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The map label for this gene is yjjV [H]

Identifier: 91789727

GI number: 91789727

Start: 4077828

End: 4078691

Strand: Reverse

Name: yjjV [H]

Synonym: Bpro_3885

Alternate gene names: 91789727

Gene position: 4078691-4077828 (Counterclockwise)

Preceding gene: 91789736

Following gene: 91789726

Centisome position: 78.43

GC content: 64.47

Gene sequence:

>864_bases
ATGACCTTCTGGATTGACACACACTGCCACCTCGATGCCGGGGAGTTCTCGCCAGATGTGGCCGCAGTTCGTGCGCGGGC
TACCGTCAGGCAGGTCGCGCATTGCGTGCTGCCGGCTGTGGCAGTCAGCAACTTCGCGGCCGTGCGCTTGCTGGCGCATG
AGTTTTCGGACAGTTACGCATTGGGCATACATCCGCTTTGCGTGCCCGAAGCACAAGAGGCCGACCTGCTGGCGCTGGAT
GCGGAACTGACCCTCAGAAAGTCCGACCCGCGCCTGGTGGCGGTGGGTGAAATAGGGCTTGACTATTTTGTGCCCGCATT
GACGCAAAGCCCCATGCGCGAGCGCCAGGAATATTTCTACCGCGAGCAGCTCAAGCTGGCGCGCAAGCACGGCTTGCCGG
TCATCCTGCATGTGCGGCGATCGGCCGACAAGCTGCTCAAACATTTGCGTGAGCTGGTGCCCCATCACCCGGAGCACCCG
GAGGACGGCTGGCGTGGCATTGCCCATGCCTTTAACGGCAGCGAACAGCAGGCGATGGAGTTCGTCAAGCTGGGTTTCAA
GCTGGGCTTTGGCGGTGCCGTCACGTTTGAGCCCGCCCGGCAGCTCAGGCACCTGGCCGCCCAGTTGCCGCTGGAGGTGC
TGGTGATGGAAACCGATTCACCCGACATTCCACCGCACTGGCTTTACACCACGGCAGCGCAGCGTGCGGCCGGGCAGGGC
CAGGGCCGCAATGAGCCGGGCGAGTTGCCCCGCATTGCACAGCAAGTGGCGAGTCTGCGCGGCATCTCGGCCGAAGCGTT
GGCCAGCGCCACCAGCGCCAACGCGCTAGAGGCGCTGCCCCGGCTCAAGGCGCTCGTGTCGTGA

Upstream 100 bases:

>100_bases
TGAGCATGCGAAAAAAGCATAGCCTGTACTGGTTTCATTTCTGTGTCAATATCATCTGCACTGATAGCGCGCTTCTCCTT
TTTTCACGCCACCCCCCGCA

Downstream 100 bases:

>100_bases
GCAATGTGGTGAGTAATGTCGTGAGTCATGACGGGAGGACTGCCGTGCTGACCGGCTTGCCGCCGCTCGTCTGCGGCCAG
ACGCGCCTCTTGATCCTAGG

Product: TatD-like protein deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MTFWIDTHCHLDAGEFSPDVAAVRARATVRQVAHCVLPAVAVSNFAAVRLLAHEFSDSYALGIHPLCVPEAQEADLLALD
AELTLRKSDPRLVAVGEIGLDYFVPALTQSPMRERQEYFYREQLKLARKHGLPVILHVRRSADKLLKHLRELVPHHPEHP
EDGWRGIAHAFNGSEQQAMEFVKLGFKLGFGGAVTFEPARQLRHLAAQLPLEVLVMETDSPDIPPHWLYTTAAQRAAGQG
QGRNEPGELPRIAQQVASLRGISAEALASATSANALEALPRLKALVS

Sequences:

