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The map label for this gene is ybbN [H]

Identifier: 91790457

GI number: 91790457

Start: 4908225

End: 4909250

Strand: Direct

Name: ybbN [H]

Synonym: Bpro_4628

Alternate gene names: 91790457

Gene position: 4908225-4909250 (Clockwise)

Preceding gene: 91790453

Following gene: 91790462

Centisome position: 94.38

GC content: 60.23

Gene sequence:

>1026_bases
ATGCCGCGATGCATGCTATCGTCTGACCTGCCGTGGATGGCCCCCGCCCGGGTGCGCGCCACAAAGCATTTGACAAGCCG
CCCGCCGGCTGAAAACATCCTTCTAACCCCCATTTTTTGCCGCATCATGATTGACGTCACCCTTGCCAACTTTGAAGCGG
AAGTCGTTGCCGCTTCCATGACCACCCCCGTGCTGATTGATTTCTGGGCGCCCTGGTGCGGCCCCTGCAAGTCGCTCGGG
CCCATCCTGGAAAAGGTCGAGGTGGCCTACGCCGGGCGCTTCAAGCTGGTGAAGATCGATTCCGACCAGGAGCAGCAACT
CGGCGCGGCCTTCGGCATCCGCAGCATTCCCACCTGCATCCTGATGATGAACGGCCAGCCGGTGGATGGCTTTGCCGGCG
CCCTGACCGAAGGCAAGGTCAAGGAGTTTCTGGACAAGCATTTGCCGCCGGCGGAGGAACAGCCTGAAGAGCAGGAGCTT
CAACTTGAAGAAGAAAGCACAGACCCCGCCGCCATCCTCGAAAAACTGCAACATGCCGTGGCGACCGACCCCGCCGACCA
CAACGCCCGCTTCGACTACGTCAAGCTGCTGCTGACCCTGGGACACGAAGACGACGCCAAGGTGGCCTTTGCACCGGTGA
TTTCCCAAACGTCGGTGGTGCGGCGTTTTGACTCGCTCAAACGCTGGATGGATGCTATTGATTTTGTAGCCATTAATGCA
CTCGGAGAAAGCGCATCAGCCGGATTTGATGCAAAAATCGCCGCCAACAAGCGGGACTTTGAAGCCCGCTTTGACAAGGC
CCGCTGGCTGATGACGCAACAGCACTGGACCGAGGCACTGGACGAGCTGCTGGAGATCCTGATGCGCGACAAAAGCTGGA
ACGAGGAGCTGGCGCGCAAGACCTACATCGCCGTGCTCGACATCATGGAAACGCCCAAACCCAAGGTGGCCGACGGGCAG
ATTCCGCCCGAGGACCCCACGGTGGCCACCTACCGGCGCCGCCTGAGCAGCGTGATCTTGAGTTAA

Upstream 100 bases:

>100_bases
ACCGGATTGTGCGTTGTCATAGTGGACTTTCAAGCCAAGAATTCTGCAAGTTCTGCGGGCGACTGCGCGCCCGGAACCTT
TGATTTTAAGGGCTCGGGCC

Downstream 100 bases:

>100_bases
CCCCCGTGGAGGCCTTCGGCCTCCTCCCCCTCGCAGGGGGCGGCGCCTAGGGCCGGCAAAGCCGGACCCTGGCCCCCACT
GGGTTTGATGTCTTGTTAAG

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MPRCMLSSDLPWMAPARVRATKHLTSRPPAENILLTPIFCRIMIDVTLANFEAEVVAASMTTPVLIDFWAPWCGPCKSLG
PILEKVEVAYAGRFKLVKIDSDQEQQLGAAFGIRSIPTCILMMNGQPVDGFAGALTEGKVKEFLDKHLPPAEEQPEEQEL
QLEEESTDPAAILEKLQHAVATDPADHNARFDYVKLLLTLGHEDDAKVAFAPVISQTSVVRRFDSLKRWMDAIDFVAINA
LGESASAGFDAKIAANKRDFEARFDKARWLMTQQHWTEALDELLEILMRDKSWNEELARKTYIAVLDIMETPKPKVADGQ
IPPEDPTVATYRRRLSSVILS

Sequences:

