| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is livJ [C]
Identifier: 91789899
GI number: 91789899
Start: 4267526
End: 4268680
Strand: Reverse
Name: livJ [C]
Synonym: Bpro_4060
Alternate gene names: 91789899
Gene position: 4268680-4267526 (Counterclockwise)
Preceding gene: 91789900
Following gene: 91789898
Centisome position: 82.09
GC content: 61.65
Gene sequence:
>1155_bases ATGAACATGATGTCGCGAGTGGTCCGGTGGAACTGGGTGATGTTTGTCCTGGCCCTGGCCGCCGTGTTGCCTGTCCGCGC CGAGCCTGGCGTGAGCGACACGGCCATTGCGGTCGGGCAATCGGCGGTATTTAGCGGGCCGGTTGCCGCGACCGGGAACA ACTACCGGCGCGGTATCGAACTCTACTTCGAGCAGGCGAACAAGGCCGGTGGCGTGCACGGGCGCAAACTGCAGCTGACA GCGCTGGACGACGCCTACGATCCCAAACGCACGGTCGAAAACACCAAGCTTCTCATCGAGCAAAACAAGGTGTTTGCGCT GATCGGCTATGTGGCCACGGCCAATTTGATTGCGGCCATGCCGCTCGCCGAGGAGGCCAAGGTTCCGATGTTCGCGCCCC TGGTGGGCACGACTTCCATCCGGCTCAAGCACAACCACTATCTTTTTCACGTGAGGGCGAGCTACAAAACCGAACTGGCC CGGATTACCCAGCAGCTGGCAGTGGTCGGCAACGACAAGGTGGCCGTGGTTTACCAGGACAGCGTTTTCGGCAAGTCCAA CCTGGACACCCTGCTCGAGCTCATCAAGGCCGAGAAGCTACAGGTCGTCAAAACAATTCCCATGGCCATTGCCGCGACGA GTGCCGCCGACATTGCAGCGCAGATCAAGGAAGCGTCGCCCAACGTCATCATCATGATCATGGCCGGCACAATGACGGAA GTGCTGATCAGGGATGTGCGTGCCGCCGGTTTGGGCGCACCGCTTTACACCATCTCGGTTGGCCTGGCGGACGCCAAGGC CTCGGCCGCCCGCTTGAACGGCGCCTTGCGCGGCGTCATCACGGCCAGCATCGTCCCGTCGCCGACACTGGAGCGTTACG GCGTCGTCAAGGAGTACCGCAAGGCGCTGGGCACGTCGGCGGGGTCGGGCGACAACTACACCGTGCTTGAAGGTTATATT GCGGCCAAGGCTTTCGTCGAAGGGCTGCGCCGCGCGGGGCGCGCTCTGACCCGGGAACACTTTATAGCGGCGCTGGAAGG ATTCGGCAATCTGGATCTGGGCGACTTCCGGGTCGACTACAGCCCGAAAAACCACAACGGCTCCAGCTTCGTGGAGCTTG AGATGTACACCGCAGCAGGCACTTTGATTCGATGA
Upstream 100 bases:
>100_bases CGTGGTGCAGGACCCCGTGGCCGTGGCCCCCAAAAAACAGTTCTTCAACGCGCGGGCCAATCACTGCGTGAACATTGGTT AAAACAAAAAGGTAAACCTC
Downstream 100 bases:
>100_bases CATCCAGGGTCGTGACTCTCGGCGTTAACCAGGTGAGGCGCACGCTGGCTGTTTCAGCGCAGGTTTCCCTGCTTGAAGTG CTGCGCAACGACCTGGAACT
Product: extracellular ligand-binding receptor
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 384; Mature: 384
Protein sequence:
>384_residues MNMMSRVVRWNWVMFVLALAAVLPVRAEPGVSDTAIAVGQSAVFSGPVAATGNNYRRGIELYFEQANKAGGVHGRKLQLT ALDDAYDPKRTVENTKLLIEQNKVFALIGYVATANLIAAMPLAEEAKVPMFAPLVGTTSIRLKHNHYLFHVRASYKTELA RITQQLAVVGNDKVAVVYQDSVFGKSNLDTLLELIKAEKLQVVKTIPMAIAATSAADIAAQIKEASPNVIIMIMAGTMTE VLIRDVRAAGLGAPLYTISVGLADAKASAARLNGALRGVITASIVPSPTLERYGVVKEYRKALGTSAGSGDNYTVLEGYI AAKAFVEGLRRAGRALTREHFIAALEGFGNLDLGDFRVDYSPKNHNGSSFVELEMYTAAGTLIR
Sequences:
>Translated_384_residues MNMMSRVVRWNWVMFVLALAAVLPVRAEPGVSDTAIAVGQSAVFSGPVAATGNNYRRGIELYFEQANKAGGVHGRKLQLT ALDDAYDPKRTVENTKLLIEQNKVFALIGYVATANLIAAMPLAEEAKVPMFAPLVGTTSIRLKHNHYLFHVRASYKTELA RITQQLAVVGNDKVAVVYQDSVFGKSNLDTLLELIKAEKLQVVKTIPMAIAATSAADIAAQIKEASPNVIIMIMAGTMTE VLIRDVRAAGLGAPLYTISVGLADAKASAARLNGALRGVITASIVPSPTLERYGVVKEYRKALGTSAGSGDNYTVLEGYI AAKAFVEGLRRAGRALTREHFIAALEGFGNLDLGDFRVDYSPKNHNGSSFVELEMYTAAGTLIR >Mature_384_residues MNMMSRVVRWNWVMFVLALAAVLPVRAEPGVSDTAIAVGQSAVFSGPVAATGNNYRRGIELYFEQANKAGGVHGRKLQLT ALDDAYDPKRTVENTKLLIEQNKVFALIGYVATANLIAAMPLAEEAKVPMFAPLVGTTSIRLKHNHYLFHVRASYKTELA RITQQLAVVGNDKVAVVYQDSVFGKSNLDTLLELIKAEKLQVVKTIPMAIAATSAADIAAQIKEASPNVIIMIMAGTMTE VLIRDVRAAGLGAPLYTISVGLADAKASAARLNGALRGVITASIVPSPTLERYGVVKEYRKALGTSAGSGDNYTVLEGYI AAKAFVEGLRRAGRALTREHFIAALEGFGNLDLGDFRVDYSPKNHNGSSFVELEMYTAAGTLIR
Specific function: Component of an amino-acid transport system (Potential) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the leucine-binding protein family [H]
Homologues:
None
Paralogues:
None
Copy number: 10140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 8822 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal med
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001828 [H]
Pfam domain/function: PF01094 ANF_receptor [H]
EC number: NA
Molecular weight: Translated: 41257; Mature: 41257
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMMSRVVRWNWVMFVLALAAVLPVRAEPGVSDTAIAVGQSAVFSGPVAATGNNYRRGIE CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCCHHCCCCEEECCCCCHHHHH LYFEQANKAGGVHGRKLQLTALDDAYDPKRTVENTKLLIEQNKVFALIGYVATANLIAAM HHEEHHCCCCCCCCCEEEEEECCCCCCCHHHHCCCEEEEECCCEEEEHHHHHHHHHHHHC PLAEEAKVPMFAPLVGTTSIRLKHNHYLFHVRASYKTELARITQQLAVVGNDKVAVVYQD CCCCCCCCCEEEEECCCEEEEEEECEEEEEEECCHHHHHHHHHHHHHEECCCEEEEEEEC SVFGKSNLDTLLELIKAEKLQVVKTIPMAIAATSAADIAAQIKEASPNVIIMIMAGTMTE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCHHHH VLIRDVRAAGLGAPLYTISVGLADAKASAARLNGALRGVITASIVPSPTLERYGVVKEYR HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHH KALGTSAGSGDNYTVLEGYIAAKAFVEGLRRAGRALTREHFIAALEGFGNLDLGDFRVDY HHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE SPKNHNGSSFVELEMYTAAGTLIR CCCCCCCCEEEEEEEEECCCCCCC >Mature Secondary Structure MNMMSRVVRWNWVMFVLALAAVLPVRAEPGVSDTAIAVGQSAVFSGPVAATGNNYRRGIE CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCCHHCCCCEEECCCCCHHHHH LYFEQANKAGGVHGRKLQLTALDDAYDPKRTVENTKLLIEQNKVFALIGYVATANLIAAM HHEEHHCCCCCCCCCEEEEEECCCCCCCHHHHCCCEEEEECCCEEEEHHHHHHHHHHHHC PLAEEAKVPMFAPLVGTTSIRLKHNHYLFHVRASYKTELARITQQLAVVGNDKVAVVYQD CCCCCCCCCEEEEECCCEEEEEEECEEEEEEECCHHHHHHHHHHHHHEECCCEEEEEEEC SVFGKSNLDTLLELIKAEKLQVVKTIPMAIAATSAADIAAQIKEASPNVIIMIMAGTMTE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCHHHH VLIRDVRAAGLGAPLYTISVGLADAKASAARLNGALRGVITASIVPSPTLERYGVVKEYR HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHH KALGTSAGSGDNYTVLEGYIAAKAFVEGLRRAGRALTREHFIAALEGFGNLDLGDFRVDY HHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE SPKNHNGSSFVELEMYTAAGTLIR CCCCCCCCEEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA