The gene/protein map for NC_007948 is currently unavailable.
Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is oppD [C]

Identifier: 91790235

GI number: 91790235

Start: 4645338

End: 4646342

Strand: Reverse

Name: oppD [C]

Synonym: Bpro_4402

Alternate gene names: 91790235

Gene position: 4646342-4645338 (Counterclockwise)

Preceding gene: 91790236

Following gene: 91790234

Centisome position: 89.35

GC content: 60.2

Gene sequence:

>1005_bases
ATGTTGCTCGAAGCCCGCAATCTGCGAGTGACTTATCGGAGCGCCCACGGAGATGTGCGCGCCGTCGACGGACTCGATCT
GGCAATCAACGAATCTGAAGTCTTTGGTCTGGTCGGCGAGTCCGGTTGCGGAAAATCGACGGTCGTCAAGGCTTTGTTGC
GGCTGCTGCCGCCAACCGCCCGGATCGAGGCGGATGTGCTGCGCTTCCGGGAGCACGACTTGCTCACGATGGCGCCGGCA
CGCTTTCGGCGCGAGATTCTGATGCGCGAGATCGCGTTGGTGCCGCAGAGCGCGCAGAACTCGCTCAACCCGGTGCAGCG
CGTGGGAGCACAGATTGTTGAGGCAATCCGCGCTCACTCGAAAGCGTCCGCGGGCAAGGCCCGCGAACGTGTCGCCGAAC
TTTTCGACATCGTCGGCCTTCAGTCGGAGCTGATGGACCGGTTCCCACACCAGTTCTCGGGCGGCATGCGCCAACGCGCG
ATGATCGCGATGGCCTTAGCCTTCGAGCCCGCGCTGCTGGTGATGGACGAGCCGACCACTGGTTTGGATGTGCTGGTTCA
GGAAAGGCTTCTGGGCCGCATCCGGGAAATCCGCCAACGGATCAAGTCGTCGATTCTGCTGATCACGCACGACATCGGAG
TGATTGCTGAAACGGCAGATCGGGTCGGTGTAATGTATTCCGGACGAATGGTCGAAAGTGCGCCGACTACGGCGCTGTTC
GCTGCTTCTCAGCATCCATACACCCTTGGCCTCAAGAATGCGTTCCCCAGCATTCTTGAATTGGGGCGCGAGCTAATTTC
CATACCCGGGTCGCCACCAGACTTGTCGGACCCTCCCAAAGGATGTGGCTTTGGCGAGCGGTGTCCGTTCGCGCTTGAGA
CTTGTCATGCGCGGCGGCCAGCCCTCATCAAAGTCGGACCCGATCACATTTCAGCCTGCATACGTACGGCTGATATCGAA
TATATGCGCGCCGCCGCAGCGAAGAAGTTGACATGGCACTCTTAA

Upstream 100 bases:

>100_bases
ATCGCGCCATCGGGAGCGATCGTGTTGCTCGTCAGCGCCTTCGTGTTCGTGAGCCGCGCTTACGAAGTTGTCGCTAACCC
ACGATTGGGGGACCGCTAAC

Downstream 100 bases:

>100_bases
GCGTAGAACACCTAACAAAGCACTTCAGTCTCGGACGCGATCTCGGCGCCGTGCTGCGTCGGCAACCGTCCAACTGGATT
AAACCGGTCGAAGACGTGAG

Product: oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MLLEARNLRVTYRSAHGDVRAVDGLDLAINESEVFGLVGESGCGKSTVVKALLRLLPPTARIEADVLRFREHDLLTMAPA
RFRREILMREIALVPQSAQNSLNPVQRVGAQIVEAIRAHSKASAGKARERVAELFDIVGLQSELMDRFPHQFSGGMRQRA
MIAMALAFEPALLVMDEPTTGLDVLVQERLLGRIREIRQRIKSSILLITHDIGVIAETADRVGVMYSGRMVESAPTTALF
AASQHPYTLGLKNAFPSILELGRELISIPGSPPDLSDPPKGCGFGERCPFALETCHARRPALIKVGPDHISACIRTADIE
YMRAAAAKKLTWHS

Sequences:

