| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is rmlA1 [H]
Identifier: 91789858
GI number: 91789858
Start: 4217376
End: 4218293
Strand: Reverse
Name: rmlA1 [H]
Synonym: Bpro_4018
Alternate gene names: 91789858
Gene position: 4218293-4217376 (Counterclockwise)
Preceding gene: 91789859
Following gene: 91789857
Centisome position: 81.12
GC content: 57.95
Gene sequence:
>918_bases ATGACCTCTTCCCCACTCACCACTAGCCACTCACCACTAGCCAGGAAGGGCATCATCCTCGCCGGCGGCTCAGGCACCCG CCTGCACCCGGCCACGCTGGCCATCAGCAAACAGCTGCTCCCGGTGTACGACAAGCCCATGATCTACTACCCGCTCAGCA CTCTCATGCTCGCGGGCATGCGCGACATCCTCGTCATCAGCACCCCGCAAGACACACCGCGTTTTCAGCAACTGCTGGGC GACGGCAGCCAGTGGGGCCTGAACCTGCAGTATGCCGTGCAGCCCAGCCCAGACGGCCTGGCGCAGGCTTTCATCATCGG TGAGCCGTTCATTGGCAACTCGCCCAGTGCACTGGTGCTTGGTGACAATATTTTTTATGGTCATGACTTTCACCAATTGC TGGGCAGCGCCATGGCCAGAACTGAGGGTGCCAGCGTTTTCGCCTACCATGTGCACAACCCGGAGCGCTATGGCGTGGCG GAGTTCGACGCGCGCGGCAAAGTGCTGTCGCTGGAAGAAAAGCCAAAACAACCCAAGTCAAACTACGCCGTAACGGGCCT GTATTTTTACGACAATCAGGTGGTTGACTTGGCCAAAAGCCTGAAGCCATCCCTGCGCGGCGAGCTTGAAATAACTGACC TTAACCGCTTGTATCTTGAGCGCGGCCAACTCGATGTTGAAATCATGGGCCGGGGCTATGCCTGGCTTGACACCGGTACC CACGAATCGTTGCTGGAGGCCGGCCAGTTCATTGCCACCCTGGAAAACCGCCAAGGCCTGAAGGTAGCCTGCCCCGAAGA AATCGCTTATCGCCAGCACTGGATTGATGCCTCCCAGCTGGAAAAGCTTGCACAGCCCCTCGCCAAAAACGGCTATGGGC AGTACCTGCTTCGCATCCTCAAAGAAAAAGTATTTTGA
Upstream 100 bases:
>100_bases TAGAAACGGTGCAAAAGAATATCTGCACTTCATCGGCATTGCGCGTGGCTCACTGGCAGAACTCGAAACGCAGCTCGGCC TTTAAATAACTAAGCCTCTC
Downstream 100 bases:
>100_bases TGAAAGCCACACCCCTCGCCATTCCTGATGTGATCCTGCTTGAACCCCAAGTGTTTGGAGACGCGCGGGGCTTCTTTTTT GAGAGCTTTAATCAGGCAAA
Product: glucose-1-phosphate thymidylyltransferase
Products: NA
Alternate protein names: G1P-TT 1; dTDP-glucose pyrophosphorylase 1; dTDP-glucose synthase 1 [H]
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MTSSPLTTSHSPLARKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGMRDILVISTPQDTPRFQQLLG DGSQWGLNLQYAVQPSPDGLAQAFIIGEPFIGNSPSALVLGDNIFYGHDFHQLLGSAMARTEGASVFAYHVHNPERYGVA EFDARGKVLSLEEKPKQPKSNYAVTGLYFYDNQVVDLAKSLKPSLRGELEITDLNRLYLERGQLDVEIMGRGYAWLDTGT HESLLEAGQFIATLENRQGLKVACPEEIAYRQHWIDASQLEKLAQPLAKNGYGQYLLRILKEKVF
Sequences:
>Translated_305_residues MTSSPLTTSHSPLARKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGMRDILVISTPQDTPRFQQLLG DGSQWGLNLQYAVQPSPDGLAQAFIIGEPFIGNSPSALVLGDNIFYGHDFHQLLGSAMARTEGASVFAYHVHNPERYGVA EFDARGKVLSLEEKPKQPKSNYAVTGLYFYDNQVVDLAKSLKPSLRGELEITDLNRLYLERGQLDVEIMGRGYAWLDTGT HESLLEAGQFIATLENRQGLKVACPEEIAYRQHWIDASQLEKLAQPLAKNGYGQYLLRILKEKVF >Mature_304_residues TSSPLTTSHSPLARKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGMRDILVISTPQDTPRFQQLLGD GSQWGLNLQYAVQPSPDGLAQAFIIGEPFIGNSPSALVLGDNIFYGHDFHQLLGSAMARTEGASVFAYHVHNPERYGVAE FDARGKVLSLEEKPKQPKSNYAVTGLYFYDNQVVDLAKSLKPSLRGELEITDLNRLYLERGQLDVEIMGRGYAWLDTGTH ESLLEAGQFIATLENRQGLKVACPEEIAYRQHWIDASQLEKLAQPLAKNGYGQYLLRILKEKVF
Specific function: Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis [H]
COG id: COG1209
COG function: function code M; dTDP-glucose pyrophosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glucose-1-phosphate thymidylyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1788351, Length=288, Percent_Identity=75.6944444444444, Blast_Score=469, Evalue=1e-133, Organism=Escherichia coli, GI1790224, Length=288, Percent_Identity=65.9722222222222, Blast_Score=407, Evalue=1e-115, Organism=Escherichia coli, GI1787488, Length=296, Percent_Identity=26.0135135135135, Blast_Score=75, Evalue=4e-15, Organism=Caenorhabditis elegans, GI133931050, Length=190, Percent_Identity=25.7894736842105, Blast_Score=76, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6320148, Length=259, Percent_Identity=28.5714285714286, Blast_Score=88, Evalue=2e-18, Organism=Drosophila melanogaster, GI21355443, Length=251, Percent_Identity=25.0996015936255, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24644084, Length=251, Percent_Identity=25.0996015936255, Blast_Score=86, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005907 - InterPro: IPR005835 [H]
Pfam domain/function: PF00483 NTP_transferase [H]
EC number: =2.7.7.24 [H]
Molecular weight: Translated: 33778; Mature: 33647
Theoretical pI: Translated: 6.73; Mature: 6.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSPLTTSHSPLARKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGM CCCCCCCCCCCCHHHCCEEEECCCCCEECHHHHHHHHHHCCCCCCCEEEECHHHHHHHCC RDILVISTPQDTPRFQQLLGDGSQWGLNLQYAVQPSPDGLAQAFIIGEPFIGNSPSALVL CEEEEEECCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEE GDNIFYGHDFHQLLGSAMARTEGASVFAYHVHNPERYGVAEFDARGKVLSLEEKPKQPKS ECCEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCEEECCCCCCCCCC NYAVTGLYFYDNQVVDLAKSLKPSLRGELEITDLNRLYLERGQLDVEIMGRGYAWLDTGT CEEEEEEEEECCHHHHHHHHCCHHHCCCEEEEHHHHHHHHCCCEEEEEECCCEEEEECCC HESLLEAGQFIATLENRQGLKVACPEEIAYRQHWIDASQLEKLAQPLAKNGYGQYLLRIL HHHHHHHHHHEEECCCCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHH KEKVF HHHCC >Mature Secondary Structure TSSPLTTSHSPLARKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGM CCCCCCCCCCCHHHCCEEEECCCCCEECHHHHHHHHHHCCCCCCCEEEECHHHHHHHCC RDILVISTPQDTPRFQQLLGDGSQWGLNLQYAVQPSPDGLAQAFIIGEPFIGNSPSALVL CEEEEEECCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEE GDNIFYGHDFHQLLGSAMARTEGASVFAYHVHNPERYGVAEFDARGKVLSLEEKPKQPKS ECCEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCEEECCCCCCCCCC NYAVTGLYFYDNQVVDLAKSLKPSLRGELEITDLNRLYLERGQLDVEIMGRGYAWLDTGT CEEEEEEEEECCHHHHHHHHCCHHHCCCEEEEHHHHHHHHCCCEEEEEECCCEEEEECCC HESLLEAGQFIATLENRQGLKVACPEEIAYRQHWIDASQLEKLAQPLAKNGYGQYLLRIL HHHHHHHHHHEEECCCCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHH KEKVF HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7517391; 9097040; 9278503; 7517390 [H]