| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789703
Identifier: 91789703
GI number: 91789703
Start: 4051570
End: 4052682
Strand: Reverse
Name: 91789703
Synonym: Bpro_3859
Alternate gene names: NA
Gene position: 4052682-4051570 (Counterclockwise)
Preceding gene: 91789704
Following gene: 91789697
Centisome position: 77.93
GC content: 64.87
Gene sequence:
>1113_bases ATGGACATATCAGCAATCACTCTGTTCCTGGCGGGTGATGTCATGTGCGGCCGCGGCATCGACCAAATCCTGCCTCATCC AGTCCACCCGCAATTGTTCGAGTCCTTCGTCAAGTCCGCGCGCGATTACGTCGAGCTGGCGGAAGGCCAAAGTGGCCCCA TCCCTCGTCCGGTGGGCTGGGACTATGTCTGGGGCGATGCCCTGGCCGAGCTGAACCGCCTGCAGCCGCACGCGCGCATC GTCAACCTGGAGACCGCCGTCACGGCGCGAGGGGAGCCCTGGCCGGCCAAGGGCATTCACTACCGCATGCATCCCGCCAA TGTGCCCTGTCTGACGGCTGCCGGCCTGGACTGTTGTGTACTGGCCAATAACCACGTCCTGGATTGGGGCTACGACGGCC TGAGCGACACCCTGGCCACACTCCGTCGTGCCGGGCTGCGTACCACCGGCGCGGGACTCAACCAGGCCGAGGCTGAGGCG CCGGCCTGCATCGAGGTGCCCGGCAAAGGGCGGGTCCTCGTGCTTGCCATGGCCAGCGACAGCAGCGGCGTCCCCCCTTC CTGGGAGGCCACGGCAGAGCGCGCGGGCGTCTCGCGTGCACCCGACTTCTCGGCACAGGCGGCGCAGGCGCTGGCCGCCA GAGCGGCTGCAGCGCGGCGAGAGGGTGACATCGTGGTTGTGTCGCTTCATTGGGGCGGCAACTGGGGGTTTCAGGTGCCC GCCGAGCAGCGCAGCTTTGCCAGGCGTCTGATTGATTCTGGTGCCGTAGATGTCATCTTCGGCCACTCCTCCCACCATGT GAAGGGCATCGAGGTGTACTGCGAACGCCTGATCCTGTATGGCTGCGGCGACCTTCTGAACGATTATGAAGGGATTGGCG GTTACGACAGCTACTGCCCGGGTCTGGGGCTGATGTATTTTGCGAGTCTCGATGCGCAGACACGTCGCCTCGTGAATCTG ACCATGGTTCCCATACGGGTCCAGCGTTTTCAGATCCAGCGGGCGACCGACGACGAGACGGCGTGGCTGCTGGCGACTTT GAGTCGGGAGGGGCAGCGATTCGGGACAGGCGTGGAGCAGCGCAACGCAGATCTGCTGTTACGCTGGACCTAG
Upstream 100 bases:
>100_bases TTGCATGACGGGGAAGAATGTGCTGGCGGATGGCGGGGCCTATCCAGGAACGTACTGACGGGCAGTTGACGCGCGCTGCG CGTCGGCGGACCATGGGTGG
Downstream 100 bases:
>100_bases CCGGTGCCGAGCCGCCTCAAACCGGCGACGCGTCCCCTCGGGGGCCGGGCGCAGCCCTTGGGGGCCATAAAAACCTGGCC CGCAGCGTCGCCGTCACTTT
Product: putative capsule biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 370; Mature: 370
Protein sequence:
>370_residues MDISAITLFLAGDVMCGRGIDQILPHPVHPQLFESFVKSARDYVELAEGQSGPIPRPVGWDYVWGDALAELNRLQPHARI VNLETAVTARGEPWPAKGIHYRMHPANVPCLTAAGLDCCVLANNHVLDWGYDGLSDTLATLRRAGLRTTGAGLNQAEAEA PACIEVPGKGRVLVLAMASDSSGVPPSWEATAERAGVSRAPDFSAQAAQALAARAAAARREGDIVVVSLHWGGNWGFQVP AEQRSFARRLIDSGAVDVIFGHSSHHVKGIEVYCERLILYGCGDLLNDYEGIGGYDSYCPGLGLMYFASLDAQTRRLVNL TMVPIRVQRFQIQRATDDETAWLLATLSREGQRFGTGVEQRNADLLLRWT
Sequences:
>Translated_370_residues MDISAITLFLAGDVMCGRGIDQILPHPVHPQLFESFVKSARDYVELAEGQSGPIPRPVGWDYVWGDALAELNRLQPHARI VNLETAVTARGEPWPAKGIHYRMHPANVPCLTAAGLDCCVLANNHVLDWGYDGLSDTLATLRRAGLRTTGAGLNQAEAEA PACIEVPGKGRVLVLAMASDSSGVPPSWEATAERAGVSRAPDFSAQAAQALAARAAAARREGDIVVVSLHWGGNWGFQVP AEQRSFARRLIDSGAVDVIFGHSSHHVKGIEVYCERLILYGCGDLLNDYEGIGGYDSYCPGLGLMYFASLDAQTRRLVNL TMVPIRVQRFQIQRATDDETAWLLATLSREGQRFGTGVEQRNADLLLRWT >Mature_370_residues MDISAITLFLAGDVMCGRGIDQILPHPVHPQLFESFVKSARDYVELAEGQSGPIPRPVGWDYVWGDALAELNRLQPHARI VNLETAVTARGEPWPAKGIHYRMHPANVPCLTAAGLDCCVLANNHVLDWGYDGLSDTLATLRRAGLRTTGAGLNQAEAEA PACIEVPGKGRVLVLAMASDSSGVPPSWEATAERAGVSRAPDFSAQAAQALAARAAAARREGDIVVVSLHWGGNWGFQVP AEQRSFARRLIDSGAVDVIFGHSSHHVKGIEVYCERLILYGCGDLLNDYEGIGGYDSYCPGLGLMYFASLDAQTRRLVNL TMVPIRVQRFQIQRATDDETAWLLATLSREGQRFGTGVEQRNADLLLRWT
Specific function: Could be involved in the biosynthesis of a cell wall component (Potential) [H]
COG id: COG2843
COG function: function code M; Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CapA family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019079 [H]
Pfam domain/function: PF09587 PGA_cap [H]
EC number: NA
Molecular weight: Translated: 40199; Mature: 40199
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDISAITLFLAGDVMCGRGIDQILPHPVHPQLFESFVKSARDYVELAEGQSGPIPRPVGW CCCCEEEEEEECCCHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC DYVWGDALAELNRLQPHARIVNLETAVTARGEPWPAKGIHYRMHPANVPCLTAAGLDCCV CCHHHHHHHHHHHCCCCCEEEEEEHEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEE LANNHVLDWGYDGLSDTLATLRRAGLRTTGAGLNQAEAEAPACIEVPGKGRVLVLAMASD EECCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHCCCCCEEEECCCCCEEEEEEECC SSGVPPSWEATAERAGVSRAPDFSAQAAQALAARAAAARREGDIVVVSLHWGGNWGFQVP CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEECC AEQRSFARRLIDSGAVDVIFGHSSHHVKGIEVYCERLILYGCGDLLNDYEGIGGYDSYCP HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC GLGLMYFASLDAQTRRLVNLTMVPIRVQRFQIQRATDDETAWLLATLSREGQRFGTGVEQ CCHHHHHHHCCHHHHHEEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHCCHHHCCCCCC RNADLLLRWT CCCCEEEEEC >Mature Secondary Structure MDISAITLFLAGDVMCGRGIDQILPHPVHPQLFESFVKSARDYVELAEGQSGPIPRPVGW CCCCEEEEEEECCCHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC DYVWGDALAELNRLQPHARIVNLETAVTARGEPWPAKGIHYRMHPANVPCLTAAGLDCCV CCHHHHHHHHHHHCCCCCEEEEEEHEEEECCCCCCCCCEEEEECCCCCCEEECCCCCEEE LANNHVLDWGYDGLSDTLATLRRAGLRTTGAGLNQAEAEAPACIEVPGKGRVLVLAMASD EECCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHCCCCCEEEECCCCCEEEEEEECC SSGVPPSWEATAERAGVSRAPDFSAQAAQALAARAAAARREGDIVVVSLHWGGNWGFQVP CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEECC AEQRSFARRLIDSGAVDVIFGHSSHHVKGIEVYCERLILYGCGDLLNDYEGIGGYDSYCP HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC GLGLMYFASLDAQTRRLVNLTMVPIRVQRFQIQRATDDETAWLLATLSREGQRFGTGVEQ CCHHHHHHHCCHHHHHEEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHCCHHHCCCCCC RNADLLLRWT CCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]