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The map label for this gene is ybdK [C]

Identifier: 91790303

GI number: 91790303

Start: 4726427

End: 4727566

Strand: Direct

Name: ybdK [C]

Synonym: Bpro_4470

Alternate gene names: 91790303

Gene position: 4726427-4727566 (Clockwise)

Preceding gene: 91790302

Following gene: 91790304

Centisome position: 90.89

GC content: 63.42

Gene sequence:

>1140_bases
ATGAGCCTTGAAGTCTTCCATAAATCCGCCGCCCTGTCGCTCGGCGTGGAGCTTGAGCTGCAGCTCGTGAACACCCACGA
CTACGACCTGGCCCCCTATGCCGAAGACATGCTGCGCCTGATGCACAAGATCCCGCTACCTGGCAGCGTGGTGCCCGAGA
TGACCTCGAGCATGATTGAAATCTCCACCGGGGTCTGCAGTTCGTCGTCGGAAGTCCTGGGCCAGTTGTCGCAGATTCGC
GATGCCCTCGTGAAGAGCGCCGACAAGCTCAATATCGCCGTGGTCGGCGGCGGCACGCACCCGTTCCAGCAGTGGCATGA
GCGCCGCATTTACGACAAGCCACGTTTTCGCGAGTTGTCCGAGCTCTATGGCTACCTCTCCAAGCAGTTCACGATTTTCG
GCCAGCATGTGCATGTGGGCTGCCCCAATGCAGACAGCGCGCTGCTCACGCTGCACCGCATGTCACGCTACATCCCCCAT
TTCATCGCGCTGTCGGCCTCGTCACCCTATGTGCAGGGCCAGGACACGGCGTTTGACTCGGCACGGCTCAATTCGGTGTT
TGCCTTTCCGCTGTCGGGCCGCGCCCCGTTTGCGCTCACCTGGGACGACTTCAAGGTTTACTTCGACAAGATGACACGCA
CCGGCGTGGTCAAGAGCATGAAGGACTTTTACTGGGACATCCGTCCCAAGCCGGAATTCGGCACCATCGAGATCCGGGTG
TTCGACACACCGCTCACGGTGGAGCGTGCCACCGCGCTGGCGGGCTTCGTGCAGTCGCTGGCCTCGTGGTTCATGAACGA
GCAGCCCTTCATGCCGACGGAAGACGACTACCTGGTCTACACCTACAACCGCTTCCAGGCCTGCCGCTTCGGTCTGGACG
CCGTCTATGTGGACCCGGCCACCGGCGGCCACATGCCGCTGCGCGAACACATCCTGATGACCATGGAGCGGATTGCTCGC
CATGCCGGCGCGGTGGGCGCCGGCGCTTCGCTGCACCTGCTGCAGACCAGCGTGGAGCGGAGCGACAACGACGCCCGCTG
GCTGCGCGAGAAGCAGGGCGAGGAGCGCCTGCTGGCCGAGGTCATCCGGCAGGCCGCCCAGCGCTTTCGCGGCGGCGTGA
CGCATACCCAGCTGCCCTGA

Upstream 100 bases:

>100_bases
GTGTTCGGTGCCATTTTGGCCACGGTGTCCATCTACCGCGCCGGGGAAAGTTCAACCCCCTGGCCGCCGCTTCGGCGCAG
CCCCCCTGCAGGAGTCCAGC

Downstream 100 bases:

>100_bases
CCAGGCTGGCGTACTGCCTGTATGCTTGGCCCCATGGGTGAGTTTGATCTGATTGCACGCTACTTCACACGACCTGCACG
CCGCGCCGTGCTTGGCGTGG

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MSLEVFHKSAALSLGVELELQLVNTHDYDLAPYAEDMLRLMHKIPLPGSVVPEMTSSMIEISTGVCSSSSEVLGQLSQIR
DALVKSADKLNIAVVGGGTHPFQQWHERRIYDKPRFRELSELYGYLSKQFTIFGQHVHVGCPNADSALLTLHRMSRYIPH
FIALSASSPYVQGQDTAFDSARLNSVFAFPLSGRAPFALTWDDFKVYFDKMTRTGVVKSMKDFYWDIRPKPEFGTIEIRV
FDTPLTVERATALAGFVQSLASWFMNEQPFMPTEDDYLVYTYNRFQACRFGLDAVYVDPATGGHMPLREHILMTMERIAR
HAGAVGAGASLHLLQTSVERSDNDARWLREKQGEERLLAEVIRQAAQRFRGGVTHTQLP

Sequences:

>Translated_379_residues
MSLEVFHKSAALSLGVELELQLVNTHDYDLAPYAEDMLRLMHKIPLPGSVVPEMTSSMIEISTGVCSSSSEVLGQLSQIR
DALVKSADKLNIAVVGGGTHPFQQWHERRIYDKPRFRELSELYGYLSKQFTIFGQHVHVGCPNADSALLTLHRMSRYIPH
FIALSASSPYVQGQDTAFDSARLNSVFAFPLSGRAPFALTWDDFKVYFDKMTRTGVVKSMKDFYWDIRPKPEFGTIEIRV
FDTPLTVERATALAGFVQSLASWFMNEQPFMPTEDDYLVYTYNRFQACRFGLDAVYVDPATGGHMPLREHILMTMERIAR
HAGAVGAGASLHLLQTSVERSDNDARWLREKQGEERLLAEVIRQAAQRFRGGVTHTQLP
>Mature_378_residues
SLEVFHKSAALSLGVELELQLVNTHDYDLAPYAEDMLRLMHKIPLPGSVVPEMTSSMIEISTGVCSSSSEVLGQLSQIRD
ALVKSADKLNIAVVGGGTHPFQQWHERRIYDKPRFRELSELYGYLSKQFTIFGQHVHVGCPNADSALLTLHRMSRYIPHF
IALSASSPYVQGQDTAFDSARLNSVFAFPLSGRAPFALTWDDFKVYFDKMTRTGVVKSMKDFYWDIRPKPEFGTIEIRVF
DTPLTVERATALAGFVQSLASWFMNEQPFMPTEDDYLVYTYNRFQACRFGLDAVYVDPATGGHMPLREHILMTMERIARH
AGAVGAGASLHLLQTSVERSDNDARWLREKQGEERLLAEVIRQAAQRFRGGVTHTQLP

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=371, Percent_Identity=41.5094339622642, Blast_Score=328, Evalue=3e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_POLSJ (Q123D5)

Other databases:

- EMBL:   CP000316
- RefSeq:   YP_551255.1
- ProteinModelPortal:   Q123D5
- SMR:   Q123D5
- STRING:   Q123D5
- GeneID:   4012862
- GenomeReviews:   CP000316_GR
- KEGG:   pol:Bpro_4470
- NMPDR:   fig|296591.1.peg.1072
- eggNOG:   COG2170
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- PhylomeDB:   Q123D5
- ProtClustDB:   PRK13516
- BioCyc:   PSP296591:BPRO_4470-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 42741; Mature: 42610

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLEVFHKSAALSLGVELELQLVNTHDYDLAPYAEDMLRLMHKIPLPGSVVPEMTSSMIE
CCHHHHHHHHHEEECEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
ISTGVCSSSSEVLGQLSQIRDALVKSADKLNIAVVGGGTHPFQQWHERRIYDKPRFRELS
HHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCHHHHHH
ELYGYLSKQFTIFGQHVHVGCPNADSALLTLHRMSRYIPHFIALSASSPYVQGQDTAFDS
HHHHHHHHHEEEEECEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCH
ARLNSVFAFPLSGRAPFALTWDDFKVYFDKMTRTGVVKSMKDFYWDIRPKPEFGTIEIRV
HHCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
FDTPLTVERATALAGFVQSLASWFMNEQPFMPTEDDYLVYTYNRFQACRFGLDAVYVDPA
ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHCCCEEEECCC
TGGHMPLREHILMTMERIARHAGAVGAGASLHLLQTSVERSDNDARWLREKQGEERLLAE
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHH
VIRQAAQRFRGGVTHTQLP
HHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SLEVFHKSAALSLGVELELQLVNTHDYDLAPYAEDMLRLMHKIPLPGSVVPEMTSSMIE
CHHHHHHHHHEEECEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
ISTGVCSSSSEVLGQLSQIRDALVKSADKLNIAVVGGGTHPFQQWHERRIYDKPRFRELS
HHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCHHHHHH
ELYGYLSKQFTIFGQHVHVGCPNADSALLTLHRMSRYIPHFIALSASSPYVQGQDTAFDS
HHHHHHHHHEEEEECEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCH
ARLNSVFAFPLSGRAPFALTWDDFKVYFDKMTRTGVVKSMKDFYWDIRPKPEFGTIEIRV
HHCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
FDTPLTVERATALAGFVQSLASWFMNEQPFMPTEDDYLVYTYNRFQACRFGLDAVYVDPA
ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHCCCEEEECCC
TGGHMPLREHILMTMERIARHAGAVGAGASLHLLQTSVERSDNDARWLREKQGEERLLAE
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHH
VIRQAAQRFRGGVTHTQLP
HHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA