| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789736
Identifier: 91789736
GI number: 91789736
Start: 4087514
End: 4088878
Strand: Reverse
Name: 91789736
Synonym: Bpro_3894
Alternate gene names: NA
Gene position: 4088878-4087514 (Counterclockwise)
Preceding gene: 91789737
Following gene: 91789727
Centisome position: 78.63
GC content: 61.25
Gene sequence:
>1365_bases ATGAGTCCGAAAGCCCATCTCTCCACGATGCCCACGCAACCCTCAGCCCCGCCAGCGTCCGGTTCTTCGGTCTCGCTCCA TGATGCGCGCCCGTTCTTTGAAAAGGCGCTGCAGTTTGGTGTGCAGAACGGCATCATCAACCAGCATAAGCTGGACGCCA TTTGCGAGGATGCGCCCAAAGGCATGGTGCAGATTGCGCGCCACTTTGGCAGCGAATTTTTGCGCCCGGAACTTGAAAAG GCCAGGGACCGCATGGTTAACCTGGTCAGCCTTTACCTGGAAAGCACCAGTGGCGGCGACCTGCGCAAAGCCGCCGAGTC GCTGCGTGACCATTCGTTTTTGTCCCGCTCCAAGGGCGGCTCGGACATGTTGAAGGCCTTGCTGGCCCTGCCCGAGAGCA CCAGCTTTGACACCAATCCGGGCAGTGACAGCCTTGACGGCCAGGCGCCGTCCAGCGTGTTTGCCGCGTGGACGCTCAAA AGCCTGGATGACTATCAGGCTGAACTGGCCAGGCGCAGTCCGGTCAAGCAGCAGAAGGACGCTGCCATCTGGCTGGCCGA ACAGCTGGGGCTGGACGTCGCCGAACTGGAAGAGGCGCACACCCATGCCGAAGCAGTGATTCGTACGGCGCTCCTGGTGT TGTCCGCCACCCAACACGCCGAGATGCCGGATTGGGTTGCCTTTGAAAAAATGGTGGCGGCACTGCGCAAGAGATACGGA CTAGCCAAAACCAGCGCCACAGCACTCGCGAAGAAGGCCGGCGCTGGTGCCGACAAGGGTAGCGCCAGGTCTTTGACCTT GCCCATCGTCCTTCCCCAAAACCTGCCCGATGAATTCAGGGCGGTGGTGGAGCTTGTGCGGCAATCCGTCGTTGCCGATT TACCCCGCATCCTGGACGCTTCCCTGCCGGCCAGGGCGCTTTTTGCCAAGGACAGTGACCACCGGACGCCGCCGCTCTTT GGGCGGTATTTCTGGCTGGAAGACATGGCGAGCGAAATCGACCACCATGACCGTTCTGTCTCCAAAGCCTGGGACAAGGC CACTGGGGGGAACAGCGATGACGGCTCGCTGCTCACGCTGTTTTTATGCGTGGCCGCCGGTGCCCCTCCCAAGACGCTTC TGAGCGAAAAGGCCGCTGCGGCCCTGATCCGCAAGAATCAAAAAGCGGGCGCCAAGCCGGGCTTTGACCCGGCCCTGGCC CATCAATACATCCTGGAGAACGCACCCGCGCAATACCAGGACGACTATGCCCGGTTGTGGACGGACTTTGTTGACGAAGC GCAGCACCTGCTGCAAAGCGATTCGGTGTTTGCGCAGGCAGATGCGCTGGCCCTGCTGCGGCGCGAGTGCAATGTGAAAC AGTGA
Upstream 100 bases:
>100_bases GAAGAAGACGATGGCAAGGTCGAGACGGGTGATACCGACCGCGGCAAGGCCACGCCCGCTGCGCGCGAGTCAGACGAGGA ATCGGCAATCTAAAAGCGGC
Downstream 100 bases:
>100_bases TGGGTGTTGAAGCGATCCTTATCGCTGTCTCGTGGTCTCGCTGTCTCGGTGCCTGAGCGCATCTGCCAGGCCGCCGCCTT AAAGAATCCGGTTAAACCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MSPKAHLSTMPTQPSAPPASGSSVSLHDARPFFEKALQFGVQNGIINQHKLDAICEDAPKGMVQIARHFGSEFLRPELEK ARDRMVNLVSLYLESTSGGDLRKAAESLRDHSFLSRSKGGSDMLKALLALPESTSFDTNPGSDSLDGQAPSSVFAAWTLK SLDDYQAELARRSPVKQQKDAAIWLAEQLGLDVAELEEAHTHAEAVIRTALLVLSATQHAEMPDWVAFEKMVAALRKRYG LAKTSATALAKKAGAGADKGSARSLTLPIVLPQNLPDEFRAVVELVRQSVVADLPRILDASLPARALFAKDSDHRTPPLF GRYFWLEDMASEIDHHDRSVSKAWDKATGGNSDDGSLLTLFLCVAAGAPPKTLLSEKAAAALIRKNQKAGAKPGFDPALA HQYILENAPAQYQDDYARLWTDFVDEAQHLLQSDSVFAQADALALLRRECNVKQ
Sequences:
