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The map label for this gene is yfdE [H]

Identifier: 91790385

GI number: 91790385

Start: 4818461

End: 4819642

Strand: Direct

Name: yfdE [H]

Synonym: Bpro_4555

Alternate gene names: 91790385

Gene position: 4818461-4819642 (Clockwise)

Preceding gene: 91790384

Following gene: 91790386

Centisome position: 92.66

GC content: 62.61

Gene sequence:

>1182_bases
ATGCAACCTCTCAAAGGCATTACCGTCGTCACCCTGGAGCACGCGATTGCTGCGCCCTTTGCCACGCGCCAGCTGGCCGA
CCTGGGCGCACGCGTCATCAAAATCGAGCGCCCCGGCGTGGGCGACTTTGCGCGCGGCTATGACGAACGCGTGCGTGGCC
TGGCCTCGCATTTCGTCTGGACCAACCGTTCCAAGGAAAGCCTCACGCTCGATGTGAAGCATGACGAGGCACAAAAAATC
CTGCGGCGCCTCATTCTGGAAGAGGCCGACGTGGTGGTGCAAAACCTCGCACCCGGCGCAGCAGCGCGTCTGGGCTTGTC
GTATGAAGCGCTGGCCAAACTCAAGCCCGGCATCATCGTCTGCGACATCTCGGGCTATGGCAGCGACGGGCCCTACCGCG
ACAAAAAAGCCTATGACCTGCTGATTCAAAGCGAAGCGGGTTTTGTGTCGGTCACTGGCACACCCGACACGCCCTCCAAG
GCTGGCCCCTCGATCGCCGACATTGCCGCAGGCATGTACGCCTACACCAACATTCTGGCGGCACTGATGCATCGCCAGCA
AACCGGCGAAGGCCAACGCATCGACGTGTCCATGCTGGAGTCGCTCACCGAATGGATGAACTACCCGCTGTACTACGCCT
TTGAGGGCGCTGCCCCGCCACCTCGCGCCGGTGCCAGCCACGCCACCATTTATCCCTATGGCCCCTTTCCTGCGGGTGAC
GGCAAGACCGTGATGCTGGGTCTGCAAAACGAGCGAGAGTGGAAAGTGTTTTGCGAAAAAGTCTTGTTGCAGCCCGCGCT
GGCCAGCGACAAACGCTTTTTAAGCAACGCCAAGCGCAGCACAGAGCGAGCCGTGCTCTCTGCCTTGATCATCGAAGCCT
TTTCACATCTCACGGCCCAGCAGGTGGCGCAGCGGCTGGAGCAGGCCGGTATTGCCAACGCGCAGGTCAACACCATGAGC
GAGGTGTGGGCGCACCCGCAGCTCAGGGCTCGCGATCGCTGGCATGAGGTGGCCACACCCGCAGGGCCGATTCCTGCCCT
GCTGCCACCGGGCTCCTGGCAACATGGCGCGCCGCGCATGGATGCCGTGCCCGCACTGGGCCAGCACACCGATGCGATCC
TGGGCCACTATGGTTACAGCGCAGAGCGCATTGCGGATCTGCGCGCTGAAGGTGTCGTGTGA

Upstream 100 bases:

>100_bases
CGTCAGCTGATGGCAAAACCGTGCGTCTGTGGGGCCGCGACCATGAAGGCTGGCTCACGATGGATGCCACCGCCACCCTG
GCTTGAATACGAAACGAACC

Downstream 100 bases:

>100_bases
CCATGCCTGACTGCGAACCCCTGATCTACCTGTTCGTGCCCGGCAACCGCCCCGAGCGCTTCACCAAGGCGCTGGCCTCG
GGGGCTGACCGCATCATCAT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MQPLKGITVVTLEHAIAAPFATRQLADLGARVIKIERPGVGDFARGYDERVRGLASHFVWTNRSKESLTLDVKHDEAQKI
LRRLILEEADVVVQNLAPGAAARLGLSYEALAKLKPGIIVCDISGYGSDGPYRDKKAYDLLIQSEAGFVSVTGTPDTPSK
AGPSIADIAAGMYAYTNILAALMHRQQTGEGQRIDVSMLESLTEWMNYPLYYAFEGAAPPPRAGASHATIYPYGPFPAGD
GKTVMLGLQNEREWKVFCEKVLLQPALASDKRFLSNAKRSTERAVLSALIIEAFSHLTAQQVAQRLEQAGIANAQVNTMS
EVWAHPQLRARDRWHEVATPAGPIPALLPPGSWQHGAPRMDAVPALGQHTDAILGHYGYSAERIADLRAEGVV

Sequences:

>Translated_393_residues
MQPLKGITVVTLEHAIAAPFATRQLADLGARVIKIERPGVGDFARGYDERVRGLASHFVWTNRSKESLTLDVKHDEAQKI
LRRLILEEADVVVQNLAPGAAARLGLSYEALAKLKPGIIVCDISGYGSDGPYRDKKAYDLLIQSEAGFVSVTGTPDTPSK
AGPSIADIAAGMYAYTNILAALMHRQQTGEGQRIDVSMLESLTEWMNYPLYYAFEGAAPPPRAGASHATIYPYGPFPAGD
GKTVMLGLQNEREWKVFCEKVLLQPALASDKRFLSNAKRSTERAVLSALIIEAFSHLTAQQVAQRLEQAGIANAQVNTMS
EVWAHPQLRARDRWHEVATPAGPIPALLPPGSWQHGAPRMDAVPALGQHTDAILGHYGYSAERIADLRAEGVV
>Mature_393_residues
MQPLKGITVVTLEHAIAAPFATRQLADLGARVIKIERPGVGDFARGYDERVRGLASHFVWTNRSKESLTLDVKHDEAQKI
LRRLILEEADVVVQNLAPGAAARLGLSYEALAKLKPGIIVCDISGYGSDGPYRDKKAYDLLIQSEAGFVSVTGTPDTPSK
AGPSIADIAAGMYAYTNILAALMHRQQTGEGQRIDVSMLESLTEWMNYPLYYAFEGAAPPPRAGASHATIYPYGPFPAGD
GKTVMLGLQNEREWKVFCEKVLLQPALASDKRFLSNAKRSTERAVLSALIIEAFSHLTAQQVAQRLEQAGIANAQVNTMS
EVWAHPQLRARDRWHEVATPAGPIPALLPPGSWQHGAPRMDAVPALGQHTDAILGHYGYSAERIADLRAEGVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=400, Percent_Identity=32, Blast_Score=205, Evalue=7e-53,
Organism=Homo sapiens, GI300863124, Length=329, Percent_Identity=32.8267477203647, Blast_Score=196, Evalue=2e-50,
Organism=Homo sapiens, GI13376042, Length=329, Percent_Identity=28.8753799392097, Blast_Score=156, Evalue=3e-38,
Organism=Homo sapiens, GI300863126, Length=399, Percent_Identity=29.3233082706767, Blast_Score=155, Evalue=7e-38,
Organism=Homo sapiens, GI266456254, Length=397, Percent_Identity=27.2040302267003, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI42794625, Length=397, Percent_Identity=27.2040302267003, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI266458393, Length=199, Percent_Identity=33.1658291457286, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI266458397, Length=199, Percent_Identity=33.6683417085427, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI266458395, Length=137, Percent_Identity=33.5766423357664, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI42822893, Length=137, Percent_Identity=33.5766423357664, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI87082093, Length=346, Percent_Identity=31.7919075144509, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1788717, Length=411, Percent_Identity=29.9270072992701, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI1786222, Length=405, Percent_Identity=28.3950617283951, Blast_Score=116, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI32564160, Length=215, Percent_Identity=28.8372093023256, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115535051, Length=267, Percent_Identity=27.3408239700375, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24648431, Length=401, Percent_Identity=33.6658354114713, Blast_Score=209, Evalue=2e-54,
Organism=Drosophila melanogaster, GI24585488, Length=200, Percent_Identity=27.5, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42678; Mature: 42678

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPLKGITVVTLEHAIAAPFATRQLADLGARVIKIERPGVGDFARGYDERVRGLASHFVW
CCCCCCCEEEEEHHHHHCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
TNRSKESLTLDVKHDEAQKILRRLILEEADVVVQNLAPGAAARLGLSYEALAKLKPGIIV
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCCCEEE
CDISGYGSDGPYRDKKAYDLLIQSEAGFVSVTGTPDTPSKAGPSIADIAAGMYAYTNILA
EEECCCCCCCCCCCCHHHEEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
ALMHRQQTGEGQRIDVSMLESLTEWMNYPLYYAFEGAAPPPRAGASHATIYPYGPFPAGD
HHHHHHHCCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCC
GKTVMLGLQNEREWKVFCEKVLLQPALASDKRFLSNAKRSTERAVLSALIIEAFSHLTAQ
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVAQRLEQAGIANAQVNTMSEVWAHPQLRARDRWHEVATPAGPIPALLPPGSWQHGAPRM
HHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
DAVPALGQHTDAILGHYGYSAERIADLRAEGVV
CCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MQPLKGITVVTLEHAIAAPFATRQLADLGARVIKIERPGVGDFARGYDERVRGLASHFVW
CCCCCCCEEEEEHHHHHCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
TNRSKESLTLDVKHDEAQKILRRLILEEADVVVQNLAPGAAARLGLSYEALAKLKPGIIV
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCCCEEE
CDISGYGSDGPYRDKKAYDLLIQSEAGFVSVTGTPDTPSKAGPSIADIAAGMYAYTNILA
EEECCCCCCCCCCCCHHHEEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
ALMHRQQTGEGQRIDVSMLESLTEWMNYPLYYAFEGAAPPPRAGASHATIYPYGPFPAGD
HHHHHHHCCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCC
GKTVMLGLQNEREWKVFCEKVLLQPALASDKRFLSNAKRSTERAVLSALIIEAFSHLTAQ
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVAQRLEQAGIANAQVNTMSEVWAHPQLRARDRWHEVATPAGPIPALLPPGSWQHGAPRM
HHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
DAVPALGQHTDAILGHYGYSAERIADLRAEGVV
CCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]