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The map label for this gene is yfdE [H]

Identifier: 91789876

GI number: 91789876

Start: 4237096

End: 4238397

Strand: Direct

Name: yfdE [H]

Synonym: Bpro_4036

Alternate gene names: 91789876

Gene position: 4237096-4238397 (Clockwise)

Preceding gene: 91789875

Following gene: 91789877

Centisome position: 81.48

GC content: 67.36

Gene sequence:

>1302_bases
ATGCGAAGGCCGCGCGCCACAAACAGTAATGGACGCGAAGGGGCCGCAACCGCACACTACGCGGCCATGGACACCACTAC
ATCTGTCAATCGCGGCCCGCTGGCTGGCCTCAAGGTTCTTGAACTCGGGCAACTGATCGCCGGGCCGTTTGCCGCCAAAA
CGCTGGCCGACTTTGGCGCCGACGTCGTCAAGATCGAACCGCCCGGCGCGGGCGACCCGCTGCGTAAATGGCGGCTGCTC
AAGGATGGCACCTCGGTCTGGTGGCAGGTGCAGTCGCGCAACAAGCGCTCGCTGGCACTCGACCTGAAAGACCCGCAAGC
CCAGGACATCGTGCGCAAACTGGCACGGGACGCCGACGTGCTGATCGAGAACTTCCGGCCCGGCGCCATGGAAGGCTGGG
GCCTGGGGCCCGACGAACTGCTCAAGCTCAACCCGCGCCTGATCATGCTGCGCATCAGCGGCTACGGCCAGACCGGCCCC
TACCGCGACCGCCCCGGCTTTGGCGTGGTGGCCGAAGCGATGAGCGGCTTGCGCCACCTGACGGCCGAGCCGGGCCGCGT
GCCGGTGCGCGTCGGCGTGAGCATTGGCGACACGCTGGCCGCGCTGCATGGCGTGATCGGCATCCTGCTGGCGCTGCACC
ATCGCACGGCCCACGGCGTCGGCCAGGTGATCGACGTGGCGCTGTATGAAGCGGTGTTCAATTGCATGGAAAGCCTGCTG
CCCGAATACAGCGCGTTTGGCGCCGTGCGCGGCCCGGCCGGCAGCGCCCTGCCCGGCATTGCGCCGAGCAATGCCTACCG
CTGCAAAGACGACGGTTACGCCCTCATTGCGGGCAATGGCGACAGCATTTTCAAACGGCTGATGGCCGTGATCGGCCGCG
ACGACCTGGGAGCCGACCCTCTGCTTTCCGACAACGCCGGCCGGGTAGCACGCGTCGCCGAAATCGACGAAGCCATCGGC
CAATGGGCCGCGCAGCGCACGGTCGATGAGGTGCTGGCGGCGCTCGACAAGGCCTCGGTGCCGGCAGGCCGCATCTACAC
GGTGGCTGACATTGCCGCCGACCCGCACTACCAGGCGCGCGGCATGCTGGACAGCGTGCAGATGGCCGACGGCAGCACGC
TGGCCGTGCCCGGCATCACGCCCAAGCTGTCGCTCACACCCGGCGGTCACCGGCGCAACGCGCCCGTGCTGGGCCAGGAC
ACCGACGCCGTGCTGCATGAACTCGGCCTCACGCCTGAACAGATTCAGGGCCTCAAGGACAAAGGTATCGTTTCATGCAC
TGCTACAGGAGCCCAATCATGA

Upstream 100 bases:

>100_bases
GACAGCTGGGCACAACGCCGATTGCTGGTCGCCACCGGCGGCAATGAAAGCGATGCAGCCACTGCTTCGCTGGTGAACTT
CCTGGTTCAGCCTTCGCAAA

Downstream 100 bases:

>100_bases
CAACACGGATCTTCTTCAATGAAGTCGCCACGCGCGACGGCTTCCAGATCGAGCCGACCTTCATCCCGACCGATACCAAG
GTGGCGCTGGTCGATGCCCT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MRRPRATNSNGREGAATAHYAAMDTTTSVNRGPLAGLKVLELGQLIAGPFAAKTLADFGADVVKIEPPGAGDPLRKWRLL
KDGTSVWWQVQSRNKRSLALDLKDPQAQDIVRKLARDADVLIENFRPGAMEGWGLGPDELLKLNPRLIMLRISGYGQTGP
YRDRPGFGVVAEAMSGLRHLTAEPGRVPVRVGVSIGDTLAALHGVIGILLALHHRTAHGVGQVIDVALYEAVFNCMESLL
PEYSAFGAVRGPAGSALPGIAPSNAYRCKDDGYALIAGNGDSIFKRLMAVIGRDDLGADPLLSDNAGRVARVAEIDEAIG
QWAAQRTVDEVLAALDKASVPAGRIYTVADIAADPHYQARGMLDSVQMADGSTLAVPGITPKLSLTPGGHRRNAPVLGQD
TDAVLHELGLTPEQIQGLKDKGIVSCTATGAQS

Sequences:

>Translated_433_residues
MRRPRATNSNGREGAATAHYAAMDTTTSVNRGPLAGLKVLELGQLIAGPFAAKTLADFGADVVKIEPPGAGDPLRKWRLL
KDGTSVWWQVQSRNKRSLALDLKDPQAQDIVRKLARDADVLIENFRPGAMEGWGLGPDELLKLNPRLIMLRISGYGQTGP
YRDRPGFGVVAEAMSGLRHLTAEPGRVPVRVGVSIGDTLAALHGVIGILLALHHRTAHGVGQVIDVALYEAVFNCMESLL
PEYSAFGAVRGPAGSALPGIAPSNAYRCKDDGYALIAGNGDSIFKRLMAVIGRDDLGADPLLSDNAGRVARVAEIDEAIG
QWAAQRTVDEVLAALDKASVPAGRIYTVADIAADPHYQARGMLDSVQMADGSTLAVPGITPKLSLTPGGHRRNAPVLGQD
TDAVLHELGLTPEQIQGLKDKGIVSCTATGAQS
>Mature_433_residues
MRRPRATNSNGREGAATAHYAAMDTTTSVNRGPLAGLKVLELGQLIAGPFAAKTLADFGADVVKIEPPGAGDPLRKWRLL
KDGTSVWWQVQSRNKRSLALDLKDPQAQDIVRKLARDADVLIENFRPGAMEGWGLGPDELLKLNPRLIMLRISGYGQTGP
YRDRPGFGVVAEAMSGLRHLTAEPGRVPVRVGVSIGDTLAALHGVIGILLALHHRTAHGVGQVIDVALYEAVFNCMESLL
PEYSAFGAVRGPAGSALPGIAPSNAYRCKDDGYALIAGNGDSIFKRLMAVIGRDDLGADPLLSDNAGRVARVAEIDEAIG
QWAAQRTVDEVLAALDKASVPAGRIYTVADIAADPHYQARGMLDSVQMADGSTLAVPGITPKLSLTPGGHRRNAPVLGQD
TDAVLHELGLTPEQIQGLKDKGIVSCTATGAQS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=380, Percent_Identity=31.5789473684211, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI300863124, Length=406, Percent_Identity=30.0492610837438, Blast_Score=191, Evalue=9e-49,
Organism=Homo sapiens, GI300863126, Length=380, Percent_Identity=29.2105263157895, Blast_Score=167, Evalue=1e-41,
Organism=Homo sapiens, GI266456254, Length=404, Percent_Identity=30.4455445544554, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI42794625, Length=403, Percent_Identity=30.5210918114144, Blast_Score=149, Evalue=6e-36,
Organism=Homo sapiens, GI13376042, Length=406, Percent_Identity=27.0935960591133, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI266458393, Length=262, Percent_Identity=34.7328244274809, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI266458397, Length=257, Percent_Identity=35.408560311284, Blast_Score=123, Evalue=4e-28,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=42.4657534246575, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI42822893, Length=170, Percent_Identity=38.8235294117647, Blast_Score=106, Evalue=5e-23,
Organism=Escherichia coli, GI87082093, Length=338, Percent_Identity=34.3195266272189, Blast_Score=208, Evalue=6e-55,
Organism=Escherichia coli, GI1788717, Length=412, Percent_Identity=29.6116504854369, Blast_Score=161, Evalue=9e-41,
Organism=Escherichia coli, GI1786222, Length=410, Percent_Identity=28.5365853658537, Blast_Score=153, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI115535051, Length=324, Percent_Identity=30.5555555555556, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI32564160, Length=282, Percent_Identity=29.7872340425532, Blast_Score=98, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24648431, Length=398, Percent_Identity=34.1708542713568, Blast_Score=226, Evalue=2e-59,
Organism=Drosophila melanogaster, GI24585488, Length=404, Percent_Identity=29.7029702970297, Blast_Score=126, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 45751; Mature: 45751

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRPRATNSNGREGAATAHYAAMDTTTSVNRGPLAGLKVLELGQLIAGPFAAKTLADFGA
CCCCCCCCCCCCCCCCHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCC
DVVKIEPPGAGDPLRKWRLLKDGTSVWWQVQSRNKRSLALDLKDPQAQDIVRKLARDADV
CEEEECCCCCCCHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHH
LIENFRPGAMEGWGLGPDELLKLNPRLIMLRISGYGQTGPYRDRPGFGVVAEAMSGLRHL
HHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
TAEPGRVPVRVGVSIGDTLAALHGVIGILLALHHRTAHGVGQVIDVALYEAVFNCMESLL
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PEYSAFGAVRGPAGSALPGIAPSNAYRCKDDGYALIAGNGDSIFKRLMAVIGRDDLGADP
CHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCCC
LLSDNAGRVARVAEIDEAIGQWAAQRTVDEVLAALDKASVPAGRIYTVADIAADPHYQAR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHH
GMLDSVQMADGSTLAVPGITPKLSLTPGGHRRNAPVLGQDTDAVLHELGLTPEQIQGLKD
CCHHHHEECCCCEEECCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHHCCCCC
KGIVSCTATGAQS
CCEEEEECCCCCC
>Mature Secondary Structure
MRRPRATNSNGREGAATAHYAAMDTTTSVNRGPLAGLKVLELGQLIAGPFAAKTLADFGA
CCCCCCCCCCCCCCCCHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCC
DVVKIEPPGAGDPLRKWRLLKDGTSVWWQVQSRNKRSLALDLKDPQAQDIVRKLARDADV
CEEEECCCCCCCHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHH
LIENFRPGAMEGWGLGPDELLKLNPRLIMLRISGYGQTGPYRDRPGFGVVAEAMSGLRHL
HHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
TAEPGRVPVRVGVSIGDTLAALHGVIGILLALHHRTAHGVGQVIDVALYEAVFNCMESLL
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PEYSAFGAVRGPAGSALPGIAPSNAYRCKDDGYALIAGNGDSIFKRLMAVIGRDDLGADP
CHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCCC
LLSDNAGRVARVAEIDEAIGQWAAQRTVDEVLAALDKASVPAGRIYTVADIAADPHYQAR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHH
GMLDSVQMADGSTLAVPGITPKLSLTPGGHRRNAPVLGQDTDAVLHELGLTPEQIQGLKD
CCHHHHEECCCCEEECCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHHCCCCC
KGIVSCTATGAQS
CCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]