>Translated_454_residues MSPKAHLSTMPTQPSAPPASGSSVSLHDARPFFEKALQFGVQNGIINQHKLDAICEDAPKGMVQIARHFGSEFLRPELEK ARDRMVNLVSLYLESTSGGDLRKAAESLRDHSFLSRSKGGSDMLKALLALPESTSFDTNPGSDSLDGQAPSSVFAAWTLK SLDDYQAELARRSPVKQQKDAAIWLAEQLGLDVAELEEAHTHAEAVIRTALLVLSATQHAEMPDWVAFEKMVAALRKRYG LAKTSATALAKKAGAGADKGSARSLTLPIVLPQNLPDEFRAVVELVRQSVVADLPRILDASLPARALFAKDSDHRTPPLF GRYFWLEDMASEIDHHDRSVSKAWDKATGGNSDDGSLLTLFLCVAAGAPPKTLLSEKAAAALIRKNQKAGAKPGFDPALA HQYILENAPAQYQDDYARLWTDFVDEAQHLLQSDSVFAQADALALLRRECNVKQ >Mature_453_residues SPKAHLSTMPTQPSAPPASGSSVSLHDARPFFEKALQFGVQNGIINQHKLDAICEDAPKGMVQIARHFGSEFLRPELEKA RDRMVNLVSLYLESTSGGDLRKAAESLRDHSFLSRSKGGSDMLKALLALPESTSFDTNPGSDSLDGQAPSSVFAAWTLKS LDDYQAELARRSPVKQQKDAAIWLAEQLGLDVAELEEAHTHAEAVIRTALLVLSATQHAEMPDWVAFEKMVAALRKRYGL AKTSATALAKKAGAGADKGSARSLTLPIVLPQNLPDEFRAVVELVRQSVVADLPRILDASLPARALFAKDSDHRTPPLFG RYFWLEDMASEIDHHDRSVSKAWDKATGGNSDDGSLLTLFLCVAAGAPPKTLLSEKAAAALIRKNQKAGAKPGFDPALAH QYILENAPAQYQDDYARLWTDFVDEAQHLLQSDSVFAQADALALLRRECNVKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49367; Mature: 49236
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPKAHLSTMPTQPSAPPASGSSVSLHDARPFFEKALQFGVQNGIINQHKLDAICEDAPK CCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCH GMVQIARHFGSEFLRPELEKARDRMVNLVSLYLESTSGGDLRKAAESLRDHSFLSRSKGG HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC SDMLKALLALPESTSFDTNPGSDSLDGQAPSSVFAAWTLKSLDDYQAELARRSPVKQQKD HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH AAIWLAEQLGLDVAELEEAHTHAEAVIRTALLVLSATQHAEMPDWVAFEKMVAALRKRYG HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC LAKTSATALAKKAGAGADKGSARSLTLPIVLPQNLPDEFRAVVELVRQSVVADLPRILDA CHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHC SLPARALFAKDSDHRTPPLFGRYFWLEDMASEIDHHDRSVSKAWDKATGGNSDDGSLLTL CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH FLCVAAGAPPKTLLSEKAAAALIRKNQKAGAKPGFDPALAHQYILENAPAQYQDDYARLW HHHHHCCCCHHHHHHHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH TDFVDEAQHLLQSDSVFAQADALALLRRECNVKQ HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SPKAHLSTMPTQPSAPPASGSSVSLHDARPFFEKALQFGVQNGIINQHKLDAICEDAPK CCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCH GMVQIARHFGSEFLRPELEKARDRMVNLVSLYLESTSGGDLRKAAESLRDHSFLSRSKGG HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC SDMLKALLALPESTSFDTNPGSDSLDGQAPSSVFAAWTLKSLDDYQAELARRSPVKQQKD HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH AAIWLAEQLGLDVAELEEAHTHAEAVIRTALLVLSATQHAEMPDWVAFEKMVAALRKRYG HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC LAKTSATALAKKAGAGADKGSARSLTLPIVLPQNLPDEFRAVVELVRQSVVADLPRILDA CHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHC SLPARALFAKDSDHRTPPLFGRYFWLEDMASEIDHHDRSVSKAWDKATGGNSDDGSLLTL CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH FLCVAAGAPPKTLLSEKAAAALIRKNQKAGAKPGFDPALAHQYILENAPAQYQDDYARLW HHHHHCCCCHHHHHHHHHHHHHHHHCHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH TDFVDEAQHLLQSDSVFAQADALALLRRECNVKQ HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA