Click here to switch to the map view.

The map label for this gene is soxB [H]

Identifier: 91790180

GI number: 91790180

Start: 4583587

End: 4584717

Strand: Reverse

Name: soxB [H]

Synonym: Bpro_4345

Alternate gene names: 91790180

Gene position: 4584717-4583587 (Counterclockwise)

Preceding gene: 91790181

Following gene: 91790179

Centisome position: 88.16

GC content: 64.19

Gene sequence:

>1131_bases
ATGAGTACGAAGGCTATCAACACCCTTGTTGTCGGCGGTGGCTTGCACGGACTGTCGGCCGCGCTGCATCTGGCCCGTGC
TGGCCGCCGCGTCGTGATTCTAGAACGGTCGTGGGTTGGCCGCCATGCCTCCGGCGCGACAGCGGCCGGGGTCCGCACAC
TCAACCGCCATCCGGCCGAGATTCCGATCTCGCTGGAATCCATGGACATGTGGCACAACATCGAGTCTATCGTTGCCGGT
GATTGTGGCTTTCATGCTCATGGTCAGATCAACGTTGCTGAATACCCGGATCATCTGCCTGCCCTGGAGACGCGTTTCGC
GATGATGCGGGACGCTGGGTACCGGCATGAGGAACTGGTCGATCGGGCAGAGTTGCTGAGGCTCGTTCCTGCGATCTCGC
CCCACTGCATGGCTGCGCTGATTGCCCGACGTGACGGCGCAGCTGATCCGCATCGGACCTTGCAGGCGTTCCGCCGCAGC
GCGGAGGCCGCGGGCGTTACGATCCACGAAGGTCTCGGCGTCACGGCGATCGAGCGGGCAGGCTCCGACTGGCGAGTCCG
TACCGACGCTCGGGATTTCGTGGTGCCGACCGTCGTCAATGCCGCCGGGGCCTGGGCGGGAAAGATCGCGGCCATGTTGG
GCGACGAAATCCCACTCGGCCATAAGGCCTCGATGATGGTCGTGACGGAGCGCATTGCGCCGCTCCTCAGGCCGGTCGTC
AGCGTCGTCGGGCGGCCGCTCTCCCTGAAGCAGTCCGACCAGGGAACCCTGGTAATCGGGGGAGGGCTTCAGGGCAGCGC
TGACATCGAAGCGCAGAAAAGTTTCGTCAATTTCACCGAACTCGCCAAAGGCGCGCGGGCGGCGACCGATCTCTTTCCCT
CCATCGGGCCAGTGCGAATCGTGCGTGCCTGGACGGGCATGGAGGCGAAAACAGATGACTATCTGCCCGTGATCGGCGCC
TCGCCGAACGCGAGCGGCGCCTATCACGCTTTCGGGTTCTCCGGCCACGGTTTCCAGCTCGTTCCGGTGGTTGGCGCCAT
CTTGGCCGACCTCATCGTCCGCGGTGGCACCAACAGACTGATAGAGGGTTTCTCTGCGGATCGGCTCATGCAACAGCGAG
CCGCCGCATGA

Upstream 100 bases:

>100_bases
CGCTCGGCGGCGATATACCTGCGGTTTCACTGGCTCTCAGGCCGTTGAAGCCCGTCGGCCTTGGCGCGCTTGCGGCGATC
GACACCGTGGATGCGGCCTC

Downstream 100 bases:

>100_bases
TACACGCCCTTATGCCCGAAACCACGACCTGCTAACGCATTGGGATTCAATCGGCAGTATCGATTCACGCCGCACACGCC
CAGATCGATTTTGCCTTCAA

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MSTKAINTLVVGGGLHGLSAALHLARAGRRVVILERSWVGRHASGATAAGVRTLNRHPAEIPISLESMDMWHNIESIVAG
DCGFHAHGQINVAEYPDHLPALETRFAMMRDAGYRHEELVDRAELLRLVPAISPHCMAALIARRDGAADPHRTLQAFRRS
AEAAGVTIHEGLGVTAIERAGSDWRVRTDARDFVVPTVVNAAGAWAGKIAAMLGDEIPLGHKASMMVVTERIAPLLRPVV
SVVGRPLSLKQSDQGTLVIGGGLQGSADIEAQKSFVNFTELAKGARAATDLFPSIGPVRIVRAWTGMEAKTDDYLPVIGA
SPNASGAYHAFGFSGHGFQLVPVVGAILADLIVRGGTNRLIEGFSADRLMQQRAAA

Sequences:

>Translated_376_residues
MSTKAINTLVVGGGLHGLSAALHLARAGRRVVILERSWVGRHASGATAAGVRTLNRHPAEIPISLESMDMWHNIESIVAG
DCGFHAHGQINVAEYPDHLPALETRFAMMRDAGYRHEELVDRAELLRLVPAISPHCMAALIARRDGAADPHRTLQAFRRS
AEAAGVTIHEGLGVTAIERAGSDWRVRTDARDFVVPTVVNAAGAWAGKIAAMLGDEIPLGHKASMMVVTERIAPLLRPVV
SVVGRPLSLKQSDQGTLVIGGGLQGSADIEAQKSFVNFTELAKGARAATDLFPSIGPVRIVRAWTGMEAKTDDYLPVIGA
SPNASGAYHAFGFSGHGFQLVPVVGAILADLIVRGGTNRLIEGFSADRLMQQRAAA
>Mature_375_residues
STKAINTLVVGGGLHGLSAALHLARAGRRVVILERSWVGRHASGATAAGVRTLNRHPAEIPISLESMDMWHNIESIVAGD
CGFHAHGQINVAEYPDHLPALETRFAMMRDAGYRHEELVDRAELLRLVPAISPHCMAALIARRDGAADPHRTLQAFRRSA
EAAGVTIHEGLGVTAIERAGSDWRVRTDARDFVVPTVVNAAGAWAGKIAAMLGDEIPLGHKASMMVVTERIAPLLRPVVS
VVGRPLSLKQSDQGTLVIGGGLQGSADIEAQKSFVNFTELAKGARAATDLFPSIGPVRIVRAWTGMEAKTDDYLPVIGAS
PNASGAYHAFGFSGHGFQLVPVVGAILADLIVRGGTNRLIEGFSADRLMQQRAAA

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI24797151, Length=377, Percent_Identity=26.790450928382, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI197927446, Length=384, Percent_Identity=25.5208333333333, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI21361378, Length=384, Percent_Identity=25.5208333333333, Blast_Score=82, Evalue=7e-16,
Organism=Escherichia coli, GI1787559, Length=385, Percent_Identity=26.4935064935065, Blast_Score=66, Evalue=3e-12,
Organism=Drosophila melanogaster, GI20130091, Length=386, Percent_Identity=25.3886010362694, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 39928; Mature: 39797

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKAINTLVVGGGLHGLSAALHLARAGRRVVILERSWVGRHASGATAAGVRTLNRHPAE
CCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCC
IPISLESMDMWHNIESIVAGDCGFHAHGQINVAEYPDHLPALETRFAMMRDAGYRHEELV
CCEEHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHH
DRAELLRLVPAISPHCMAALIARRDGAADPHRTLQAFRRSAEAAGVTIHEGLGVTAIERA
HHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHC
GSDWRVRTDARDFVVPTVVNAAGAWAGKIAAMLGDEIPLGHKASMMVVTERIAPLLRPVV
CCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
SVVGRPLSLKQSDQGTLVIGGGLQGSADIEAQKSFVNFTELAKGARAATDLFPSIGPVRI
HHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
VRAWTGMEAKTDDYLPVIGASPNASGAYHAFGFSGHGFQLVPVVGAILADLIVRGGTNRL
EEECCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHCCCCHHH
IEGFSADRLMQQRAAA
HHCCCHHHHHHHHCCC
>Mature Secondary Structure 
STKAINTLVVGGGLHGLSAALHLARAGRRVVILERSWVGRHASGATAAGVRTLNRHPAE
CCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCC
IPISLESMDMWHNIESIVAGDCGFHAHGQINVAEYPDHLPALETRFAMMRDAGYRHEELV
CCEEHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHH
DRAELLRLVPAISPHCMAALIARRDGAADPHRTLQAFRRSAEAAGVTIHEGLGVTAIERA
HHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHC
GSDWRVRTDARDFVVPTVVNAAGAWAGKIAAMLGDEIPLGHKASMMVVTERIAPLLRPVV
CCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
SVVGRPLSLKQSDQGTLVIGGGLQGSADIEAQKSFVNFTELAKGARAATDLFPSIGPVRI
HHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
VRAWTGMEAKTDDYLPVIGASPNASGAYHAFGFSGHGFQLVPVVGAILADLIVRGGTNRL
EEECCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHCCCCHHH
IEGFSADRLMQQRAAA
HHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]