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The map label for this gene is sdsB [H]

Identifier: 91790357

GI number: 91790357

Start: 4784704

End: 4785606

Strand: Direct

Name: sdsB [H]

Synonym: Bpro_4525

Alternate gene names: 91790357

Gene position: 4784704-4785606 (Clockwise)

Preceding gene: 91790354

Following gene: 91790360

Centisome position: 92.01

GC content: 69.1

Gene sequence:

>903_bases
ATGAACCTCCAACACCTCGAACACCTGCTCGCCGTGGCCGAGACCGGTTCTTTCAGCCGCGCTGCCGAGCAGCAGCATCT
GACGCAGTCGGCCCTGAGCCGCAGCATCCAGACCCTGGAAGGCGACCTGGGCGCGCGCCTGATCGACCGCACTGGCAAGC
GCAACGAGCTCACGCCGCTGGGCCAGGCCGTCGCCGTGCGCGCCCGGCGCATGGTGTTCGAGGCGGCCGAGCTGCGCCGC
AGTGCCGAGCTGCTCAAGCAAGGCGACCTGGGCGCCATCCGCATCGGCCTAGGTTCGGGGCCGGGCGTGATGCTGATGAC
GCCGTTTCTCGTATACATGGCCCAGCACCATCCGGGCGTGCAGGTCAGCGTGTCGCCGGGCGCGACGGAGTTGCAGCTGA
TGCTGCTGCGCCAGCGCACACTTGACGCGCTGGTCATCGACGTTCGCCGCATCGCGCCGGCACCCGACCTGGCCATCGAG
AACCTGACCGAACTGCGCGCAGGCTTTGTCTGCCGCAGCGGCCACCCCTTGCTGCAGGCCGGCAGGCCCGTGTCTTTTGA
CGAGATGCTGCGCTACCCGCTGGCCTCGACGCCGCTCAGCGCGGAAGTGGCGCATAGGCTGGTCAACCGCTTCGGGCCGC
GGGCCGACCCGCAGCAGGCCGTGAGCCTGCGTTGCGACGACATCACGAGCCTGATCGAAACGGTCAAGGCCTCGGACGCG
ATCTACCAGGGCATCGTGGCGGCTGCACGCGCCGGCATCGAGGCTGGACAGCTGGCCGAACTGGCGACCGAGCCGCCGTT
GGCCATTGGCGCGCGCTTTGCGTTCGTCACGCTGGCCGGGCGCACCGAGGCGCCGTCGATGGGTTTGTTTCGCCAGTTTG
TGGCTGAGCGGCTGCGCGACTGA

Upstream 100 bases:

>100_bases
TGGGGGATGCACTTGAGGATGCTAGACATCCCGAACTAATGTGTCCAATGCATTATTTTTGTGATTAGTATTCGTATTAC
TCATTCAATTCGCCTGCACC

Downstream 100 bases:

>100_bases
ATGTCAGCAGACATCCGATCAGGTGCAACCCAGCGGCAGCATCGGGCCGCTGCTGCATGCATGGCACCGAGTCCCGGCGC
GGTTCCCGTATCAGCTTGCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNLQHLEHLLAVAETGSFSRAAEQQHLTQSALSRSIQTLEGDLGARLIDRTGKRNELTPLGQAVAVRARRMVFEAAELRR
SAELLKQGDLGAIRIGLGSGPGVMLMTPFLVYMAQHHPGVQVSVSPGATELQLMLLRQRTLDALVIDVRRIAPAPDLAIE
NLTELRAGFVCRSGHPLLQAGRPVSFDEMLRYPLASTPLSAEVAHRLVNRFGPRADPQQAVSLRCDDITSLIETVKASDA
IYQGIVAAARAGIEAGQLAELATEPPLAIGARFAFVTLAGRTEAPSMGLFRQFVAERLRD

Sequences:

>Translated_300_residues
MNLQHLEHLLAVAETGSFSRAAEQQHLTQSALSRSIQTLEGDLGARLIDRTGKRNELTPLGQAVAVRARRMVFEAAELRR
SAELLKQGDLGAIRIGLGSGPGVMLMTPFLVYMAQHHPGVQVSVSPGATELQLMLLRQRTLDALVIDVRRIAPAPDLAIE
NLTELRAGFVCRSGHPLLQAGRPVSFDEMLRYPLASTPLSAEVAHRLVNRFGPRADPQQAVSLRCDDITSLIETVKASDA
IYQGIVAAARAGIEAGQLAELATEPPLAIGARFAFVTLAGRTEAPSMGLFRQFVAERLRD
>Mature_300_residues
MNLQHLEHLLAVAETGSFSRAAEQQHLTQSALSRSIQTLEGDLGARLIDRTGKRNELTPLGQAVAVRARRMVFEAAELRR
SAELLKQGDLGAIRIGLGSGPGVMLMTPFLVYMAQHHPGVQVSVSPGATELQLMLLRQRTLDALVIDVRRIAPAPDLAIE
NLTELRAGFVCRSGHPLLQAGRPVSFDEMLRYPLASTPLSAEVAHRLVNRFGPRADPQQAVSLRCDDITSLIETVKASDA
IYQGIVAAARAGIEAGQLAELATEPPLAIGARFAFVTLAGRTEAPSMGLFRQFVAERLRD

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=242, Percent_Identity=28.9256198347107, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI157672245, Length=274, Percent_Identity=29.1970802919708, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787879, Length=143, Percent_Identity=33.5664335664336, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082024, Length=184, Percent_Identity=26.6304347826087, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1790399, Length=148, Percent_Identity=31.0810810810811, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693193, Length=210, Percent_Identity=29.5238095238095, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI2367136, Length=170, Percent_Identity=28.8235294117647, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32449; Mature: 32449

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLQHLEHLLAVAETGSFSRAAEQQHLTQSALSRSIQTLEGDLGARLIDRTGKRNELTPL
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
GQAVAVRARRMVFEAAELRRSAELLKQGDLGAIRIGLGSGPGVMLMTPFLVYMAQHHPGV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
QVSVSPGATELQLMLLRQRTLDALVIDVRRIAPAPDLAIENLTELRAGFVCRSGHPLLQA
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEECCCCCHHHC
GRPVSFDEMLRYPLASTPLSAEVAHRLVNRFGPRADPQQAVSLRCDDITSLIETVKASDA
CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IYQGIVAAARAGIEAGQLAELATEPPLAIGARFAFVTLAGRTEAPSMGLFRQFVAERLRD
HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLQHLEHLLAVAETGSFSRAAEQQHLTQSALSRSIQTLEGDLGARLIDRTGKRNELTPL
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
GQAVAVRARRMVFEAAELRRSAELLKQGDLGAIRIGLGSGPGVMLMTPFLVYMAQHHPGV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
QVSVSPGATELQLMLLRQRTLDALVIDVRRIAPAPDLAIENLTELRAGFVCRSGHPLLQA
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEECCCCCHHHC
GRPVSFDEMLRYPLASTPLSAEVAHRLVNRFGPRADPQQAVSLRCDDITSLIETVKASDA
CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IYQGIVAAARAGIEAGQLAELATEPPLAIGARFAFVTLAGRTEAPSMGLFRQFVAERLRD
HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]