>Translated_287_residues
MTFWIDTHCHLDAGEFSPDVAAVRARATVRQVAHCVLPAVAVSNFAAVRLLAHEFSDSYALGIHPLCVPEAQEADLLALD
AELTLRKSDPRLVAVGEIGLDYFVPALTQSPMRERQEYFYREQLKLARKHGLPVILHVRRSADKLLKHLRELVPHHPEHP
EDGWRGIAHAFNGSEQQAMEFVKLGFKLGFGGAVTFEPARQLRHLAAQLPLEVLVMETDSPDIPPHWLYTTAAQRAAGQG
QGRNEPGELPRIAQQVASLRGISAEALASATSANALEALPRLKALVS
>Mature_286_residues
TFWIDTHCHLDAGEFSPDVAAVRARATVRQVAHCVLPAVAVSNFAAVRLLAHEFSDSYALGIHPLCVPEAQEADLLALDA
ELTLRKSDPRLVAVGEIGLDYFVPALTQSPMRERQEYFYREQLKLARKHGLPVILHVRRSADKLLKHLRELVPHHPEHPE
DGWRGIAHAFNGSEQQAMEFVKLGFKLGFGGAVTFEPARQLRHLAAQLPLEVLVMETDSPDIPPHWLYTTAAQRAAGQGQ
GRNEPGELPRIAQQVASLRGISAEALASATSANALEALPRLKALVS

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=288, Percent_Identity=29.5138888888889, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI110349734, Length=288, Percent_Identity=29.1666666666667, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI226061853, Length=295, Percent_Identity=29.1525423728814, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI226061614, Length=286, Percent_Identity=27.2727272727273, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI225903424, Length=249, Percent_Identity=28.5140562248996, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI226061595, Length=236, Percent_Identity=28.8135593220339, Blast_Score=76, Evalue=4e-14,
Organism=Escherichia coli, GI87082439, Length=274, Percent_Identity=39.7810218978102, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787342, Length=277, Percent_Identity=32.129963898917, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI48994985, Length=272, Percent_Identity=29.0441176470588, Blast_Score=89, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71980746, Length=279, Percent_Identity=24.7311827956989, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17559024, Length=232, Percent_Identity=26.2931034482759, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 31547; Mature: 31416

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFWIDTHCHLDAGEFSPDVAAVRARATVRQVAHCVLPAVAVSNFAAVRLLAHEFSDSYA
CEEEEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
LGIHPLCVPEAQEADLLALDAELTLRKSDPRLVAVGEIGLDYFVPALTQSPMRERQEYFY
ECCCCCCCCCCCCCCEEEECCEEEEECCCCCEEEEECCCHHHHHHHHHHCHHHHHHHHHH
REQLKLARKHGLPVILHVRRSADKLLKHLRELVPHHPEHPEDGWRGIAHAFNGSEQQAME
HHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHH
FVKLGFKLGFGGAVTFEPARQLRHLAAQLPLEVLVMETDSPDIPPHWLYTTAAQRAAGQG
HHHHHHHCCCCCEEEEHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCC
QGRNEPGELPRIAQQVASLRGISAEALASATSANALEALPRLKALVS
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TFWIDTHCHLDAGEFSPDVAAVRARATVRQVAHCVLPAVAVSNFAAVRLLAHEFSDSYA
EEEEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
LGIHPLCVPEAQEADLLALDAELTLRKSDPRLVAVGEIGLDYFVPALTQSPMRERQEYFY
ECCCCCCCCCCCCCCEEEECCEEEEECCCCCEEEEECCCHHHHHHHHHHCHHHHHHHHHH
REQLKLARKHGLPVILHVRRSADKLLKHLRELVPHHPEHPEDGWRGIAHAFNGSEQQAME
HHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHH
FVKLGFKLGFGGAVTFEPARQLRHLAAQLPLEVLVMETDSPDIPPHWLYTTAAQRAAGQG
HHHHHHHCCCCCEEEEHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCC
QGRNEPGELPRIAQQVASLRGISAEALASATSANALEALPRLKALVS
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]