| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91790263
Identifier: 91790263
GI number: 91790263
Start: 4675106
End: 4677736
Strand: Direct
Name: 91790263
Synonym: Bpro_4430
Alternate gene names: NA
Gene position: 4675106-4677736 (Clockwise)
Preceding gene: 91790259
Following gene: 91790264
Centisome position: 89.9
GC content: 52.72
Gene sequence:
>2631_bases ATGTTCAATGATCAAGCCCTGCGGCAGTATTTTGAGGCGAGGGCTCTTGGAACAACTGCACGCAATGTCATTCTCAAGAT TAGAGAGAGCGATCCCGTTCGGAATGTGAGTAACCGGGCGGGGAACATGGCCGGCACTCATGCTAGTTCCAAAATGCAGC GCACGATCCAATGGGAATCATGGTCGGGCGAGCGAGCGTTGGCGGTACTCTGGGAATTTGATCCCGATGCCTTAGAGTTT TGGGATCAAACGTACGATCTCAAAATTACTTATACGCTCCCTACAGGGCGAAGGACAGGCCTTCGAACGGTGCCGGATTA CCTGCTTCTAGCAAAAAATTTCTGCGGGTTCGTTGACTTCAAAACCTCAGCAGAGTTGCGAGAACTGGCAGTCGATCAGC CAACGCGCTACGTGCAGATTGCCGATGGCAAGTGGGATCAACCGCCGGCACGAGAGGCAAGTCAAAGCTTAGGCCTTGAC TACCAACTTCTCTCCGATCTGGACATACCGCACGTGTTGGTGCGAAACCTTGAATTCTTGCGTCCTCGCATGCTGCATGG ACTAAGCACGCCGGAGACATCAATCGATGCATTGAAACAGTCACTTATCGAGCAAAAGAAGATCGTTCTTTCCGAGGCCA TCAACATGGTCGGTGACCCCAATATCATTTACTGGGGGCATTTCTGGAGTCATTGGTTTCTTAGCCTCAATACCGAGCCT CTTGCACATCCAGATTCATCCTGCGTCTATCTCGATAAGTTGGCGAGAGATACGTTCGGTGCAGTCGAACGCTGCTATCA ACCGCTGCTATCCACCACACTAGATGCCGACTCGATTCCTGATCGAGCTTTTATCCGCTGGGACAACAGCCTCTTTCAAC TGCTGAATCGCAGCACGACCCATGTCTATCTGCAACCCGGAAATGGTCCACTGGTAACTATTCTCAGGCGTGACTTTGCC GGATTGGTTTCCTCTAACGCAATTACCGCGAATGTTCCTGCGCGCCTACTAATCGCCTCCGGACTGGACATTCTGAAGTC CTCGACGTCGAGTTCTCAAATGCGCGCTTTGGAAAAGTTAAAAATTCTTGAGCGCCATTGGAGTGGTGAACAGGTCATTG GAGATGTTGTCGCAGAGCGAACACTGCGAGACTGGGTCGCGTGCTTTCGAGGGGCAGAAGAAGAATACGGCAACGGGTTT CTTGGCCTCATCAACAAGAACCACCTGAAAGGCAACCGCACCGCACGCACTAGCAAAGAGGAGCTTGCGCTTGTTGAGGA GGCATTCGAATGGCTCAAAGTGGAAGTAGCGCGCCCACCTGCGGCCGGATATGCAGTCTATGTCGCATCTTGCCATGAGG CAGCAATTATTCCTCGATCAGAGAATTCTTTCATGAAGCTGTGGGGGAAAAATGATAAGTATGAGGAAACCCTGACCCGG GAAGGCAAGCGAGCCGCTTACCCACATAAGGCACCTCACCACAAAAATCCACAGTCGATATTACAAGGCCCCCCCGAAGG CGACAGTCCATTCAATCAAGTGCACGTCGACCATACCCAGTTAGATTTTTTTTGCCGACGGGAAAATTCTTCTGCGCTGC TGGGAAAACCCTGGTTGAGTCTTGCCATCGATGCGTGCACCCGGTTAGTGCTTGGGTGGTGGCTGTCCATGTTGGCCCCC AGCACAGCATCCGTTCTGATGGTGCTTCGAGACATGGTGAGGCGTCATGGAAAGCTTCCGCTTTACACCATCACCGACAG CGGCAAAGATTTCTCCGCCACTCGCGTGAAGCAGTTTCTCGCCAGCCACCGCTGCGGACATGGCTTCCGACCAGCTGGGG AACCACGCTTTGGCAATCCGGTGGAACGGCTGAATCTCGACATCTCTATGCATTTTTCTCAAGTCGTGTATGGGAGCAAC AAAATATTTAAAACGCCCCGGATGAGCTCGGCAACGCACGACCCCAGAAATCTTGCCTACCTTACGATGGGTTCGAGCGC GAGCAAGCTTGAGGAGCTCTTCTTCGACCTGTATCCACAGCGGCCGCACTCCGGTTTGGGCGAGTCTCCGGATAGCAAAC TGCGATCCGCAGCCATCATGCAAGGAACTTCATGGGGAGTACCAACCCGTTTTGACGACCGTCTTCTTTTTCAAACGCTT GCAACACCGCACAAGCATGGCGGTTTGGTAAGGCAGCGCGACGGCATTCGCTTAAACGGGCACAACTATTTCTCGCCATT GCTGGTTGGCGGCGGCAATGGGAGGCATATGCGAGAGCTACCTCTCTACGATCCTGAAGATCCTACCTACATCCAGGCGC GTGTAGATTCGCAATGGACAAGATGCGATTTGCTTGACTCACAGAGAAAGCGCTTGCCCTCGTCCGACCTTAAATACTAT TTGTCGGAAAAGATTTTCCTCAATCGACACAGCACAAATAAGGACGACATCAGAGCGTACCAGGCAAGCCTGGGGAGTTT TTATAAACGCACTGACGAAGACCGAGATCGAGACGCCATTGACAGTCTCGACGCGAGTCCTGCGGATCCTCCTGTGCAGC CTGATACTCCAGCACTCCCTTTTCCGCCCATTCAGGCAGCCCCCGTTTCCAAGAGGCCGCGTCATGAATAG
Upstream 100 bases:
>100_bases ATCCTCATCTCGGTGAGAGGCGACAGCGTGCATCCGAAGATTAACGGGGCCAGATCATGCGTCATGGTCGAGCACAGGCA CCAATCAATACGTCCCCGCC
Downstream 100 bases:
>100_bases TTCCACGATTGCACGCTTGGTCAAGCATGGGGAAAATTCTGATCCTCGAGTCGTCCAGTTTCGGGAGTATTTCATACTAC ATGAGCGCTTCCAGAACATC
Product: hypothetical protein
Products: NA
Alternate protein names: Integrase Catalytic Subunit; Transposase; TniA Transposase; TnsA Endonuclease; Integrase Core Domain Protein; Transposition Protein B; TniA-Like Transposition Protein; Transposase-Like Mu; Transposase For Transposon; Transposase TniA For Transposition Module Tni
Number of amino acids: Translated: 876; Mature: 876
Protein sequence:
>876_residues MFNDQALRQYFEARALGTTARNVILKIRESDPVRNVSNRAGNMAGTHASSKMQRTIQWESWSGERALAVLWEFDPDALEF WDQTYDLKITYTLPTGRRTGLRTVPDYLLLAKNFCGFVDFKTSAELRELAVDQPTRYVQIADGKWDQPPAREASQSLGLD YQLLSDLDIPHVLVRNLEFLRPRMLHGLSTPETSIDALKQSLIEQKKIVLSEAINMVGDPNIIYWGHFWSHWFLSLNTEP LAHPDSSCVYLDKLARDTFGAVERCYQPLLSTTLDADSIPDRAFIRWDNSLFQLLNRSTTHVYLQPGNGPLVTILRRDFA GLVSSNAITANVPARLLIASGLDILKSSTSSSQMRALEKLKILERHWSGEQVIGDVVAERTLRDWVACFRGAEEEYGNGF LGLINKNHLKGNRTARTSKEELALVEEAFEWLKVEVARPPAAGYAVYVASCHEAAIIPRSENSFMKLWGKNDKYEETLTR EGKRAAYPHKAPHHKNPQSILQGPPEGDSPFNQVHVDHTQLDFFCRRENSSALLGKPWLSLAIDACTRLVLGWWLSMLAP STASVLMVLRDMVRRHGKLPLYTITDSGKDFSATRVKQFLASHRCGHGFRPAGEPRFGNPVERLNLDISMHFSQVVYGSN KIFKTPRMSSATHDPRNLAYLTMGSSASKLEELFFDLYPQRPHSGLGESPDSKLRSAAIMQGTSWGVPTRFDDRLLFQTL ATPHKHGGLVRQRDGIRLNGHNYFSPLLVGGGNGRHMRELPLYDPEDPTYIQARVDSQWTRCDLLDSQRKRLPSSDLKYY LSEKIFLNRHSTNKDDIRAYQASLGSFYKRTDEDRDRDAIDSLDASPADPPVQPDTPALPFPPIQAAPVSKRPRHE
Sequences:
>Translated_876_residues MFNDQALRQYFEARALGTTARNVILKIRESDPVRNVSNRAGNMAGTHASSKMQRTIQWESWSGERALAVLWEFDPDALEF WDQTYDLKITYTLPTGRRTGLRTVPDYLLLAKNFCGFVDFKTSAELRELAVDQPTRYVQIADGKWDQPPAREASQSLGLD YQLLSDLDIPHVLVRNLEFLRPRMLHGLSTPETSIDALKQSLIEQKKIVLSEAINMVGDPNIIYWGHFWSHWFLSLNTEP LAHPDSSCVYLDKLARDTFGAVERCYQPLLSTTLDADSIPDRAFIRWDNSLFQLLNRSTTHVYLQPGNGPLVTILRRDFA GLVSSNAITANVPARLLIASGLDILKSSTSSSQMRALEKLKILERHWSGEQVIGDVVAERTLRDWVACFRGAEEEYGNGF LGLINKNHLKGNRTARTSKEELALVEEAFEWLKVEVARPPAAGYAVYVASCHEAAIIPRSENSFMKLWGKNDKYEETLTR EGKRAAYPHKAPHHKNPQSILQGPPEGDSPFNQVHVDHTQLDFFCRRENSSALLGKPWLSLAIDACTRLVLGWWLSMLAP STASVLMVLRDMVRRHGKLPLYTITDSGKDFSATRVKQFLASHRCGHGFRPAGEPRFGNPVERLNLDISMHFSQVVYGSN KIFKTPRMSSATHDPRNLAYLTMGSSASKLEELFFDLYPQRPHSGLGESPDSKLRSAAIMQGTSWGVPTRFDDRLLFQTL ATPHKHGGLVRQRDGIRLNGHNYFSPLLVGGGNGRHMRELPLYDPEDPTYIQARVDSQWTRCDLLDSQRKRLPSSDLKYY LSEKIFLNRHSTNKDDIRAYQASLGSFYKRTDEDRDRDAIDSLDASPADPPVQPDTPALPFPPIQAAPVSKRPRHE >Mature_876_residues MFNDQALRQYFEARALGTTARNVILKIRESDPVRNVSNRAGNMAGTHASSKMQRTIQWESWSGERALAVLWEFDPDALEF WDQTYDLKITYTLPTGRRTGLRTVPDYLLLAKNFCGFVDFKTSAELRELAVDQPTRYVQIADGKWDQPPAREASQSLGLD YQLLSDLDIPHVLVRNLEFLRPRMLHGLSTPETSIDALKQSLIEQKKIVLSEAINMVGDPNIIYWGHFWSHWFLSLNTEP LAHPDSSCVYLDKLARDTFGAVERCYQPLLSTTLDADSIPDRAFIRWDNSLFQLLNRSTTHVYLQPGNGPLVTILRRDFA GLVSSNAITANVPARLLIASGLDILKSSTSSSQMRALEKLKILERHWSGEQVIGDVVAERTLRDWVACFRGAEEEYGNGF LGLINKNHLKGNRTARTSKEELALVEEAFEWLKVEVARPPAAGYAVYVASCHEAAIIPRSENSFMKLWGKNDKYEETLTR EGKRAAYPHKAPHHKNPQSILQGPPEGDSPFNQVHVDHTQLDFFCRRENSSALLGKPWLSLAIDACTRLVLGWWLSMLAP STASVLMVLRDMVRRHGKLPLYTITDSGKDFSATRVKQFLASHRCGHGFRPAGEPRFGNPVERLNLDISMHFSQVVYGSN KIFKTPRMSSATHDPRNLAYLTMGSSASKLEELFFDLYPQRPHSGLGESPDSKLRSAAIMQGTSWGVPTRFDDRLLFQTL ATPHKHGGLVRQRDGIRLNGHNYFSPLLVGGGNGRHMRELPLYDPEDPTYIQARVDSQWTRCDLLDSQRKRLPSSDLKYY LSEKIFLNRHSTNKDDIRAYQASLGSFYKRTDEDRDRDAIDSLDASPADPPVQPDTPALPFPPIQAAPVSKRPRHE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 99004; Mature: 99004
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: PS50994 INTEGRASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFNDQALRQYFEARALGTTARNVILKIRESDPVRNVSNRAGNMAGTHASSKMQRTIQWES CCCHHHHHHHHHHHHHCHHHCEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHEEECC WSGERALAVLWEFDPDALEFWDQTYDLKITYTLPTGRRTGLRTVPDYLLLAKNFCGFVDF CCCCEEEEEEEECCCHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEC KTSAELRELAVDQPTRYVQIADGKWDQPPAREASQSLGLDYQLLSDLDIPHVLVRNLEFL CCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHH RPRMLHGLSTPETSIDALKQSLIEQKKIVLSEAINMVGDPNIIYWGHFWSHWFLSLNTEP HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCC LAHPDSSCVYLDKLARDTFGAVERCYQPLLSTTLDADSIPDRAFIRWDNSLFQLLNRSTT CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHCCCCC HVYLQPGNGPLVTILRRDFAGLVSSNAITANVPARLLIASGLDILKSSTSSSQMRALEKL EEEEECCCCCEEEHHHHHHHHHHCCCCEEECCCHHHHHHCCHHHHHCCCCHHHHHHHHHH KILERHWSGEQVIGDVVAERTLRDWVACFRGAEEEYGNGFLGLINKNHLKGNRTARTSKE HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEECCCCCCCCCCCCCHH ELALVEEAFEWLKVEVARPPAAGYAVYVASCHEAAIIPRSENSFMKLWGKNDKYEETLTR HHHHHHHHHHHHEEEECCCCCCCEEEEEEECCCEEEEECCCCCCEEECCCCCCHHHHHHC EGKRAAYPHKAPHHKNPQSILQGPPEGDSPFNQVHVDHTQLDFFCRRENSSALLGKPWLS CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCHHHEEEEEECCCCCCEECCHHHH LAIDACTRLVLGWWLSMLAPSTASVLMVLRDMVRRHGKLPLYTITDSGKDFSATRVKQFL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH ASHRCGHGFRPAGEPRFGNPVERLNLDISMHFSQVVYGSNKIFKTPRMSSATHDPRNLAY HHHCCCCCCCCCCCCCCCCHHHHHEEEEEEEHHHHHCCCCCEEECCCCCCCCCCCCCEEE LTMGSSASKLEELFFDLYPQRPHSGLGESPDSKLRSAAIMQGTSWGVPTRFDDRLLFQTL EEECCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH ATPHKHGGLVRQRDGIRLNGHNYFSPLLVGGGNGRHMRELPLYDPEDPTYIQARVDSQWT CCCCCCCCCEEECCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCH RCDLLDSQRKRLPSSDLKYYLSEKIFLNRHSTNKDDIRAYQASLGSFYKRTDEDRDRDAI HHHHHHHHHHCCCHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH DSLDASPADPPVQPDTPALPFPPIQAAPVSKRPRHE HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MFNDQALRQYFEARALGTTARNVILKIRESDPVRNVSNRAGNMAGTHASSKMQRTIQWES CCCHHHHHHHHHHHHHCHHHCEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHEEECC WSGERALAVLWEFDPDALEFWDQTYDLKITYTLPTGRRTGLRTVPDYLLLAKNFCGFVDF CCCCEEEEEEEECCCHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEC KTSAELRELAVDQPTRYVQIADGKWDQPPAREASQSLGLDYQLLSDLDIPHVLVRNLEFL CCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHH RPRMLHGLSTPETSIDALKQSLIEQKKIVLSEAINMVGDPNIIYWGHFWSHWFLSLNTEP HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCC LAHPDSSCVYLDKLARDTFGAVERCYQPLLSTTLDADSIPDRAFIRWDNSLFQLLNRSTT CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHCCCCC HVYLQPGNGPLVTILRRDFAGLVSSNAITANVPARLLIASGLDILKSSTSSSQMRALEKL EEEEECCCCCEEEHHHHHHHHHHCCCCEEECCCHHHHHHCCHHHHHCCCCHHHHHHHHHH KILERHWSGEQVIGDVVAERTLRDWVACFRGAEEEYGNGFLGLINKNHLKGNRTARTSKE HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEECCCCCCCCCCCCCHH ELALVEEAFEWLKVEVARPPAAGYAVYVASCHEAAIIPRSENSFMKLWGKNDKYEETLTR HHHHHHHHHHHHEEEECCCCCCCEEEEEEECCCEEEEECCCCCCEEECCCCCCHHHHHHC EGKRAAYPHKAPHHKNPQSILQGPPEGDSPFNQVHVDHTQLDFFCRRENSSALLGKPWLS CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCHHHEEEEEECCCCCCEECCHHHH LAIDACTRLVLGWWLSMLAPSTASVLMVLRDMVRRHGKLPLYTITDSGKDFSATRVKQFL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH ASHRCGHGFRPAGEPRFGNPVERLNLDISMHFSQVVYGSNKIFKTPRMSSATHDPRNLAY HHHCCCCCCCCCCCCCCCCHHHHHEEEEEEEHHHHHCCCCCEEECCCCCCCCCCCCCEEE LTMGSSASKLEELFFDLYPQRPHSGLGESPDSKLRSAAIMQGTSWGVPTRFDDRLLFQTL EEECCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH ATPHKHGGLVRQRDGIRLNGHNYFSPLLVGGGNGRHMRELPLYDPEDPTYIQARVDSQWT CCCCCCCCCEEECCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCH RCDLLDSQRKRLPSSDLKYYLSEKIFLNRHSTNKDDIRAYQASLGSFYKRTDEDRDRDAI HHHHHHHHHHCCCHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH DSLDASPADPPVQPDTPALPFPPIQAAPVSKRPRHE HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA