| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is fdxA [H]
Identifier: 91789908
GI number: 91789908
Start: 4278234
End: 4278563
Strand: Direct
Name: fdxA [H]
Synonym: Bpro_4069
Alternate gene names: 91789908
Gene position: 4278234-4278563 (Clockwise)
Preceding gene: 91789895
Following gene: 91789909
Centisome position: 82.27
GC content: 55.76
Gene sequence:
>330_bases ATGACCCATGTAGTAACTGATGCATGCATCAAATGCAAATACACCGATTGCGTGGATGTCTGTCCGGTGGACTGCTTCAG GGAAGGTCCCGACTTTCTGGTGATTGATCCGGACGAATGCATTGACTGCGCCGTCTGCATTCCGGAGTGTCCTGTCAATG CCATCTATGCGGACACGGACACACCCGGACAGTTCCAACCCTTTTTAGAACTTAACGAACGCCTGGCCAAGCTGTGGCCC ACCCTCTCCAGGCGCACCGCGCCCCTGCCGACGGCGGAGCAATGGAAAGACAAAACCGGTAAGCTGGCGAGCGTCAATCT CGATCGCTGA
Upstream 100 bases:
>100_bases GCTCACTACATTTAAATGTTGCATTCACTACATTAACGTGGCACATTGTTGCCATTGGACGGCCGCCCGCCACCCTGGCC AACGCCATGAAGGAGCACCT
Downstream 100 bases:
>100_bases AAACTTCAACCCAACCACCCAGTAGTCCATCACCATGAGCGCATTTAACGAAGAAACCGTCCTGTCCGTCCACCATTGGA CCGACAAGCTGTTTACCTTC
Product: 4Fe-4S ferredoxin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 109; Mature: 108
Protein sequence:
>109_residues MTHVVTDACIKCKYTDCVDVCPVDCFREGPDFLVIDPDECIDCAVCIPECPVNAIYADTDTPGQFQPFLELNERLAKLWP TLSRRTAPLPTAEQWKDKTGKLASVNLDR
Sequences:
>Translated_109_residues MTHVVTDACIKCKYTDCVDVCPVDCFREGPDFLVIDPDECIDCAVCIPECPVNAIYADTDTPGQFQPFLELNERLAKLWP TLSRRTAPLPTAEQWKDKTGKLASVNLDR >Mature_108_residues THVVTDACIKCKYTDCVDVCPVDCFREGPDFLVIDPDECIDCAVCIPECPVNAIYADTDTPGQFQPFLELNERLAKLWPT LSRRTAPLPTAEQWKDKTGKLASVNLDR
Specific function: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions [H]
COG id: COG1146
COG function: function code C; Ferredoxin
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR000813 - InterPro: IPR022569 [H]
Pfam domain/function: PF11953 DUF3470 [H]
EC number: NA
Molecular weight: Translated: 12206; Mature: 12075
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
8.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 9.2 %Cys+Met (Translated Protein) 8.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 8.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHVVTDACIKCKYTDCVDVCPVDCFREGPDFLVIDPDECIDCAVCIPECPVNAIYADTD CCCCCCCCEEEECCCCCCCCCCCHHHCCCCCEEEECCCCCCEEEEECCCCCCCEEEECCC TPGQFQPFLELNERLAKLWPTLSRRTAPLPTAEQWKDKTGKLASVNLDR CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEECCC >Mature Secondary Structure THVVTDACIKCKYTDCVDVCPVDCFREGPDFLVIDPDECIDCAVCIPECPVNAIYADTD CCCCCCCEEEECCCCCCCCCCCHHHCCCCCEEEECCCCCCEEEEECCCCCCCEEEECCC TPGQFQPFLELNERLAKLWPTLSRRTAPLPTAEQWKDKTGKLASVNLDR CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12534463 [H]