| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is mmgC [H]
Identifier: 91789689
GI number: 91789689
Start: 4035804
End: 4036985
Strand: Direct
Name: mmgC [H]
Synonym: Bpro_3845
Alternate gene names: 91789689
Gene position: 4035804-4036985 (Clockwise)
Preceding gene: 91789688
Following gene: 91789690
Centisome position: 77.61
GC content: 60.24
Gene sequence:
>1182_bases ATGGATTTAGCTTTCACCCCTGAAGAGCAGGCATTTCGCGAAGAAATACGCGCCTGGGTTCATGCCAGCCTGCCCCAAGA CATTTCGCACAAGGTGCACAACGCCTTGCGCCTGTCGCGTGATGACATGCAGCGCTGGGCCAAAATCCTGGGCAAAAAAG GCTGGCTGGGCCACGGCTGGCCCAAGGAATTTGGCGGCCCGGGCTGGAACGCCGTGCAAAAACACCTGTTTGAAGAAGAA TGCGCGCTGGCTGGCGCGCCGCGTGTTGTGCCATTCGGCCCCGTGATGGTGGCCCCCGTCATCATGGCCTTCGGCAATGC CGAGCAGCAAAAGCGCTTTCTGCCGGGCATCGCCAGCGGCGACGTCTGGTGGAGCCAGGGCTACAGCGAGCCAGGCTCCG GCTCCGACCTTGCATCGGTCAAATGCCGGGCCGAACGGCAGGGCGACAAATACATCGTCAATGGCCAGAAAACCTGGACC ACGCTGGGCCAGTACGGCGAATGGATTTTCTGCCTGGTGCGCACCAGCACAGAGGGCAAACCGCAAACCGGCATCTCCTT TTTGCTGATCGACATGAAGTCGCCCGGCGTCACGGTGCGGCCCATCAAGCTGCTCGATGGCGAAAGCGAAGTCAACGAGG TCTGGTTCGACAACGTGGAAGTGCCCGCGGAAAATCTGATCGGCGAGGAAAACAAGGGCTGGACCTACGCCAAGCACCTG CTCAGCCACGAGCGCACCAACATTGCCGACGTCAATCGCGCCAAGCGCGAACTGGAACGACTCAAGCGCATCGCCAAAAC GGAAAACGTTTATGACGACATGCGGTTTGGCGACGAGATCGCCAAGCTCGAAGTGGATGTGGTGGCGCTGGAAATGCTGG TGCTGCGCGTGCTGTCCGCTGAAAAATCCGGCAAGAACTCGCTGGACATCGCCGGGCTGCTCAAGATCCGGGGCAGCGAG ATCCAGCAGCGCTACAGCGAACTGATGATGCTGGCCGCCGGCCCGTTCAGCCTGCCTTTCATCGAGGAGGCCATGGAAGC GGGCTGGCAGGGCAACTTCCCGGGCGGCGTGCTGGCCAATGCGCCGCTGGCGTCCACCTATTTCAACATGCGCAAAACCA CGATTTACGGCGGCTCCAACGAGGTCCAGCGAAATATCGTTTCACAAGTCGTTTTGGGTTAA
Upstream 100 bases:
>100_bases GACGCCCACGATCATTCGCCAAATTAGGCCGGTTTGTCCCCGTTTTGACAGGTCAAAAAGCACATTCGTGCTAAAACCGG GGAAATCGACGGAGACATGT
Downstream 100 bases:
>100_bases TGCTGGTTTAAAGGAAAGCATCATGGATTTCGATTTCACCGATGACCAGGAACAGCTTCGCGACGCGGTTCGCAAATGGG TGGACAAGGGCTACGACTTC
Product: acyl-CoA dehydrogenase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MDLAFTPEEQAFREEIRAWVHASLPQDISHKVHNALRLSRDDMQRWAKILGKKGWLGHGWPKEFGGPGWNAVQKHLFEEE CALAGAPRVVPFGPVMVAPVIMAFGNAEQQKRFLPGIASGDVWWSQGYSEPGSGSDLASVKCRAERQGDKYIVNGQKTWT TLGQYGEWIFCLVRTSTEGKPQTGISFLLIDMKSPGVTVRPIKLLDGESEVNEVWFDNVEVPAENLIGEENKGWTYAKHL LSHERTNIADVNRAKRELERLKRIAKTENVYDDMRFGDEIAKLEVDVVALEMLVLRVLSAEKSGKNSLDIAGLLKIRGSE IQQRYSELMMLAAGPFSLPFIEEAMEAGWQGNFPGGVLANAPLASTYFNMRKTTIYGGSNEVQRNIVSQVVLG
Sequences:
>Translated_393_residues MDLAFTPEEQAFREEIRAWVHASLPQDISHKVHNALRLSRDDMQRWAKILGKKGWLGHGWPKEFGGPGWNAVQKHLFEEE CALAGAPRVVPFGPVMVAPVIMAFGNAEQQKRFLPGIASGDVWWSQGYSEPGSGSDLASVKCRAERQGDKYIVNGQKTWT TLGQYGEWIFCLVRTSTEGKPQTGISFLLIDMKSPGVTVRPIKLLDGESEVNEVWFDNVEVPAENLIGEENKGWTYAKHL LSHERTNIADVNRAKRELERLKRIAKTENVYDDMRFGDEIAKLEVDVVALEMLVLRVLSAEKSGKNSLDIAGLLKIRGSE IQQRYSELMMLAAGPFSLPFIEEAMEAGWQGNFPGGVLANAPLASTYFNMRKTTIYGGSNEVQRNIVSQVVLG >Mature_393_residues MDLAFTPEEQAFREEIRAWVHASLPQDISHKVHNALRLSRDDMQRWAKILGKKGWLGHGWPKEFGGPGWNAVQKHLFEEE CALAGAPRVVPFGPVMVAPVIMAFGNAEQQKRFLPGIASGDVWWSQGYSEPGSGSDLASVKCRAERQGDKYIVNGQKTWT TLGQYGEWIFCLVRTSTEGKPQTGISFLLIDMKSPGVTVRPIKLLDGESEVNEVWFDNVEVPAENLIGEENKGWTYAKHL