Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is gsiC [H]

Identifier: 91790175

GI number: 91790175

Start: 4577184

End: 4578125

Strand: Reverse

Name: gsiC [H]

Synonym: Bpro_4340

Alternate gene names: 91790175

Gene position: 4578125-4577184 (Counterclockwise)

Preceding gene: 91790176

Following gene: 91790174

Centisome position: 88.04

GC content: 59.02

Gene sequence:

>942_bases
ATGATGCGATATGCCATCAAGCGCCTGCTATTGGCCATCCCCACACTTCTGGCCATGTTGACCGCAGTTTTCATCCTGGT
GCGTTTGGTGCCGGGAGATCCAGCCGCAGTTATGTTGGGCGACCAGGCCAGCGCGGAAGCGCTCGAGGCCTTGCGCAAGC
AACTGGGCCTGGATTTGCCTGTTCACCTTCAGTACCTGAGTTTCCTGCGCGACATGCTGTCGGGAAATTTTGGGGTGTCC
ATGACCAGTGGAAGAACCGTTCTGCACGAAGTGTCGCTGGTGTTGCCCTGGACGTTGCAATTGACCGCCGCCTCCCTCTT
GATCGGCGCGGTCTTCGGCCTGCCGCTGGGAATATGGGCTGCGCTGCGCCGCAACGCATGGCCTGACTACCTTGGTCGCG
TGCTTTCCCTTATTGGACTGTCGTTTCCCGCTTTTGTGTCCGCCATCCTGATGTTGCTGGTCTTTGCCGTCGAGTTGCGC
TGGTTCCCGGTCATCGGCAACACGGGAGCGCGCACCTTTACGCAGCAACTGCACAACCTGGCGTTGCCCGCCTTTAACTT
GGGACTGATCATGACGGCTTATGTCATGCGGGTCACGCGGTCGTCGATGCTGGGTGTGATGGGCGAGGACTATATCCGCA
CCGCGCGTGCCAAGGGCGTTCGGCCGATGCGGCTGATCCTGCGGCACGGTCTCCGCAACGCGTTGATCCCCATCGTGACG
GTGGTAGGCCTGTACTTTGGCACGTTGATCGGCAACTCGGTGCTGACGGAGATTGTCTTTAACCGACCGGGCCTCGGCAA
GCTCATCCTCGGCGCGCTGAACTCGCGGGACTACACCTTGCTGCAAGGGCTGATGGTGGTGTTCGCGTCATGCGTGATCG
TGGTCAATCTTCTGACAGACCTGGTTTATGGTTTGGTCGATCCAAGGGTGAAATACAAATGA

Upstream 100 bases:

>100_bases
CCATACAGAACCGTCAAGTTGCGGAGGTGGGCTTCTACCGCATTCGCCCGCCACTCAAACCGCTGACGCTCGGAGAGTTG
GCATCCCTGGAGCAACCATC

Downstream 100 bases:

>100_bases
GTACCGTTAGTATCGTTGCTGCCTCTGCAGTCGTTAAGCCGAACTCCGTGTGGCAAGCCTTGCGCAAGAACCGGATGTCC
TGGATAGGCATAGGACTGTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MMRYAIKRLLLAIPTLLAMLTAVFILVRLVPGDPAAVMLGDQASAEALEALRKQLGLDLPVHLQYLSFLRDMLSGNFGVS
MTSGRTVLHEVSLVLPWTLQLTAASLLIGAVFGLPLGIWAALRRNAWPDYLGRVLSLIGLSFPAFVSAILMLLVFAVELR
WFPVIGNTGARTFTQQLHNLALPAFNLGLIMTAYVMRVTRSSMLGVMGEDYIRTARAKGVRPMRLILRHGLRNALIPIVT
VVGLYFGTLIGNSVLTEIVFNRPGLGKLILGALNSRDYTLLQGLMVVFASCVIVVNLLTDLVYGLVDPRVKYK

Sequences:

>Translated_313_residues
MMRYAIKRLLLAIPTLLAMLTAVFILVRLVPGDPAAVMLGDQASAEALEALRKQLGLDLPVHLQYLSFLRDMLSGNFGVS
MTSGRTVLHEVSLVLPWTLQLTAASLLIGAVFGLPLGIWAALRRNAWPDYLGRVLSLIGLSFPAFVSAILMLLVFAVELR
WFPVIGNTGARTFTQQLHNLALPAFNLGLIMTAYVMRVTRSSMLGVMGEDYIRTARAKGVRPMRLILRHGLRNALIPIVT
VVGLYFGTLIGNSVLTEIVFNRPGLGKLILGALNSRDYTLLQGLMVVFASCVIVVNLLTDLVYGLVDPRVKYK
>Mature_313_residues
MMRYAIKRLLLAIPTLLAMLTAVFILVRLVPGDPAAVMLGDQASAEALEALRKQLGLDLPVHLQYLSFLRDMLSGNFGVS
MTSGRTVLHEVSLVLPWTLQLTAASLLIGAVFGLPLGIWAALRRNAWPDYLGRVLSLIGLSFPAFVSAILMLLVFAVELR
WFPVIGNTGARTFTQQLHNLALPAFNLGLIMTAYVMRVTRSSMLGVMGEDYIRTARAKGVRPMRLILRHGLRNALIPIVT
VVGLYFGTLIGNSVLTEIVFNRPGLGKLILGALNSRDYTLLQGLMVVFASCVIVVNLLTDLVYGLVDPRVKYK

Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=42.4920127795527, Blast_Score=267, Evalue=7e-73,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=37.5739644970414, Blast_Score=228, Evalue=4e-61,
Organism=Escherichia coli, GI1789888, Length=314, Percent_Identity=36.3057324840764, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1787497, Length=316, Percent_Identity=34.8101265822785, Blast_Score=187, Evalue=6e-49,
Organism=Escherichia coli, GI1787761, Length=309, Percent_Identity=37.8640776699029, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI1788504, Length=366, Percent_Identity=29.5081967213115, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=27.8388278388278, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34300; Mature: 34300

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: PS00616 HIS_ACID_PHOSPHAT_1 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRYAIKRLLLAIPTLLAMLTAVFILVRLVPGDPAAVMLGDQASAEALEALRKQLGLDLP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC
VHLQYLSFLRDMLSGNFGVSMTSGRTVLHEVSLVLPWTLQLTAASLLIGAVFGLPLGIWA
HHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALRRNAWPDYLGRVLSLIGLSFPAFVSAILMLLVFAVELRWFPVIGNTGARTFTQQLHNL
HHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHH
ALPAFNLGLIMTAYVMRVTRSSMLGVMGEDYIRTARAKGVRPMRLILRHGLRNALIPIVT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VVGLYFGTLIGNSVLTEIVFNRPGLGKLILGALNSRDYTLLQGLMVVFASCVIVVNLLTD
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVYGLVDPRVKYK
HHHHHHCCCCCCC
>Mature Secondary Structure
MMRYAIKRLLLAIPTLLAMLTAVFILVRLVPGDPAAVMLGDQASAEALEALRKQLGLDLP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC
VHLQYLSFLRDMLSGNFGVSMTSGRTVLHEVSLVLPWTLQLTAASLLIGAVFGLPLGIWA
HHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALRRNAWPDYLGRVLSLIGLSFPAFVSAILMLLVFAVELRWFPVIGNTGARTFTQQLHNL
HHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHH
ALPAFNLGLIMTAYVMRVTRSSMLGVMGEDYIRTARAKGVRPMRLILRHGLRNALIPIVT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VVGLYFGTLIGNSVLTEIVFNRPGLGKLILGALNSRDYTLLQGLMVVFASCVIVVNLLTD
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVYGLVDPRVKYK
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA