| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91790152
Identifier: 91790152
GI number: 91790152
Start: 4548058
End: 4549131
Strand: Reverse
Name: 91790152
Synonym: Bpro_4315
Alternate gene names: NA
Gene position: 4549131-4548058 (Counterclockwise)
Preceding gene: 91790153
Following gene: 91790151
Centisome position: 87.48
GC content: 62.66
Gene sequence:
>1074_bases ATGACGAAGAGACAAATTCTGGCCGCTGCAGCGGTATCCCTTGCCATGCCAGTCATGGCGCAAACCGCTTCCTCGGTGAC CCTGTACGGGATCCTCAATGTGGCTGTCCGCTCCCAGACTGGCCTGACGAGTACCTACGGGCGATCGCCGGTTGACACCA CCGTTGTTGCGAGCGGCGTGGGCCCCACGAGCCGCTGGGGCCTTCGCGGAACCGAGGATCTTGGCGGCGGGCTGCGCGCG ACGTTCAATCTGGAATCTGGAATCAACGTCGATACGGGCACTCAGGCCAATGCGGTCACCTACTTTGACCGCGCCTCGAC CGTCGGACTCGCCGGAGCGTGGGGTACGACGACAGTGGGTCGTCAGAACACATTGCTCGCTGACTCCGCTGGCGTTGCCG ACCCGATCGGGCTCAGGTTCGCGGGTCTGAACCCGAACATTCAGAACGTCAGTCTCACGGGCCATCAGCTCGGTGTCGAG TACGGCACCACGGGCTCCAGTACTGCGTCGAACCGGCAGAACAACTCGATCAAGTACTCGGTTCCGATCGGCCCCGTGGT GGCTCGCGCGATGCACAGCTTTGGCGAAGTGGCGCAGTCGTCCTCCAGGAAAAGCACTTCAGGACTGGGAGTCGACTACC TGACGGAAGAGCTGAAGATCACGACGGCGTACACCCGCTTCAAGGATGCCAACGACCGGCGGTTGACGGCCGCGAACGTG GGCGCCAGCTGGCTCGCACTTCCGTCGCTGCGCGTCATGGCGAACATGGGTTACAACCGCGGCTTCACCTCAGCGACCGC CGAGGCTACCAACCGCATCGTTGCCGGCGGCGTCAACTATTCCATTGCACCCGCCATCGATCTCCTGGCCGGGTACTACA AGGTGGATCGCCGCCGCACTGCGCAGCCCGACGACGGCTTCAAGCGCTTGCTCGCCTTCGTCGAGTACAAGCTCTCGCGA CGCAGCAAGGTGTACCTGGAGCTGGATACAACGCGCTGGAAGGGCAATTACCTGGGGGCGGGTAACAAGTCGACGTCCAA TGGCGTCAGTCTGGGCATTACGCACGCGTTCTAA
Upstream 100 bases:
>100_bases ACCAAACCCATCAGACATAGCTGCCCGTGCCGCGTGTGGCGGGCTGCAGCGATCACCGTTGCAGAAGAACCCAACAACCA CTTGGAGAAGGAAAAGAAAG
Downstream 100 bases:
>100_bases CTGTACTCCCCAGGCTCTCCAGTTTTGAAGCCTCTTGCACAAGCAACCAGGCTTCATTTTTTTCTTTAGAAGGCACTTGC ATGTTGAATAGACGACAAGC
Product: putative transmembrane outer membrane porin signal peptide protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 357; Mature: 356
Protein sequence:
>357_residues MTKRQILAAAAVSLAMPVMAQTASSVTLYGILNVAVRSQTGLTSTYGRSPVDTTVVASGVGPTSRWGLRGTEDLGGGLRA TFNLESGINVDTGTQANAVTYFDRASTVGLAGAWGTTTVGRQNTLLADSAGVADPIGLRFAGLNPNIQNVSLTGHQLGVE YGTTGSSTASNRQNNSIKYSVPIGPVVARAMHSFGEVAQSSSRKSTSGLGVDYLTEELKITTAYTRFKDANDRRLTAANV GASWLALPSLRVMANMGYNRGFTSATAEATNRIVAGGVNYSIAPAIDLLAGYYKVDRRRTAQPDDGFKRLLAFVEYKLSR RSKVYLELDTTRWKGNYLGAGNKSTSNGVSLGITHAF
Sequences:
