| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is gsiC [H]
Identifier: 91790175
GI number: 91790175
Start: 4577184
End: 4578125
Strand: Reverse
Name: gsiC [H]
Synonym: Bpro_4340
Alternate gene names: 91790175
Gene position: 4578125-4577184 (Counterclockwise)
Preceding gene: 91790176
Following gene: 91790174
Centisome position: 88.04
GC content: 59.02
Gene sequence:
>942_bases ATGATGCGATATGCCATCAAGCGCCTGCTATTGGCCATCCCCACACTTCTGGCCATGTTGACCGCAGTTTTCATCCTGGT GCGTTTGGTGCCGGGAGATCCAGCCGCAGTTATGTTGGGCGACCAGGCCAGCGCGGAAGCGCTCGAGGCCTTGCGCAAGC AACTGGGCCTGGATTTGCCTGTTCACCTTCAGTACCTGAGTTTCCTGCGCGACATGCTGTCGGGAAATTTTGGGGTGTCC ATGACCAGTGGAAGAACCGTTCTGCACGAAGTGTCGCTGGTGTTGCCCTGGACGTTGCAATTGACCGCCGCCTCCCTCTT GATCGGCGCGGTCTTCGGCCTGCCGCTGGGAATATGGGCTGCGCTGCGCCGCAACGCATGGCCTGACTACCTTGGTCGCG TGCTTTCCCTTATTGGACTGTCGTTTCCCGCTTTTGTGTCCGCCATCCTGATGTTGCTGGTCTTTGCCGTCGAGTTGCGC TGGTTCCCGGTCATCGGCAACACGGGAGCGCGCACCTTTACGCAGCAACTGCACAACCTGGCGTTGCCCGCCTTTAACTT GGGACTGATCATGACGGCTTATGTCATGCGGGTCACGCGGTCGTCGATGCTGGGTGTGATGGGCGAGGACTATATCCGCA CCGCGCGTGCCAAGGGCGTTCGGCCGATGCGGCTGATCCTGCGGCACGGTCTCCGCAACGCGTTGATCCCCATCGTGACG GTGGTAGGCCTGTACTTTGGCACGTTGATCGGCAACTCGGTGCTGACGGAGATTGTCTTTAACCGACCGGGCCTCGGCAA GCTCATCCTCGGCGCGCTGAACTCGCGGGACTACACCTTGCTGCAAGGGCTGATGGTGGTGTTCGCGTCATGCGTGATCG TGGTCAATCTTCTGACAGACCTGGTTTATGGTTTGGTCGATCCAAGGGTGAAATACAAATGA
Upstream 100 bases:
>100_bases CCATACAGAACCGTCAAGTTGCGGAGGTGGGCTTCTACCGCATTCGCCCGCCACTCAAACCGCTGACGCTCGGAGAGTTG GCATCCCTGGAGCAACCATC
Downstream 100 bases:
>100_bases GTACCGTTAGTATCGTTGCTGCCTCTGCAGTCGTTAAGCCGAACTCCGTGTGGCAAGCCTTGCGCAAGAACCGGATGTCC TGGATAGGCATAGGACTGTT
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 313; Mature: 313
Protein sequence:
>313_residues MMRYAIKRLLLAIPTLLAMLTAVFILVRLVPGDPAAVMLGDQASAEALEALRKQLGLDLPVHLQYLSFLRDMLSGNFGVS MTSGRTVLHEVSLVLPWTLQLTAASLLIGAVFGLPLGIWAALRRNAWPDYLGRVLSLIGLSFPAFVSAILMLLVFAVELR WFPVIGNTGARTFTQQLHNLALPAFNLGLIMTAYVMRVTRSSMLGVMGEDYIRTARAKGVRPMRLILRHGLRNALIPIVT VVGLYFGTLIGNSVLTEIVFNRPGLGKLILGALNSRDYTLLQGLMVVFASCVIVVNLLTDLVYGLVDPRVKYK
Sequences:
>Translated_313_residues MMRYAIKRLLLAIPTLLAMLTAVFILVRLVPGDPAAVMLGDQASAEALEALRKQLGLDLPVHLQYLSFLRDMLSGNFGVS MTSGRTVLHEVSLVLPWTLQLTAASLLIGAVFGLPLGIWAALRRNAWPDYLGRVLSLIGLSFPAFVSAILMLLVFAVELR WFPVIGNTGARTFTQQLHNLALPAFNLGLIMTAYVMRVTRSSMLGVMGEDYIRTARAKGVRPMRLILRHGLRNALIPIVT VVGLYFGTLIGNSVLTEIVFNRPGLGKLILGALNSRDYTLLQGLMVVFASCVIVVNLLTDLVYGLVDPRVKYK >Mature_313_residues MMRYAIKRLLLAIPTLLAMLTAVFILVRLVPGDPAAVMLGDQASAEALEALRKQLGLDLPVHLQYLSFLRDMLSGNFGVS MTSGRTVLHEVSLVLPWTLQLTAASLLIGAVFGLPLGIWAALRRNAWPDYLGRVLSLIGLSFPAFVSAILMLLVFAVELR WFPVIGNTGARTFTQQLHNLALPAFNLGLIMTAYVMRVTRSSMLGVMGEDYIRTARAKGVRPMRLILRHGLRNALIPIVT VVGLYFGTLIGNSVLTEIVFNRPGLGKLILGALNSRDYTLLQGLMVVFASCVIVVNLLTDLVYGLVDPRVKYK
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0601
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=42.4920127795527, Blast_Score=267, Evalue=7e-73, Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=37.5739644970414, Blast_Score=228, Evalue=4e-61, Organism=Escherichia coli, GI1789888, Length=314, Percent_Identity=36.3057324840764, Blast_Score=201, Evalue=5e-53, Organism=Escherichia coli, GI1787497, Length=316, Percent_Identity=34.8101265822785, Blast_Score=187, Evalue=6e-49, Organism=Escherichia coli, GI1787761, Length=309, Percent_Identity=37.8640776699029, Blast_Score=181, Evalue=4e-47, Organism=Escherichia coli, GI1788504, Length=366, Percent_Identity=29.5081967213115, Blast_Score=134, Evalue=7e-33, Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=27.8388278388278, Blast_Score=129, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 34300; Mature: 34300
Theoretical pI: Translated: 10.81; Mature: 10.81
Prosite motif: PS00616 HIS_ACID_PHOSPHAT_1 ; PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRYAIKRLLLAIPTLLAMLTAVFILVRLVPGDPAAVMLGDQASAEALEALRKQLGLDLP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC VHLQYLSFLRDMLSGNFGVSMTSGRTVLHEVSLVLPWTLQLTAASLLIGAVFGLPLGIWA HHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALRRNAWPDYLGRVLSLIGLSFPAFVSAILMLLVFAVELRWFPVIGNTGARTFTQQLHNL HHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHH ALPAFNLGLIMTAYVMRVTRSSMLGVMGEDYIRTARAKGVRPMRLILRHGLRNALIPIVT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH VVGLYFGTLIGNSVLTEIVFNRPGLGKLILGALNSRDYTLLQGLMVVFASCVIVVNLLTD HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LVYGLVDPRVKYK HHHHHHCCCCCCC >Mature Secondary Structure MMRYAIKRLLLAIPTLLAMLTAVFILVRLVPGDPAAVMLGDQASAEALEALRKQLGLDLP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC VHLQYLSFLRDMLSGNFGVSMTSGRTVLHEVSLVLPWTLQLTAASLLIGAVFGLPLGIWA HHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALRRNAWPDYLGRVLSLIGLSFPAFVSAILMLLVFAVELRWFPVIGNTGARTFTQQLHNL HHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHH ALPAFNLGLIMTAYVMRVTRSSMLGVMGEDYIRTARAKGVRPMRLILRHGLRNALIPIVT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH VVGLYFGTLIGNSVLTEIVFNRPGLGKLILGALNSRDYTLLQGLMVVFASCVIVVNLLTD HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LVYGLVDPRVKYK HHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA