Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is yurO [H]

Identifier: 91789659

GI number: 91789659

Start: 4003975

End: 4005297

Strand: Direct

Name: yurO [H]

Synonym: Bpro_3815

Alternate gene names: 91789659

Gene position: 4003975-4005297 (Clockwise)

Preceding gene: 91789658

Following gene: 91789660

Centisome position: 77.0

GC content: 60.39

Gene sequence:

>1323_bases
ATGCCTTTGCCCAGATTCCTTCCTTCCGCAGTTTTCGTCCAGCGCTTCGTGCCTGCTCTGGCTGGCGCGCTGGCTTGCGC
CGCCCTGGCTGGCCCTGTGCTGGCCCAGACCTCGCAGCAAACCATCACCATGTGGAGTCATTGGCCCGACGAGCAGTCCA
AGCGCGGCTTTGTCGAAGAGCGCGTGAAAAAGTTCGAGGCCGCCACACCGCAATGCAAAGTCAATCTTCAATTCGTCCAG
AAGTCCGACCTCTATGCGTCGGTCAAGACCTCGGTGCGAACGGGGCAGGCACCCGACATCTTCTGGCTTGAGCCCGACGA
AATTGCCTTCGCGAAGAGCGGTTACCTGGAGCCGCTGGACGGCCACATCAACCTCAACAACCTGGAAGACTGGGCACGCC
AGTCCTGGAGCCATAACGGCAAGGTCTACGGACTGCCGGTGGAGGCCTACACGGTGGAGCTGTACTACAACAGGGACCTG
ATGAAGAAAGTTGGCGTGACGCCCCCGCCTGGCATGCAGATGTCGCAGGCGCAATTCACGGACCTGGTGAAGAAGACCGC
CGCCGCAGGCATCACACCGGTGGCCTCAGGCGTGGGGGACCGCCCCTACCCTGGCGCCTATCTGCTTCAGGAGATGCTCC
TGCGCAAACTGGGGCTTGACGACTATCGCGCGTTGCTGACGGGGAAGCTGTCGTTCACTGACCCGCGTGTCATCGAAACC
ATGAACTGGATCAAGGAGCTGGTGGATGCCGGCGCCTACCCGAAGAGCTTTTCGACGCTCAAGCTCGGCGAGTCGCACTA
CTACTTTCACACCAATCCGGGCGCCATGATGTTCCCGATCGCCAGCTGGTACACCGGCCGCGCTTTCGTTTCAGCGGAAA
AAGGGGGGCAGCCGCAAGGATTCCCACTCGGCCTGATGAAGTATCCGGCAGTCAACGGTGCGAAATGCCCGGAATGCAAG
ACACTCGCCGTCGGTGGCAGCTACGTGATGTACTCGCGCAGCAAGAATAAAGAGTGCGCGGGCAAGCTCCTCAACTCGAT
CGCCACTGTGGAAAATGGCAACAAGTGGATGGAGGAAGTGCTGCTGCAGACCGGCGTGCGCACGGACCCTTCGCGTATAC
AGAGCATTCACGCGCAGTACTTCAAGGACCTGCAGGACCGCAGCATCGGCGCAAAATTCTTCATCGGCACACCACTGCAC
TACATGAGCGGCAAGTGCGGGGACACCTTTTCGCAGGTACTCAATCGCGCCTTTCCCGCCGGTCTGATCAGCGTCAAGGA
CGCGGCTGGCCAGATGGACGCAGCTTGCAAAGCGGCTTCCTGA

Upstream 100 bases:

>100_bases
ACGCGCAATTCACCATGCCGGGTTATCCGGGCCGCTAGGCGATCGGCGATCGGCGCACCACAACCAAACGAAACCACCCA
CCAACAACGAGGAGACAACC

Downstream 100 bases:

>100_bases
CGTTTTTCCGAGATGCCGTCCATGTCCAATTCCATTTCGAACGCCTTGCCCGCCCCAAAACCCGGTTGGCGCCCGAAACT
CGGCGCGTTGCTGGCGCCAC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MPLPRFLPSAVFVQRFVPALAGALACAALAGPVLAQTSQQTITMWSHWPDEQSKRGFVEERVKKFEAATPQCKVNLQFVQ
KSDLYASVKTSVRTGQAPDIFWLEPDEIAFAKSGYLEPLDGHINLNNLEDWARQSWSHNGKVYGLPVEAYTVELYYNRDL
MKKVGVTPPPGMQMSQAQFTDLVKKTAAAGITPVASGVGDRPYPGAYLLQEMLLRKLGLDDYRALLTGKLSFTDPRVIET
MNWIKELVDAGAYPKSFSTLKLGESHYYFHTNPGAMMFPIASWYTGRAFVSAEKGGQPQGFPLGLMKYPAVNGAKCPECK
TLAVGGSYVMYSRSKNKECAGKLLNSIATVENGNKWMEEVLLQTGVRTDPSRIQSIHAQYFKDLQDRSIGAKFFIGTPLH
YMSGKCGDTFSQVLNRAFPAGLISVKDAAGQMDAACKAAS

Sequences:

>Translated_440_residues
MPLPRFLPSAVFVQRFVPALAGALACAALAGPVLAQTSQQTITMWSHWPDEQSKRGFVEERVKKFEAATPQCKVNLQFVQ
KSDLYASVKTSVRTGQAPDIFWLEPDEIAFAKSGYLEPLDGHINLNNLEDWARQSWSHNGKVYGLPVEAYTVELYYNRDL
MKKVGVTPPPGMQMSQAQFTDLVKKTAAAGITPVASGVGDRPYPGAYLLQEMLLRKLGLDDYRALLTGKLSFTDPRVIET
MNWIKELVDAGAYPKSFSTLKLGESHYYFHTNPGAMMFPIASWYTGRAFVSAEKGGQPQGFPLGLMKYPAVNGAKCPECK
TLAVGGSYVMYSRSKNKECAGKLLNSIATVENGNKWMEEVLLQTGVRTDPSRIQSIHAQYFKDLQDRSIGAKFFIGTPLH
YMSGKCGDTFSQVLNRAFPAGLISVKDAAGQMDAACKAAS
>Mature_439_residues
PLPRFLPSAVFVQRFVPALAGALACAALAGPVLAQTSQQTITMWSHWPDEQSKRGFVEERVKKFEAATPQCKVNLQFVQK
SDLYASVKTSVRTGQAPDIFWLEPDEIAFAKSGYLEPLDGHINLNNLEDWARQSWSHNGKVYGLPVEAYTVELYYNRDLM
KKVGVTPPPGMQMSQAQFTDLVKKTAAAGITPVASGVGDRPYPGAYLLQEMLLRKLGLDDYRALLTGKLSFTDPRVIETM
NWIKELVDAGAYPKSFSTLKLGESHYYFHTNPGAMMFPIASWYTGRAFVSAEKGGQPQGFPLGLMKYPAVNGAKCPECKT
LAVGGSYVMYSRSKNKECAGKLLNSIATVENGNKWMEEVLLQTGVRTDPSRIQSIHAQYFKDLQDRSIGAKFFIGTPLHY
MSGKCGDTFSQVLNRAFPAGLISVKDAAGQMDAACKAAS

Specific function: Probably part of the binding-protein-dependent transport system yurMNO [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48401; Mature: 48270

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLPRFLPSAVFVQRFVPALAGALACAALAGPVLAQTSQQTITMWSHWPDEQSKRGFVEE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCHHHH
RVKKFEAATPQCKVNLQFVQKSDLYASVKTSVRTGQAPDIFWLEPDEIAFAKSGYLEPLD
HHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCC
GHINLNNLEDWARQSWSHNGKVYGLPVEAYTVELYYNRDLMKKVGVTPPPGMQMSQAQFT
CCEECCCHHHHHHHHHCCCCEEEEEEEEEEEEEEEECHHHHHHCCCCCCCCCCCHHHHHH
DLVKKTAAAGITPVASGVGDRPYPGAYLLQEMLLRKLGLDDYRALLTGKLSFTDPRVIET
HHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHH
MNWIKELVDAGAYPKSFSTLKLGESHYYFHTNPGAMMFPIASWYTGRAFVSAEKGGQPQG
HHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCCEEEEHHHCCCCCEEEEECCCCCCCC
FPLGLMKYPAVNGAKCPECKTLAVGGSYVMYSRSKNKECAGKLLNSIATVENGNKWMEEV
CCCCCEECCCCCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHH
LLQTGVRTDPSRIQSIHAQYFKDLQDRSIGAKFFIGTPLHYMSGKCGDTFSQVLNRAFPA
HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCHHHHHHHHHHCCC
GLISVKDAAGQMDAACKAAS
CEEEEHHHCCCHHHHHCCCC
>Mature Secondary Structure 
PLPRFLPSAVFVQRFVPALAGALACAALAGPVLAQTSQQTITMWSHWPDEQSKRGFVEE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCHHHH
RVKKFEAATPQCKVNLQFVQKSDLYASVKTSVRTGQAPDIFWLEPDEIAFAKSGYLEPLD
HHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCC
GHINLNNLEDWARQSWSHNGKVYGLPVEAYTVELYYNRDLMKKVGVTPPPGMQMSQAQFT
CCEECCCHHHHHHHHHCCCCEEEEEEEEEEEEEEEECHHHHHHCCCCCCCCCCCHHHHHH
DLVKKTAAAGITPVASGVGDRPYPGAYLLQEMLLRKLGLDDYRALLTGKLSFTDPRVIET
HHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHH
MNWIKELVDAGAYPKSFSTLKLGESHYYFHTNPGAMMFPIASWYTGRAFVSAEKGGQPQG
HHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCCEEEEHHHCCCCCEEEEECCCCCCCC
FPLGLMKYPAVNGAKCPECKTLAVGGSYVMYSRSKNKECAGKLLNSIATVENGNKWMEEV
CCCCCEECCCCCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHH
LLQTGVRTDPSRIQSIHAQYFKDLQDRSIGAKFFIGTPLHYMSGKCGDTFSQVLNRAFPA
HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCHHHHHHHHHHCCC
GLISVKDAAGQMDAACKAAS
CEEEEHHHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]