>Translated_341_residues
MPRCMLSSDLPWMAPARVRATKHLTSRPPAENILLTPIFCRIMIDVTLANFEAEVVAASMTTPVLIDFWAPWCGPCKSLG
PILEKVEVAYAGRFKLVKIDSDQEQQLGAAFGIRSIPTCILMMNGQPVDGFAGALTEGKVKEFLDKHLPPAEEQPEEQEL
QLEEESTDPAAILEKLQHAVATDPADHNARFDYVKLLLTLGHEDDAKVAFAPVISQTSVVRRFDSLKRWMDAIDFVAINA
LGESASAGFDAKIAANKRDFEARFDKARWLMTQQHWTEALDELLEILMRDKSWNEELARKTYIAVLDIMETPKPKVADGQ
IPPEDPTVATYRRRLSSVILS
>Mature_340_residues
PRCMLSSDLPWMAPARVRATKHLTSRPPAENILLTPIFCRIMIDVTLANFEAEVVAASMTTPVLIDFWAPWCGPCKSLGP
ILEKVEVAYAGRFKLVKIDSDQEQQLGAAFGIRSIPTCILMMNGQPVDGFAGALTEGKVKEFLDKHLPPAEEQPEEQELQ
LEEESTDPAAILEKLQHAVATDPADHNARFDYVKLLLTLGHEDDAKVAFAPVISQTSVVRRFDSLKRWMDAIDFVAINAL
GESASAGFDAKIAANKRDFEARFDKARWLMTQQHWTEALDELLEILMRDKSWNEELARKTYIAVLDIMETPKPKVADGQI
PPEDPTVATYRRRLSSVILS

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=124, Percent_Identity=37.9032258064516, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI87081747, Length=307, Percent_Identity=30.6188925081433, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1788936, Length=107, Percent_Identity=41.1214953271028, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082331, Length=106, Percent_Identity=40.5660377358491, Blast_Score=93, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI212646193, Length=99, Percent_Identity=35.3535353535354, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25144092, Length=138, Percent_Identity=29.7101449275362, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17509965, Length=80, Percent_Identity=36.25, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28573567, Length=114, Percent_Identity=35.0877192982456, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24664269, Length=118, Percent_Identity=29.6610169491525, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24639826, Length=84, Percent_Identity=30.952380952381, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17648013, Length=86, Percent_Identity=34.8837209302326, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24583090, Length=86, Percent_Identity=34.8837209302326, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 38115; Mature: 37984

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRCMLSSDLPWMAPARVRATKHLTSRPPAENILLTPIFCRIMIDVTLANFEAEVVAASM
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCCHHHEEECC
TTPVLIDFWAPWCGPCKSLGPILEKVEVAYAGRFKLVKIDSDQEQQLGAAFGIRSIPTCI
CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCHHHCCEEE
LMMNGQPVDGFAGALTEGKVKEFLDKHLPPAEEQPEEQELQLEEESTDPAAILEKLQHAV
EEECCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHH
ATDPADHNARFDYVKLLLTLGHEDDAKVAFAPVISQTSVVRRFDSLKRWMDAIDFVAINA
HCCCCCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGESASAGFDAKIAANKRDFEARFDKARWLMTQQHWTEALDELLEILMRDKSWNEELARK
CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
TYIAVLDIMETPKPKVADGQIPPEDPTVATYRRRLSSVILS
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PRCMLSSDLPWMAPARVRATKHLTSRPPAENILLTPIFCRIMIDVTLANFEAEVVAASM
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCCHHHEEECC
TTPVLIDFWAPWCGPCKSLGPILEKVEVAYAGRFKLVKIDSDQEQQLGAAFGIRSIPTCI
CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCHHHCCEEE
LMMNGQPVDGFAGALTEGKVKEFLDKHLPPAEEQPEEQELQLEEESTDPAAILEKLQHAV
EEECCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHH
ATDPADHNARFDYVKLLLTLGHEDDAKVAFAPVISQTSVVRRFDSLKRWMDAIDFVAINA
HCCCCCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGESASAGFDAKIAANKRDFEARFDKARWLMTQQHWTEALDELLEILMRDKSWNEELARK
CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
TYIAVLDIMETPKPKVADGQIPPEDPTVATYRRRLSSVILS
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]