| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is gsiB [H]
Identifier: 91790170
GI number: 91790170
Start: 4572241
End: 4573821
Strand: Reverse
Name: gsiB [H]
Synonym: Bpro_4335
Alternate gene names: 91790170
Gene position: 4573821-4572241 (Counterclockwise)
Preceding gene: 91790171
Following gene: 91790168
Centisome position: 87.95
GC content: 58.06
Gene sequence:
>1581_bases ATGAAGGCGGTCGACTATGTGATCGCGTGTCGAGCGCTCCTCATCGCCGCATGTATTGGCCTTGTCGGGCCGGTATTTGC TCAGGAGTCCATCCTCCGCATCGGAAGTGATGCGATTGACATCACTACTCTGGATCCGCACCGCACGGCGGTGTCGGAAG AAAAGGGCTTGATTAGCATGATCTTCGGTGGCTTGGTGAGATTTCCACCCGGTTCCGCTGACCCCGAGAAAATAGAAGGT GATTTGGCCGAGAGCTGGCAGGCTTCTGCTGATGGACTGACCTGGACATTCAAGCTGCGTCACGGTGTGCAGTTCCACCG CAACTATGGCGAGGTGAATGCGGAGGATGTGGTTTATAGCCTAATGCGCGCAGCCGATCCAAAGCGGTCCTCGTTTTCGT CTACCTTTGAGCCGGTGAAGGAAGTGAGCGCGCTCGATTCGCATACGGTGCGCATACAGCTCAAGGCGCCAGTACCCAGT CTGCTGGGACTGGTTGCCAACTACCACGGCGGAATGGTCGTAAGCCGCAAGGCCGACCAGGATCTGAAAGACGCGTTCAA ATTGAAGCCAGTTGGCTTTGGGCCCTTCGAGTTCGTTGAACATCAGAAACAGCGCGAGGTGGTGCTGAAGGCGCACGACA AGTATTTCCGTGGGAAGCCGAAGATAGAGCGCATCGTTTACCGATTCATCCCCTCCGAGGCCGTCCGGGGGCTAGCGTTC GCTACTGGCGAGCTTGACCTGGTCGCCGGCCAGCGCGATCAGCGCTGGGTGCAGCGGGCCCGGCTCTGGGCGCCGCCTAA GGACCAATCGTCCGTCAAAGTCGATGTCTTCGGACCAGGTGAATTTCGTACCCTGATGCTCAATCGGCGCATCAAGCCGC TGGACGACCCGCGTGTTCGGGAAGCCGTAGCACGCGCCGTGGATGTGCAGGAACTAGTTCACTTCGTCGGCGCGGATATC GTCAAGCCTGGCAGATCTGTCATTCCGCCAGGCTACGCAGGTGAGGTAGACGTTGGGCCAAAGTTTCCTTATAACGTCGG CAAGTCAAAAGCTTTGCTGACGGAAGCCGGCTACGCCAACGGCATCACCCTAAGGGCGGTAGTGTCCAGTACCGCCTCGC AACTGTCGGTTATGGATGTGGTGCAGAAACAGCTCAAGCGCGCGGGCATCAACTTAACCATGGACGTGGTCGAGCACGCC GCTTATCACGCGCAGATCCGCAAGGACGTGAGTGCAATCGTCTTCTACGGCGCTGCTCGATTCCCGGTGGCCGATTCCTA CCTCACAGAGTTCTATCACTCCCGCTCCGAGATCGGCGCACCTACTCAGGTTACCAATTTCTCCCACTGCAATGCAGCCG ACAAGGAAATTGATGCGGCGCGCGCAACCCCAAATGCGGCTGCGCGAAGCTCGCTTTGGCGCGTGGCACAGGTGAAGATC AACGCAGATCTCTGCGCCATCCCGCTATTTGATCTGCAGCAGGTCTGGGCCCGTCGCGGTGCGCTCGACTATGGAGTGCC TCTTGAGGGCGCAATGAACCTCTTTCCGCCGATCAACGAAAAATCGACACTGAAGAAATGA
Upstream 100 bases:
>100_bases GACGTCCACCCGTGCCACTGCCCAGTGCGAGATGGGAGCACCCGACGTTCTTATAGAGATGATCGTCACTGCGGCCATCG CAAAAAAGGAAGTAGCATAA
Downstream 100 bases:
>100_bases TCGCTACGAGCAGTACCTGAGTGGTGAACTGCGATCTCGCCGTAATCGGTTGCGGGGTCGACGGCTTCAGTTGCGTACTA CTCGGCCGCGTGATCAGTGG
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 526; Mature: 526
Protein sequence:
>526_residues MKAVDYVIACRALLIAACIGLVGPVFAQESILRIGSDAIDITTLDPHRTAVSEEKGLISMIFGGLVRFPPGSADPEKIEG DLAESWQASADGLTWTFKLRHGVQFHRNYGEVNAEDVVYSLMRAADPKRSSFSSTFEPVKEVSALDSHTVRIQLKAPVPS LLGLVANYHGGMVVSRKADQDLKDAFKLKPVGFGPFEFVEHQKQREVVLKAHDKYFRGKPKIERIVYRFIPSEAVRGLAF ATGELDLVAGQRDQRWVQRARLWAPPKDQSSVKVDVFGPGEFRTLMLNRRIKPLDDPRVREAVARAVDVQELVHFVGADI VKPGRSVIPPGYAGEVDVGPKFPYNVGKSKALLTEAGYANGITLRAVVSSTASQLSVMDVVQKQLKRAGINLTMDVVEHA AYHAQIRKDVSAIVFYGAARFPVADSYLTEFYHSRSEIGAPTQVTNFSHCNAADKEIDAARATPNAAARSSLWRVAQVKI NADLCAIPLFDLQQVWARRGALDYGVPLEGAMNLFPPINEKSTLKK
Sequences:
>Translated_526_residues MKAVDYVIACRALLIAACIGLVGPVFAQESILRIGSDAIDITTLDPHRTAVSEEKGLISMIFGGLVRFPPGSADPEKIEG DLAESWQASADGLTWTFKLRHGVQFHRNYGEVNAEDVVYSLMRAADPKRSSFSSTFEPVKEVSALDSHTVRIQLKAPVPS LLGLVANYHGGMVVSRKADQDLKDAFKLKPVGFGPFEFVEHQKQREVVLKAHDKYFRGKPKIERIVYRFIPSEAVRGLAF ATGELDLVAGQRDQRWVQRARLWAPPKDQSSVKVDVFGPGEFRTLMLNRRIKPLDDPRVREAVARAVDVQELVHFVGADI VKPGRSVIPPGYAGEVDVGPKFPYNVGKSKALLTEAGYANGITLRAVVSSTASQLSVMDVVQKQLKRAGINLTMDVVEHA AYHAQIRKDVSAIVFYGAARFPVADSYLTEFYHSRSEIGAPTQVTNFSHCNAADKEIDAARATPNAAARSSLWRVAQVKI NADLCAIPLFDLQQVWARRGALDYGVPLEGAMNLFPPINEKSTLKK >Mature_526_residues MKAVDYVIACRALLIAACIGLVGPVFAQESILRIGSDAIDITTLDPHRTAVSEEKGLISMIFGGLVRFPPGSADPEKIEG DLAESWQASADGLTWTFKLRHGVQFHRNYGEVNAEDVVYSLMRAADPKRSSFSSTFEPVKEVSALDSHTVRIQLKAPVPS LLGLVANYHGGMVVSRKADQDLKDAFKLKPVGFGPFEFVEHQKQREVVLKAHDKYFRGKPKIERIVYRFIPSEAVRGLAF ATGELDLVAGQRDQRWVQRARLWAPPKDQSSVKVDVFGPGEFRTLMLNRRIKPLDDPRVREAVARAVDVQELVHFVGADI VKPGRSVIPPGYAGEVDVGPKFPYNVGKSKALLTEAGYANGITLRAVVSSTASQLSVMDVVQKQLKRAGINLTMDVVEHA AYHAQIRKDVSAIVFYGAARFPVADSYLTEFYHSRSEIGAPTQVTNFSHCNAADKEIDAARATPNAAARSSLWRVAQVKI NADLCAIPLFDLQQVWARRGALDYGVPLEGAMNLFPPINEKSTLKK
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=499, Percent_Identity=27.8557114228457, Blast_Score=138, Evalue=1e-33, Organism=Escherichia coli, GI1789966, Length=454, Percent_Identity=27.3127753303965, Blast_Score=130, Evalue=3e-31, Organism=Escherichia coli, GI1787551, Length=442, Percent_Identity=25.1131221719457, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1787762, Length=494, Percent_Identity=25.1012145748988, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1789887, Length=479, Percent_Identity=25.0521920668058, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1787495, Length=380, Percent_Identity=25, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI87081878, Length=435, Percent_Identity=23.2183908045977, Blast_Score=69, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 57845; Mature: 57845
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAVDYVIACRALLIAACIGLVGPVFAQESILRIGSDAIDITTLDPHRTAVSEEKGLISM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCHHHH IFGGLVRFPPGSADPEKIEGDLAESWQASADGLTWTFKLRHGVQFHRNYGEVNAEDVVYS HHCCHHCCCCCCCCHHHHCCHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCCCHHHHHHH LMRAADPKRSSFSSTFEPVKEVSALDSHTVRIQLKAPVPSLLGLVANYHGGMVVSRKADQ HHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCH DLKDAFKLKPVGFGPFEFVEHQKQREVVLKAHDKYFRGKPKIERIVYRFIPSEAVRGLAF HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHEE ATGELDLVAGQRDQRWVQRARLWAPPKDQSSVKVDVFGPGEFRTLMLNRRIKPLDDPRVR ECCCEEEEECCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCHHHH EAVARAVDVQELVHFVGADIVKPGRSVIPPGYAGEVDVGPKFPYNVGKSKALLTEAGYAN HHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC GITLRAVVSSTASQLSVMDVVQKQLKRAGINLTMDVVEHAAYHAQIRKDVSAIVFYGAAR CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHEEEECCCC FPVADSYLTEFYHSRSEIGAPTQVTNFSHCNAADKEIDAARATPNAAARSSLWRVAQVKI CCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHCCCCCHHHHHHHHEEEEEEE NADLCAIPLFDLQQVWARRGALDYGVPLEGAMNLFPPINEKSTLKK CCCEEECCHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCHHCCCC >Mature Secondary Structure MKAVDYVIACRALLIAACIGLVGPVFAQESILRIGSDAIDITTLDPHRTAVSEEKGLISM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCHHHH IFGGLVRFPPGSADPEKIEGDLAESWQASADGLTWTFKLRHGVQFHRNYGEVNAEDVVYS HHCCHHCCCCCCCCHHHHCCHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCCCHHHHHHH LMRAADPKRSSFSSTFEPVKEVSALDSHTVRIQLKAPVPSLLGLVANYHGGMVVSRKADQ HHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCH DLKDAFKLKPVGFGPFEFVEHQKQREVVLKAHDKYFRGKPKIERIVYRFIPSEAVRGLAF HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHEE ATGELDLVAGQRDQRWVQRARLWAPPKDQSSVKVDVFGPGEFRTLMLNRRIKPLDDPRVR ECCCEEEEECCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCHHHH EAVARAVDVQELVHFVGADIVKPGRSVIPPGYAGEVDVGPKFPYNVGKSKALLTEAGYAN HHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC GITLRAVVSSTASQLSVMDVVQKQLKRAGINLTMDVVEHAAYHAQIRKDVSAIVFYGAAR CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHEEEECCCC FPVADSYLTEFYHSRSEIGAPTQVTNFSHCNAADKEIDAARATPNAAARSSLWRVAQVKI CCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHCCCCCHHHHHHHHEEEEEEE NADLCAIPLFDLQQVWARRGALDYGVPLEGAMNLFPPINEKSTLKK CCCEEECCHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA