| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91790433
Identifier: 91790433
GI number: 91790433
Start: 4884187
End: 4884693
Strand: Reverse
Name: 91790433
Synonym: Bpro_4604
Alternate gene names: NA
Gene position: 4884693-4884187 (Counterclockwise)
Preceding gene: 91790434
Following gene: 91790430
Centisome position: 93.93
GC content: 63.91
Gene sequence:
>507_bases ATGCAGCGTCGCGCTTTACTGTCACTGACGGCTTCCGCCGCCGCCCTGAGCCTGGCTGGCTGTGGTTTTCAGCTGCGCAA GGCGCCCGACTACGCCTTCACAACCCTGTTCAGCGGCCTTCCCGAATCATCGCCGCTGGGCGTGGAATTGCGGCGCTCGC TGGAGTCCACCCGCAAGGTCAAGGTGATCACCGACGGCCGGCAGATCAAGGATGCGCAGGTCATTCTGGATGTGCTGGGC GACCAGCGGGAAAAGCAGGTGCTCAGCCGCAACGCCTCCGGCCAGGTGCGCGAGTTCCAGTTGCGCATGCGTTTTCGTTT CAAGCTGCGCACGCTGGCGGGCAAGGAGCTGATTCCGGAGACCGAGATCCTGCAGCAGCGCGACATCAGCTTCAACGAGT CCGCCGTGCTGGCCAAGGAGGCGGAGGAGAACCTGCTTTACCGCGACATGCAAAGCGACATCGTCCAGCAGGTCCTGCGC CGCCTGGCGGCCGTGACGGAAATCTAG
Upstream 100 bases:
>100_bases CCGGCCAAAAAGGTCATCGTGGTGCCTGGCCGGCTGGTCAACATCGTTGTCTGAGATCACCCCAAGATAGTCCCAAGATA ATCCCAAGACAAGGCAAACC
Downstream 100 bases:
>100_bases GCGCTACCGGGCGCCGGCCCTTCGCACTAGCGCCGCATCAGCGTGCTCTTGCCGAACAGGCTTTCCATCAGGTCCAGTGC CACTTCGGCCGTGCCGTTGC
Product: rare lipoprotein B
Products: NA
Alternate protein names: Lipoprotein; Lipoprotein B; Lipoprotein B Transmembrane; Lipoprotein B Transmembrane Protein; Lipoprotein B Transmembrane; Rare Lipoprotein B Family
Number of amino acids: Translated: 168; Mature: 168
Protein sequence:
>168_residues MQRRALLSLTASAAALSLAGCGFQLRKAPDYAFTTLFSGLPESSPLGVELRRSLESTRKVKVITDGRQIKDAQVILDVLG DQREKQVLSRNASGQVREFQLRMRFRFKLRTLAGKELIPETEILQQRDISFNESAVLAKEAEENLLYRDMQSDIVQQVLR RLAAVTEI
Sequences:
>Translated_168_residues MQRRALLSLTASAAALSLAGCGFQLRKAPDYAFTTLFSGLPESSPLGVELRRSLESTRKVKVITDGRQIKDAQVILDVLG DQREKQVLSRNASGQVREFQLRMRFRFKLRTLAGKELIPETEILQQRDISFNESAVLAKEAEENLLYRDMQSDIVQQVLR RLAAVTEI >Mature_168_residues MQRRALLSLTASAAALSLAGCGFQLRKAPDYAFTTLFSGLPESSPLGVELRRSLESTRKVKVITDGRQIKDAQVILDVLG DQREKQVLSRNASGQVREFQLRMRFRFKLRTLAGKELIPETEILQQRDISFNESAVLAKEAEENLLYRDMQSDIVQQVLR RLAAVTEI
Specific function: Unknown
COG id: COG2980
COG function: function code M; Rare lipoprotein B
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18950; Mature: 18950
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRRALLSLTASAAALSLAGCGFQLRKAPDYAFTTLFSGLPESSPLGVELRRSLESTRKV CCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCEE KVITDGRQIKDAQVILDVLGDQREKQVLSRNASGQVREFQLRMRFRFKLRTLAGKELIPE EEEECCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH TEILQQRDISFNESAVLAKEAEENLLYRDMQSDIVQQVLRRLAAVTEI HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQRRALLSLTASAAALSLAGCGFQLRKAPDYAFTTLFSGLPESSPLGVELRRSLESTRKV CCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCEE KVITDGRQIKDAQVILDVLGDQREKQVLSRNASGQVREFQLRMRFRFKLRTLAGKELIPE EEEECCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH TEILQQRDISFNESAVLAKEAEENLLYRDMQSDIVQQVLRRLAAVTEI HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA