF00206 Lyase_1 [H]
EC number: =4.3.2.2 [H]
Molecular weight: Translated: 51132; Mature: 51001
Theoretical pI: Translated: 7.86; Mature: 7.86
Prosite motif: PS00163 FUMARATE_LYASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFSTINALSPLDGRYAGKLSQLRPLMSEQGYMHRRVQVEVAWFIALSDAKFAEFKPLSP CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCC GARTYLLGLVKNFSENDAVAIKEIEKTTNHDVKAVEYWIKSKFEARPELQAAGEFVHFAC CHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHCCCEEEEEE TSEDINNTSHALQLKSSRELVLLPALDKVIAQMRKMAHTYAAEPMLSRTHGQTASPTTVG CCCCCCCCHHEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHH KEIANVVVRLQAAREKIAGIRLMAKMNGAVGNYNAHLSAWPDFDWEAFSRNVIETPEPLG HHHHHHHHHHHHHHHHHHHHHHEEHHCCCCCCCCCCEECCCCCCHHHHCCCCCCCCCCCC LGLTFQPYSIQIEPHDYMAELFDAVARTNTILIDFARDVWGYVSVGYFKQRLKEGEIGSS CCEEECCCEEEECCHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCC TMPHKVNPIDFENAEGNLGLANALLRHLSEKLPVSRWQRDLTDSTVLRNMGVALGYAVLA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YNSLGVGLGKLELNREALQEDLDSSWEVLAEPIQTVMRRYGVQGAYEKLKEVTRGKTVKA HHHCCCCCCHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCH EDLHALIRSLQIPDAEKQRLLAMTPASYVGLAATLARRV HHHHHHHHHHCCCCHHHCCEEEECCHHHHHHHHHHHHCC >Mature Secondary Structure SFSTINALSPLDGRYAGKLSQLRPLMSEQGYMHRRVQVEVAWFIALSDAKFAEFKPLSP CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCC GARTYLLGLVKNFSENDAVAIKEIEKTTNHDVKAVEYWIKSKFEARPELQAAGEFVHFAC CHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHCCCEEEEEE TSEDINNTSHALQLKSSRELVLLPALDKVIAQMRKMAHTYAAEPMLSRTHGQTASPTTVG CCCCCCCCHHEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHH KEIANVVVRLQAAREKIAGIRLMAKMNGAVGNYNAHLSAWPDFDWEAFSRNVIETPEPLG HHHHHHHHHHHHHHHHHHHHHHEEHHCCCCCCCCCCEECCCCCCHHHHCCCCCCCCCCCC LGLTFQPYSIQIEPHDYMAELFDAVARTNTILIDFARDVWGYVSVGYFKQRLKEGEIGSS CCEEECCCEEEECCHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCC TMPHKVNPIDFENAEGNLGLANALLRHLSEKLPVSRWQRDLTDSTVLRNMGVALGYAVLA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YNSLGVGLGKLELNREALQEDLDSSWEVLAEPIQTVMRRYGVQGAYEKLKEVTRGKTVKA HHHCCCCCCHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCH EDLHALIRSLQIPDAEKQRLLAMTPASYVGLAATLARRV HHHHHHHHHHCCCCHHHCCEEEECCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]