>Translated_334_residues
MLLEARNLRVTYRSAHGDVRAVDGLDLAINESEVFGLVGESGCGKSTVVKALLRLLPPTARIEADVLRFREHDLLTMAPA
RFRREILMREIALVPQSAQNSLNPVQRVGAQIVEAIRAHSKASAGKARERVAELFDIVGLQSELMDRFPHQFSGGMRQRA
MIAMALAFEPALLVMDEPTTGLDVLVQERLLGRIREIRQRIKSSILLITHDIGVIAETADRVGVMYSGRMVESAPTTALF
AASQHPYTLGLKNAFPSILELGRELISIPGSPPDLSDPPKGCGFGERCPFALETCHARRPALIKVGPDHISACIRTADIE
YMRAAAAKKLTWHS
>Mature_334_residues
MLLEARNLRVTYRSAHGDVRAVDGLDLAINESEVFGLVGESGCGKSTVVKALLRLLPPTARIEADVLRFREHDLLTMAPA
RFRREILMREIALVPQSAQNSLNPVQRVGAQIVEAIRAHSKASAGKARERVAELFDIVGLQSELMDRFPHQFSGGMRQRA
MIAMALAFEPALLVMDEPTTGLDVLVQERLLGRIREIRQRIKSSILLITHDIGVIAETADRVGVMYSGRMVESAPTTALF
AASQHPYTLGLKNAFPSILELGRELISIPGSPPDLSDPPKGCGFGERCPFALETCHARRPALIKVGPDHISACIRTADIE
YMRAAAAKKLTWHS

Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42741659, Length=195, Percent_Identity=32.3076923076923, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI6005701, Length=210, Percent_Identity=27.6190476190476, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI171184400, Length=245, Percent_Identity=30.2040816326531, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI27436953, Length=212, Percent_Identity=24.0566037735849, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI48994883, Length=326, Percent_Identity=39.5705521472393, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1789963, Length=314, Percent_Identity=39.171974522293, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI1787548, Length=322, Percent_Identity=35.4037267080745, Blast_Score=199, Evalue=1e-52,
Organism=Escherichia coli, GI1787759, Length=319, Percent_Identity=36.0501567398119, Blast_Score=199, Evalue=3e-52,
Organism=Escherichia coli, GI1787500, Length=315, Percent_Identity=36.5079365079365, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI145693107, Length=264, Percent_Identity=40.1515151515151, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1789962, Length=322, Percent_Identity=34.7826086956522, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1787758, Length=291, Percent_Identity=35.0515463917526, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=39.2307692307692, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI48994997, Length=248, Percent_Identity=35.0806451612903, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1789890, Length=249, Percent_Identity=35.7429718875502, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI87081791, Length=265, Percent_Identity=32.4528301886792, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787547, Length=255, Percent_Identity=29.0196078431373, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1789891, Length=222, Percent_Identity=29.7297297297297, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787712, Length=247, Percent_Identity=29.5546558704453, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788450, Length=226, Percent_Identity=31.4159292035398, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786398, Length=247, Percent_Identity=27.9352226720648, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788225, Length=247, Percent_Identity=30.7692307692308, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1789032, Length=223, Percent_Identity=30.4932735426009, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790162, Length=249, Percent_Identity=28.1124497991968, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786319, Length=249, Percent_Identity=27.710843373494, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI87081709, Length=264, Percent_Identity=28.4090909090909, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787370, Length=227, Percent_Identity=29.0748898678414, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788761, Length=240, Percent_Identity=30, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790467, Length=229, Percent_Identity=28.3842794759825, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786345, Length=213, Percent_Identity=31.924882629108, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787089, Length=241, Percent_Identity=30.2904564315353, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786872, Length=205, Percent_Identity=31.219512195122, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=32.4074074074074, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI48994943, Length=236, Percent_Identity=28.8135593220339, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87082267, Length=222, Percent_Identity=29.2792792792793, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1786803, Length=226, Percent_Identity=28.3185840707965, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789672, Length=255, Percent_Identity=27.843137254902, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=26.6949152542373, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790739, Length=239, Percent_Identity=28.0334728033473, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787105, Length=241, Percent_Identity=29.4605809128631, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787029, Length=242, Percent_Identity=27.6859504132231, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788644, Length=127, Percent_Identity=32.2834645669291, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786253, Length=238, Percent_Identity=27.3109243697479, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786563, Length=229, Percent_Identity=26.2008733624454, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787112, Length=254, Percent_Identity=27.1653543307087, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081834, Length=233, Percent_Identity=26.6094420600858, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787792, Length=235, Percent_Identity=27.6595744680851, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=28.7081339712919, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789751, Length=238, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082268, Length=232, Percent_Identity=28.0172413793103, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789864, Length=226, Percent_Identity=26.9911504424779, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789593, Length=241, Percent_Identity=26.1410788381743, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790534, Length=204, Percent_Identity=31.3725490196078, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789991, Length=221, Percent_Identity=22.6244343891403, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=257, Percent_Identity=31.5175097276265, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI193208177, Length=247, Percent_Identity=27.9352226720648, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=287, Percent_Identity=26.1324041811847, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=241, Percent_Identity=26.9709543568465, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=219, Percent_Identity=29.6803652968037, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=240, Percent_Identity=29.5833333333333, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=236, Percent_Identity=28.3898305084746, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=186, Percent_Identity=29.5698924731183, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322980, Length=275, Percent_Identity=26.9090909090909, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321752, Length=246, Percent_Identity=26.8292682926829, Blast_Score=66, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6323959, Length=233, Percent_Identity=26.6094420600858, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI17136662, Length=219, Percent_Identity=32.4200913242009, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24659289, Length=256, Percent_Identity=27.734375, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281361582, Length=255, Percent_Identity=28.2352941176471, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24641342, Length=218, Percent_Identity=29.3577981651376, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI221460257, Length=235, Percent_Identity=30.6382978723404, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574150, Length=219, Percent_Identity=23.2876712328767, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007328, Length=219, Percent_Identity=23.2876712328767, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574259, Length=252, Percent_Identity=29.3650793650794, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161077321, Length=237, Percent_Identity=29.535864978903, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI45552437, Length=277, Percent_Identity=27.4368231046931, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24643674, Length=258, Percent_Identity=24.4186046511628, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24585557, Length=273, Percent_Identity=27.8388278388278, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 36641; Mature: 36641

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MLLEARNLRVTYRSAHGDVRAVDGLDLAINESEVFGLVGESGCGKSTVVKALLRLLPPTA
CCCCCCCCEEEEECCCCCEEEECCCEEEECCCHHEEEECCCCCCHHHHHHHHHHHCCCCH
RIEADVLRFREHDLLTMAPARFRREILMREIALVPQSAQNSLNPVQRVGAQIVEAIRAHS
HHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHH
KASAGKARERVAELFDIVGLQSELMDRFPHQFSGGMRQRAMIAMALAFEPALLVMDEPTT
HCCCHHHHHHHHHHHHHHCCHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCEEEEEECCCC
GLDVLVQERLLGRIREIRQRIKSSILLITHDIGVIAETADRVGVMYSGRMVESAPTTALF
HHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHCEEECCEEECCCCCCEEE
AASQHPYTLGLKNAFPSILELGRELISIPGSPPDLSDPPKGCGFGERCPFALETCHARRP
ECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
ALIKVGPDHISACIRTADIEYMRAAAAKKLTWHS
EEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLLEARNLRVTYRSAHGDVRAVDGLDLAINESEVFGLVGESGCGKSTVVKALLRLLPPTA
CCCCCCCCEEEEECCCCCEEEECCCEEEECCCHHEEEECCCCCCHHHHHHHHHHHCCCCH
RIEADVLRFREHDLLTMAPARFRREILMREIALVPQSAQNSLNPVQRVGAQIVEAIRAHS
HHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHH
KASAGKARERVAELFDIVGLQSELMDRFPHQFSGGMRQRAMIAMALAFEPALLVMDEPTT
HCCCHHHHHHHHHHHHHHCCHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCEEEEEECCCC
GLDVLVQERLLGRIREIRQRIKSSILLITHDIGVIAETADRVGVMYSGRMVESAPTTALF
HHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHCEEECCEEECCCCCCEEE
AASQHPYTLGLKNAFPSILELGRELISIPGSPPDLSDPPKGCGFGERCPFALETCHARRP
ECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
ALIKVGPDHISACIRTADIEYMRAAAAKKLTWHS
EEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424 [H]