LSHERTNIADVNRAKRELERLKRIAKTENVYDDMRFGDEIAKLEVDVVALEMLVLRVLSAEKSGKNSLDIAGLLKIRGSE IQQRYSELMMLAAGPFSLPFIEEAMEAGWQGNFPGGVLANAPLASTYFNMRKTTIYGGSNEVQRNIVSQVVLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the acyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI4501857, Length=403, Percent_Identity=26.302729528536, Blast_Score=120, Evalue=3e-27, Organism=Homo sapiens, GI226958414, Length=235, Percent_Identity=30.6382978723404, Blast_Score=103, Evalue=4e-22, Organism=Homo sapiens, GI187960098, Length=344, Percent_Identity=25, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI4557231, Length=344, Percent_Identity=25, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI226958412, Length=213, Percent_Identity=30.0469483568075, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI4501859, Length=396, Percent_Identity=24.4949494949495, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI4557233, Length=367, Percent_Identity=26.7029972752044, Blast_Score=95, Evalue=1e-19, Organism=Homo sapiens, GI7656849, Length=356, Percent_Identity=25.8426966292135, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI21361497, Length=254, Percent_Identity=27.9527559055118, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI4557235, Length=213, Percent_Identity=30.0469483568075, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI76496475, Length=213, Percent_Identity=30.0469483568075, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI38505218, Length=311, Percent_Identity=24.4372990353698, Blast_Score=73, Evalue=6e-13, Organism=Escherichia coli, GI87081958, Length=307, Percent_Identity=24.4299674267101, Blast_Score=93, Evalue=4e-20, Organism=Escherichia coli, GI1786223, Length=354, Percent_Identity=24.2937853107345, Blast_Score=81, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17569725, Length=348, Percent_Identity=25, Blast_Score=116, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17534899, Length=349, Percent_Identity=26.3610315186246, Blast_Score=114, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17570075, Length=421, Percent_Identity=24.2280285035629, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17538396, Length=251, Percent_Identity=30.6772908366534, Blast_Score=107, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17508101, Length=350, Percent_Identity=26.5714285714286, Blast_Score=105, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17505929, Length=348, Percent_Identity=26.7241379310345, Blast_Score=104, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17551932, Length=205, Percent_Identity=31.219512195122, Blast_Score=101, Evalue=6e-22, Organism=Caenorhabditis elegans, GI71985184, Length=208, Percent_Identity=30.7692307692308, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71985192, Length=208, Percent_Identity=30.7692307692308, Blast_Score=89, Evalue=5e-18, Organism=Caenorhabditis