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The map label for this gene is ykgD [C]

Identifier: 91790017

GI number: 91790017

Start: 4393939

End: 4394805

Strand: Reverse

Name: ykgD [C]

Synonym: Bpro_4179

Alternate gene names: 91790017

Gene position: 4394805-4393939 (Counterclockwise)

Preceding gene: 91790019

Following gene: 91790015

Centisome position: 84.51

GC content: 65.74

Gene sequence:

>867_bases
ATGATTTGCAATCAAAAGTTCACTTATGTTAGCCATTCGTTCAAAATGATCCCTCCCGTCCGACTGGACCGCCTCTCCGC
CTTGCTCGAAGGACTGGCGCCCCGGGTAGAGATGATGCGGCCAGTGCCCGGCGCAGCGGCACTCAGCCTGGCTGCAACGC
CAGGCCAGCTGCTGTATCTGCACCTGGTGGCGCAAGGCGGAGTGCGCCTGAGCGTTCCCGGCCAGGACCCGGTTGCCGTC
CCCGCGCCCGCCATCGTCATTTGCCGCGCCGACACCGCGCACGCCTTGCAGCCGCTGTCCGGCAACGCATTTGAACCGCT
GACCAGCGCTCAGGCCTTTTTCGACGGCCCCGTGGCCTCCCTGCTGCTGGGCGAATTTGCCCGGCCACTGGTGGTGCCGC
TGGATGGCGCGGATGCCTCACTGAGGCATGTGATCGAGCTGATCTCTTCCGAGCTTCTGGAGCCGCGTTGCGGCCAGCCG
GCACTGCTGGACCGGGCGGGCGACATTCTGTTGATTGGCCTGCTGCGGCACCTGATTGCGCACCCCCGCAGCACGCGCGG
GCTTTTCAACGGCCTGTCCGATCCGCGCATTGCTGCCGCCTTGGTGGCCATACACGCCGCCCCGCAAAACGACTGGAACC
TGGACACCCTGGCCAAACAGGCCGGCATGTCCCGTACCTCGTTTGCCACCCGGTTTCGCGAAGTCATGGGCCACCCGCCG
GGCAAGTATTTGGGCCAGGTGCGCCTGTCGATTGCCCACCGCGCCGTGCAGTCAGGGCTGGGGCTGAAGAGGGCCGCCAA
AGACTCTGGGTACACCAGTGTGTCGGCGCTCTCGCGTGCCTTGTCGCGTGCCAGGGTGGTCGACTAG

Upstream 100 bases:

>100_bases
CCAACATGGCCAAATGGCGGACGCCAAAGTCAGCGGGAGCAGGCGCGACAGCCAGATGAGTTGCGCCCTTTGGGTTTGTC
CGATGCCTGCAGTATGAAGT

Downstream 100 bases:

>100_bases
AAAGGCCACGCGGTGCTGACGGCAAAACGCAGCAGCATTGGCCCGCGTAGCTCTCAGCGCAGCGCCATGTGTTGAGCCAG
ATGGCTGAACACCGTGGAGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MICNQKFTYVSHSFKMIPPVRLDRLSALLEGLAPRVEMMRPVPGAAALSLAATPGQLLYLHLVAQGGVRLSVPGQDPVAV
PAPAIVICRADTAHALQPLSGNAFEPLTSAQAFFDGPVASLLLGEFARPLVVPLDGADASLRHVIELISSELLEPRCGQP
ALLDRAGDILLIGLLRHLIAHPRSTRGLFNGLSDPRIAAALVAIHAAPQNDWNLDTLAKQAGMSRTSFATRFREVMGHPP
GKYLGQVRLSIAHRAVQSGLGLKRAAKDSGYTSVSALSRALSRARVVD

Sequences:

>Translated_288_residues
MICNQKFTYVSHSFKMIPPVRLDRLSALLEGLAPRVEMMRPVPGAAALSLAATPGQLLYLHLVAQGGVRLSVPGQDPVAV
PAPAIVICRADTAHALQPLSGNAFEPLTSAQAFFDGPVASLLLGEFARPLVVPLDGADASLRHVIELISSELLEPRCGQP
ALLDRAGDILLIGLLRHLIAHPRSTRGLFNGLSDPRIAAALVAIHAAPQNDWNLDTLAKQAGMSRTSFATRFREVMGHPP
GKYLGQVRLSIAHRAVQSGLGLKRAAKDSGYTSVSALSRALSRARVVD
>Mature_288_residues
MICNQKFTYVSHSFKMIPPVRLDRLSALLEGLAPRVEMMRPVPGAAALSLAATPGQLLYLHLVAQGGVRLSVPGQDPVAV
PAPAIVICRADTAHALQPLSGNAFEPLTSAQAFFDGPVASLLLGEFARPLVVPLDGADASLRHVIELISSELLEPRCGQP
ALLDRAGDILLIGLLRHLIAHPRSTRGLFNGLSDPRIAAALVAIHAAPQNDWNLDTLAKQAGMSRTSFATRFREVMGHPP
GKYLGQVRLSIAHRAVQSGLGLKRAAKDSGYTSVSALSRALSRARVVD

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=272, Percent_Identity=24.6323529411765, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30636; Mature: 30636

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICNQKFTYVSHSFKMIPPVRLDRLSALLEGLAPRVEMMRPVPGAAALSLAATPGQLLYL
CCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCHHHHEEECCCCCEEEH
HLVAQGGVRLSVPGQDPVAVPAPAIVICRADTAHALQPLSGNAFEPLTSAQAFFDGPVAS
EEECCCCEEEECCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCHHHHHHHHCCHHHH
LLLGEFARPLVVPLDGADASLRHVIELISSELLEPRCGQPALLDRAGDILLIGLLRHLIA
HHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHC
HPRSTRGLFNGLSDPRIAAALVAIHAAPQNDWNLDTLAKQAGMSRTSFATRFREVMGHPP
CCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCC
GKYLGQVRLSIAHRAVQSGLGLKRAAKDSGYTSVSALSRALSRARVVD
HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MICNQKFTYVSHSFKMIPPVRLDRLSALLEGLAPRVEMMRPVPGAAALSLAATPGQLLYL
CCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCHHHHEEECCCCCEEEH
HLVAQGGVRLSVPGQDPVAVPAPAIVICRADTAHALQPLSGNAFEPLTSAQAFFDGPVAS
EEECCCCEEEECCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCHHHHHHHHCCHHHH
LLLGEFARPLVVPLDGADASLRHVIELISSELLEPRCGQPALLDRAGDILLIGLLRHLIA
HHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHC
HPRSTRGLFNGLSDPRIAAALVAIHAAPQNDWNLDTLAKQAGMSRTSFATRFREVMGHPP
CCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCC
GKYLGQVRLSIAHRAVQSGLGLKRAAKDSGYTSVSALSRALSRARVVD
HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]