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The map label for this gene is kdgR [H]

Identifier: 91790347

GI number: 91790347

Start: 4771227

End: 4771955

Strand: Direct

Name: kdgR [H]

Synonym: Bpro_4515

Alternate gene names: 91790347

Gene position: 4771227-4771955 (Clockwise)

Preceding gene: 91790342

Following gene: 91790348

Centisome position: 91.75

GC content: 68.86

Gene sequence:

>729_bases
ATGCCCCGCAAAGCCCACACCGAATCCCTGGCCGACAGCCATGCCGCGCCCGGTGGCGCCGCGGCGGTAGACCGCGCGCT
GACCCTGCTGTGCGCTTTTCAGCAGGGCGATACCGCCTTGAGCCTGGCCGAACTGGCCAGCCGCACCCAGCTCTACAAGA
GCACGGCGCTGCGTTTGTTGGCCTCGCTGGAACACGCGCGGCTGATTCAAAAACTGGAGGACGGCCGCTACGGGCTGGGC
AGCGAGGTGGCGCGGCTCAATGCGATTTACGCCGCCTCCTTTTCACTGGATCGCGTGGTGCTGCCCGTGATGCGGGCGCT
GGTGGCGGCCACCCGCGAGAGCGCCGCCTACCATGTGGCGCAGGGCGATGCGCGGCTGTGCCTGTACCGGGTGGATTCAC
CCCACCCGATCCGCGACCACATCAAGGCCGGTGACGTGCTGCCGCTGGACCGCGGCACGGGCGGCCGGGTGCTGATGGCC
TTTGGCCCCCGGCGCACCACCGGCCTCAGCGCCAAAGACAAAAACCTCCATGCCCGCATCCGGGAGCAGGGTTACTTCTC
GGCCATGGGCGACCGCCTGGCCGGCGTGGCCGGCATTTCGGCGCCGGTGTTCAAGGCCGACGGCAGCCTGGCGGCAGCCT
TGACGCTGACCATGCCGACAGAGCGCTATGACGAACGCCACGTTCAGAAGGTGCTGGAGGCCGCCCGCAAGCTGAGCGGC
CAGGTTTGA

Upstream 100 bases:

>100_bases
GTAAGATAGAACGTCGTTCTTTCTGTTGAAATAATCACTGAAGCTCGGACGCTTGTCAAGCGTCCAGCGGCAAGGTCCGC
TTCATGATCAGGAGTTACCG

Downstream 100 bases:

>100_bases
GCCGCACGAACAAAAAAACCACCAGACACTACTTTTCAATAGCAGCAGGACCCGCAATACCGTGGATTGGCGGCGACTGT
TTCTTCATCGAGGTGTTGAC

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MPRKAHTESLADSHAAPGGAAAVDRALTLLCAFQQGDTALSLAELASRTQLYKSTALRLLASLEHARLIQKLEDGRYGLG
SEVARLNAIYAASFSLDRVVLPVMRALVAATRESAAYHVAQGDARLCLYRVDSPHPIRDHIKAGDVLPLDRGTGGRVLMA
FGPRRTTGLSAKDKNLHARIREQGYFSAMGDRLAGVAGISAPVFKADGSLAAALTLTMPTERYDERHVQKVLEAARKLSG
QV

Sequences:

>Translated_242_residues
MPRKAHTESLADSHAAPGGAAAVDRALTLLCAFQQGDTALSLAELASRTQLYKSTALRLLASLEHARLIQKLEDGRYGLG
SEVARLNAIYAASFSLDRVVLPVMRALVAATRESAAYHVAQGDARLCLYRVDSPHPIRDHIKAGDVLPLDRGTGGRVLMA
FGPRRTTGLSAKDKNLHARIREQGYFSAMGDRLAGVAGISAPVFKADGSLAAALTLTMPTERYDERHVQKVLEAARKLSG
QV
>Mature_241_residues
PRKAHTESLADSHAAPGGAAAVDRALTLLCAFQQGDTALSLAELASRTQLYKSTALRLLASLEHARLIQKLEDGRYGLGS
EVARLNAIYAASFSLDRVVLPVMRALVAATRESAAYHVAQGDARLCLYRVDSPHPIRDHIKAGDVLPLDRGTGGRVLMAF
GPRRTTGLSAKDKNLHARIREQGYFSAMGDRLAGVAGISAPVFKADGSLAAALTLTMPTERYDERHVQKVLEAARKLSGQ
V

Specific function: Transcriptional repressor of genes involved in pectinolysis and in pectinase secretion. Controls all the genes involved in pectin catabolism, including the pel genes encoding pectate lyases, kdgT which encodes the 2-keto-3-deoxygluconate transport system

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1788131, Length=254, Percent_Identity=25.5905511811024, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 25952; Mature: 25821

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRKAHTESLADSHAAPGGAAAVDRALTLLCAFQQGDTALSLAELASRTQLYKSTALRLL
CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
ASLEHARLIQKLEDGRYGLGSEVARLNAIYAASFSLDRVVLPVMRALVAATRESAAYHVA
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCEEEEE
QGDARLCLYRVDSPHPIRDHIKAGDVLPLDRGTGGRVLMAFGPRRTTGLSAKDKNLHARI
CCCCEEEEEECCCCCCHHHHHCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHH
REQGYFSAMGDRLAGVAGISAPVFKADGSLAAALTLTMPTERYDERHVQKVLEAARKLSG
HHCCHHHHHHHHHHHHHCCCCCEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCC
QV
CC
>Mature Secondary Structure 
PRKAHTESLADSHAAPGGAAAVDRALTLLCAFQQGDTALSLAELASRTQLYKSTALRLL
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
ASLEHARLIQKLEDGRYGLGSEVARLNAIYAASFSLDRVVLPVMRALVAATRESAAYHVA
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCEEEEE
QGDARLCLYRVDSPHPIRDHIKAGDVLPLDRGTGGRVLMAFGPRRTTGLSAKDKNLHARI
CCCCEEEEEECCCCCCHHHHHCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHH
REQGYFSAMGDRLAGVAGISAPVFKADGSLAAALTLTMPTERYDERHVQKVLEAARKLSG
HHCCHHHHHHHHHHHHHCCCCCEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCC
QV
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1840643; 1545709 [H]