elegans, GI71990804, Length=199, Percent_Identity=30.1507537688442, Blast_Score=88, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17506239, Length=369, Percent_Identity=24.1192411924119, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI32563615, Length=198, Percent_Identity=31.3131313131313, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71982178, Length=225, Percent_Identity=26.6666666666667, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI21355753, Length=213, Percent_Identity=32.3943661971831, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI24666513, Length=289, Percent_Identity=28.0276816608997, Blast_Score=102, Evalue=4e-22, Organism=Drosophila melanogaster, GI281363737, Length=233, Percent_Identity=29.6137339055794, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI24660351, Length=344, Percent_Identity=25.8720930232558, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI21356377, Length=377, Percent_Identity=25.9946949602122, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI24646207, Length=415, Percent_Identity=24.0963855421687, Blast_Score=79, Evalue=8e-15, Organism=Drosophila melanogaster, GI19920834, Length=232, Percent_Identity=29.3103448275862, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006089 - InterPro: IPR006092 - InterPro: IPR006090 - InterPro: IPR006091 - InterPro: IPR009075 - InterPro: IPR013786 - InterPro: IPR009100 [H]
Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]
EC number: NA
Molecular weight: Translated: 43834; Mature: 43834
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLAFTPEEQAFREEIRAWVHASLPQDISHKVHNALRLSRDDMQRWAKILGKKGWLGHGW CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC PKEFGGPGWNAVQKHLFEEECALAGAPRVVPFGPVMVAPVIMAFGNAEQQKRFLPGIASG CHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCC DVWWSQGYSEPGSGSDLASVKCRAERQGDKYIVNGQKTWTTLGQYGEWIFCLVRTSTEGK CCHHHCCCCCCCCCCCHHHHEEHHHCCCCEEEECCCHHHHHHHHCCCEEEEEEEECCCCC PQTGISFLLIDMKSPGVTVRPIKLLDGESEVNEVWFDNVEVPAENLIGEENKGWTYAKHL CCCCCEEEEEEECCCCCEEEEEEEECCCCHHHHHHCCCCCCCHHHHCCCCCCCHHHHHHH LSHERTNIADVNRAKRELERLKRIAKTENVYDDMRFGDEIAKLEVDVVALEMLVLRVLSA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH EKSGKNSLDIAGLLKIRGSEIQQRYSELMMLAAGPFSLPFIEEAMEAGWQGNFPGGVLAN CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCC APLASTYFNMRKTTIYGGSNEVQRNIVSQVVLG CCHHHHHHHHHEEEEECCCHHHHHHHHHHHHCC >Mature Secondary Structure MDLAFTPEEQAFREEIRAWVHASLPQDISHKVHNALRLSRDDMQRWAKILGKKGWLGHGW CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC PKEFGGPGWNAVQKHLFEEECALAGAPRVVPFGPVMVAPVIMAFGNAEQQKRFLPGIASG CHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCC DVWWSQGYSEPGSGSDLASVKCRAERQGDKYIVNGQKTWTTLGQYGEWIFCLVRTSTEGK CCHHHCCCCCCCCCCCHHHHEEHHHCCCCEEEECCCHHHHHHHHCCCEEEEEEEECCCCC PQTGISFLLIDMKSPGVTVRPIKLLDGESEVNEVWFDNVEVPAENLIGEENKGWTYAKHL CCCCCEEEEEEECCCCCEEEEEEEECCCCHHHHHHCCCCCCCHHHHCCCCCCCHHHHHHH LSHERTNIADVNRAKRELERLKRIAKTENVYDDMRFGDEIAKLEVDVVALEMLVLRVLSA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH EKSGKNSLDIAGLLKIRGSEIQQRYSELMMLAAGPFSLPFIEEAMEAGWQGNFPGGVLAN CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCC APLASTYFNMRKTTIYGGSNEVQRNIVSQVVLG CCHHHHHHHHHEEEEECCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8759838; 8969508; 9384377 [H]