>Translated_357_residues MTKRQILAAAAVSLAMPVMAQTASSVTLYGILNVAVRSQTGLTSTYGRSPVDTTVVASGVGPTSRWGLRGTEDLGGGLRA TFNLESGINVDTGTQANAVTYFDRASTVGLAGAWGTTTVGRQNTLLADSAGVADPIGLRFAGLNPNIQNVSLTGHQLGVE YGTTGSSTASNRQNNSIKYSVPIGPVVARAMHSFGEVAQSSSRKSTSGLGVDYLTEELKITTAYTRFKDANDRRLTAANV GASWLALPSLRVMANMGYNRGFTSATAEATNRIVAGGVNYSIAPAIDLLAGYYKVDRRRTAQPDDGFKRLLAFVEYKLSR RSKVYLELDTTRWKGNYLGAGNKSTSNGVSLGITHAF >Mature_356_residues TKRQILAAAAVSLAMPVMAQTASSVTLYGILNVAVRSQTGLTSTYGRSPVDTTVVASGVGPTSRWGLRGTEDLGGGLRAT FNLESGINVDTGTQANAVTYFDRASTVGLAGAWGTTTVGRQNTLLADSAGVADPIGLRFAGLNPNIQNVSLTGHQLGVEY GTTGSSTASNRQNNSIKYSVPIGPVVARAMHSFGEVAQSSSRKSTSGLGVDYLTEELKITTAYTRFKDANDRRLTAANVG ASWLALPSLRVMANMGYNRGFTSATAEATNRIVAGGVNYSIAPAIDLLAGYYKVDRRRTAQPDDGFKRLLAFVEYKLSRR SKVYLELDTTRWKGNYLGAGNKSTSNGVSLGITHAF
Specific function: Forms anion selective channels [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To bacterial outer membrane proteins and porins [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001702 - InterPro: IPR002299 [H]
Pfam domain/function: PF00267 Porin_1 [H]
EC number: NA
Molecular weight: Translated: 37714; Mature: 37583
Theoretical pI: Translated: 10.35; Mature: 10.35
Prosite motif: PS00141 ASP_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKRQILAAAAVSLAMPVMAQTASSVTLYGILNVAVRSQTGLTSTYGRSPVDTTVVASGV CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEECCC GPTSRWGLRGTEDLGGGLRATFNLESGINVDTGTQANAVTYFDRASTVGLAGAWGTTTVG CCCCCCCCCCCHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCC RQNTLLADSAGVADPIGLRFAGLNPNIQNVSLTGHQLGVEYGTTGSSTASNRQNNSIKYS CCCEEEECCCCCCCCCCEEEECCCCCCCEEEECCCEECEEECCCCCCCCCCCCCCCEEEE VPIGPVVARAMHSFGEVAQSSSRKSTSGLGVDYLTEELKITTAYTRFKDANDRRLTAANV CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHEEEEEEEHCCCCCCCCEEEEECC GASWLALPSLRVMANMGYNRGFTSATAEATNRIVAGGVNYSIAPAIDLLAGYYKVDRRRT CCHHHHHCHHHHHHHCCCCCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC AQPDDGFKRLLAFVEYKLSRRSKVYLELDTTRWKGNYLGAGNKSTSNGVSLGITHAF CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCEECCCEECCCCCCCCCCEEEEEEECC >Mature Secondary Structure TKRQILAAAAVSLAMPVMAQTASSVTLYGILNVAVRSQTGLTSTYGRSPVDTTVVASGV CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEECCC GPTSRWGLRGTEDLGGGLRATFNLESGINVDTGTQANAVTYFDRASTVGLAGAWGTTTVG CCCCCCCCCCCHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCC RQNTLLADSAGVADPIGLRFAGLNPNIQNVSLTGHQLGVEYGTTGSSTASNRQNNSIKYS CCCEEEECCCCCCCCCCEEEECCCCCCCEEEECCCEECEEECCCCCCCCCCCCCCCEEEE VPIGPVVARAMHSFGEVAQSSSRKSTSGLGVDYLTEELKITTAYTRFKDANDRRLTAANV CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHEEEEEEEHCCCCCCCCEEEEECC GASWLALPSLRVMANMGYNRGFTSATAEATNRIVAGGVNYSIAPAIDLLAGYYKVDRRRT CCHHHHHCHHHHHHHCCCCCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC AQPDDGFKRLLAFVEYKLSRRSKVYLELDTTRWKGNYLGAGNKSTSNGVSLGITHAF CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCEECCCEECCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1658537; 12910271 [H]