| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ilvD [H]
Identifier: 91789654
GI number: 91789654
Start: 3998497
End: 4000251
Strand: Direct
Name: ilvD [H]
Synonym: Bpro_3810
Alternate gene names: 91789654
Gene position: 3998497-4000251 (Clockwise)
Preceding gene: 91789653
Following gene: 91789655
Centisome position: 76.89
GC content: 63.25
Gene sequence:
>1755_bases ATGACCATGAAATCAAGCGACACATCCAAAAACCATTCCGAAGAAACCGGTCTGAGAAAGGGCCTGACCAGCTACGGCGA CAAGGGCTTCTCGCTCTTTCTTCGAAAGGCTTTCATCAAGGGGGCGGGCTATACCGATACGGCGCTGGACCGGCCTGTGA TCGGCATTGCCAATACCGGCAGCGCATACAACCCATGCCATGGCAATGCCCCCCAGCTCATTGAGGCCGTCAAGCGTGGT GTCATGCTGGCAGGCGGGCTGCCCATGGATTTCCCCACGATTTCCATCCACGAGAGCTTCTCGGCGCCGACCAGCATGTA CCTGCGCAACCTGATGTCGATGGATACGGAGGAGATGGTCCGGGCCCAACCGATGGATGCGGTGGTGCTGATTGGCGGCT GCGACAAGACGGTTCCGGCGCAGCTGATGGGTGCGGCATCGGCGGGCATTCCGGCCATCCAGTTGATCACGGGATCCATG CTGACCGGCTCCCACCGGGGCGAGCGTGTCGGTGCGTGTACCGACTGCCGCCGCTATTGGGGCAAGTTCCGCGCCGGCGA GATCGATGCCGAGGAAACAGCGGATGTCAACAACCAGCTGGTGGCCAGCGTGGGCACCTGCTCGGTGATGGGAACTGCCA GCACCATGGCCTGCATTGCCGAGGCCCTGGGCATGACGGTTCCGGGCGGCGCATCGCCTCCGGCCGTCACGGCCGACCGC ATCCGGATCGCGGAGGAGACCGGTGCGCGGGCCGTGCAAATGGCACGCGATGGACTGACCATCGACAAAATCCTGACACC CGCGGCTTTCGAAAATGCCATGCGGGTGCTGCTGTCCATCGGCGGGTCCACCAACGGCATCGTGCACCTGGCAGCGATTG CGGGTCGCGTCGGCCTGGAAATTGACATGCAGGCGCTGGATCGCATGGGCAGGGAAACGCCGGTCCTGCTGGACCTCAAA CCCTCCGGCCAGCACTACATGGAAGACTTCCACAAGGCAGGCGGCATGGCCACGCTGTTCAGGGCGCTCAAGCCCCTGCT GCGCCTGGATGCATTGACGGTGACGGGACGCACCCTGGGTGAGGAAATTGAACTGGTCGGACCAGGTTTTGCGCAGGATG TGGTTCGCTCCATCGACAACCCGATCTACCCGCAGGGAGGCATCGCCGTGCTGCGCGGCAACCTGGCGCCAGGCTGCGCC ATCATCAAGCAATCTGCGGCCGACCCCAAGCTGATGGAGCATGAGGGACGCGCCGTGGTGTTCGACAACGCGGAGGATCT GGTCAACCGCATCGACCGCGACGACCTGGATGTCATGGCAGACGACGTGCTGGTGCTCAAGAACATCGGCCCCAAGGGGG CGCCGGGCATGCCCGAGGCTGGCTACATTCCCATTCCGCTCAAACTGGCACGTGCCGGCGTAAAGGACATGGTCAGGATT TCGGACGGCCGGATGAGCGGCACCGCCTTCGGCACCATCGTCCTGCATGTGACGCCGGAATCCGCCGTGGGTGGGCCACT GTCGCAGGTGCGCAGTGGAGACCACATTCGGCTCAGCGTGCGCAATCGTGAGATCAGCCTGCTGGTATCCGATGAAGAAC TCGCCCGGCGGATGCGCGAGAACGTGGTGACCGAGCCGACCGCCGACCGGGGCTATCGCAGGCTGTTCCTGCAGACCGTC ACGCAAGCCGACAAGGGCGTCGATTTTGACTTTCTGAGGGCCGCAAAGATCACCGGAAAAACGCCTCGATCCTGA
Upstream 100 bases:
>100_bases CCTGCGCAGCGAAGTGTCTCGCTGGGAAAAGGTCATCAAGGAAGCCAACATCAAGGCAGACGACTGAGCTGTCGGCCACC GGATATTTTCAAACACCCTC
Downstream 100 bases:
>100_bases CATGCAGGCTATCGTCAAAATTGGGACCTTTGCCGGAGAGCTTCAGCAGACCATTGACCGGGAATTCCAATGCCATGGGC CTGAGGATATTGCGCGGGAT
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD [H]
Number of amino acids: Translated: 584; Mature: 583
Protein sequence:
>584_residues MTMKSSDTSKNHSEETGLRKGLTSYGDKGFSLFLRKAFIKGAGYTDTALDRPVIGIANTGSAYNPCHGNAPQLIEAVKRG VMLAGGLPMDFPTISIHESFSAPTSMYLRNLMSMDTEEMVRAQPMDAVVLIGGCDKTVPAQLMGAASAGIPAIQLITGSM LTGSHRGERVGACTDCRRYWGKFRAGEIDAEETADVNNQLVASVGTCSVMGTASTMACIAEALGMTVPGGASPPAVTADR IRIAEETGARAVQMARDGLTIDKILTPAAFENAMRVLLSIGGSTNGIVHLAAIAGRVGLEIDMQALDRMGRETPVLLDLK PSGQHYMEDFHKAGGMATLFRALKPLLRLDALTVTGRTLGEEIELVGPGFAQDVVRSIDNPIYPQGGIAVLRGNLAPGCA IIKQSAADPKLMEHEGRAVVFDNAEDLVNRIDRDDLDVMADDVLVLKNIGPKGAPGMPEAGYIPIPLKLARAGVKDMVRI SDGRMSGTAFGTIVLHVTPESAVGGPLSQVRSGDHIRLSVRNREISLLVSDEELARRMRENVVTEPTADRGYRRLFLQTV TQADKGVDFDFLRAAKITGKTPRS
Sequences:
>Translated_584_residues MTMKSSDTSKNHSEETGLRKGLTSYGDKGFSLFLRKAFIKGAGYTDTALDRPVIGIANTGSAYNPCHGNAPQLIEAVKRG VMLAGGLPMDFPTISIHESFSAPTSMYLRNLMSMDTEEMVRAQPMDAVVLIGGCDKTVPAQLMGAASAGIPAIQLITGSM LTGSHRGERVGACTDCRRYWGKFRAGEIDAEETADVNNQLVASVGTCSVMGTASTMACIAEALGMTVPGGASPPAVTADR IRIAEETGARAVQMARDGLTIDKILTPAAFENAMRVLLSIGGSTNGIVHLAAIAGRVGLEIDMQALDRMGRETPVLLDLK PSGQHYMEDFHKAGGMATLFRALKPLLRLDALTVTGRTLGEEIELVGPGFAQDVVRSIDNPIYPQGGIAVLRGNLAPGCA IIKQSAADPKLMEHEGRAVVFDNAEDLVNRIDRDDLDVMADDVLVLKNIGPKGAPGMPEAGYIPIPLKLARAGVKDMVRI SDGRMSGTAFGTIVLHVTPESAVGGPLSQVRSGDHIRLSVRNREISLLVSDEELARRMRENVVTEPTADRGYRRLFLQTV TQADKGVDFDFLRAAKITGKTPRS >Mature_583_residues TMKSSDTSKNHSEETGLRKGLTSYGDKGFSLFLRKAFIKGAGYTDTALDRPVIGIANTGSAYNPCHGNAPQLIEAVKRGV MLAGGLPMDFPTISIHESFSAPTSMYLRNLMSMDTEEMVRAQPMDAVVLIGGCDKTVPAQLMGAASAGIPAIQLITGSML TGSHRGERVGACTDCRRYWGKFRAGEIDAEETADVNNQLVASVGTCSVMGTASTMACIAEALGMTVPGGASPPAVTADRI RIAEETGARAVQMARDGLTIDKILTPAAFENAMRVLLSIGGSTNGIVHLAAIAGRVGLEIDMQALDRMGRETPVLLDLKP SGQHYMEDFHKAGGMATLFRALKPLLRLDALTVTGRTLGEEIELVGPGFAQDVVRSIDNPIYPQGGIAVLRGNLAPGCAI IKQSAADPKLMEHEGRAVVFDNAEDLVNRIDRDDLDVMADDVLVLKNIGPKGAPGMPEAGYIPIPLKLARAGVKDMVRIS DGRMSGTAFGTIVLHVTPESAVGGPLSQVRSGDHIRLSVRNREISLLVSDEELARRMRENVVTEPTADRGYRRLFLQTVT QADKGVDFDFLRAAKITGKTPRS
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=598, Percent_Identity=31.1036789297659, Blast_Score=237, Evalue=1e-63, Organism=Escherichia coli, GI2367371, Length=467, Percent_Identity=30.406852248394, Blast_Score=168, Evalue=8e-43, Organism=Escherichia coli, GI1786464, Length=498, Percent_Identity=29.718875502008, Blast_Score=166, Evalue=3e-42, Organism=Escherichia coli, GI1788157, Length=459, Percent_Identity=31.1546840958606, Blast_Score=163, Evalue=3e-41, Organism=Saccharomyces cerevisiae, GI6322476, Length=549, Percent_Identity=30.6010928961749, Blast_Score=266, Evalue=5e-72,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 62227; Mature: 62096
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS00886 ILVD_EDD_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMKSSDTSKNHSEETGLRKGLTSYGDKGFSLFLRKAFIKGAGYTDTALDRPVIGIANTG CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHCCCCEEEEECCC SAYNPCHGNAPQLIEAVKRGVMLAGGLPMDFPTISIHESFSAPTSMYLRNLMSMDTEEMV CCCCCCCCCHHHHHHHHHCCEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHCCCHHHHH RAQPMDAVVLIGGCDKTVPAQLMGAASAGIPAIQLITGSMLTGSHRGERVGACTDCRRYW HCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHCCCCCCCCCCCHHHHHHHH GKFRAGEIDAEETADVNNQLVASVGTCSVMGTASTMACIAEALGMTVPGGASPPAVTADR CCCCCCCCCCHHHCCCCCHHHHHCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH IRIAEETGARAVQMARDGLTIDKILTPAAFENAMRVLLSIGGSTNGIVHLAAIAGRVGLE EEEHHHHCHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCE IDMQALDRMGRETPVLLDLKPSGQHYMEDFHKAGGMATLFRALKPLLRLDALTVTGRTLG EEHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCHHCC EEIELVGPGFAQDVVRSIDNPIYPQGGIAVLRGNLAPGCAIIKQSAADPKLMEHEGRAVV CCEEEECCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHCCCCCCHHHHCCCCEEE FDNAEDLVNRIDRDDLDVMADDVLVLKNIGPKGAPGMPEAGYIPIPLKLARAGVKDMVRI ECCHHHHHHHCCCCCHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHEE SDGRMSGTAFGTIVLHVTPESAVGGPLSQVRSGDHIRLSVRNREISLLVSDEELARRMRE CCCCCCCEEEEEEEEEECCCHHCCCCHHHHCCCCEEEEEEECCEEEEEECCHHHHHHHHH NVVTEPTADRGYRRLFLQTVTQADKGVDFDFLRAAKITGKTPRS HCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure TMKSSDTSKNHSEETGLRKGLTSYGDKGFSLFLRKAFIKGAGYTDTALDRPVIGIANTG CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHCCCCEEEEECCC SAYNPCHGNAPQLIEAVKRGVMLAGGLPMDFPTISIHESFSAPTSMYLRNLMSMDTEEMV CCCCCCCCCHHHHHHHHHCCEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHCCCHHHHH RAQPMDAVVLIGGCDKTVPAQLMGAASAGIPAIQLITGSMLTGSHRGERVGACTDCRRYW HCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHCCCCCCCCCCCHHHHHHHH GKFRAGEIDAEETADVNNQLVASVGTCSVMGTASTMACIAEALGMTVPGGASPPAVTADR CCCCCCCCCCHHHCCCCCHHHHHCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH IRIAEETGARAVQMARDGLTIDKILTPAAFENAMRVLLSIGGSTNGIVHLAAIAGRVGLE EEEHHHHCHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCE IDMQALDRMGRETPVLLDLKPSGQHYMEDFHKAGGMATLFRALKPLLRLDALTVTGRTLG EEHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCHHCC EEIELVGPGFAQDVVRSIDNPIYPQGGIAVLRGNLAPGCAIIKQSAADPKLMEHEGRAVV CCEEEECCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHCCCCCCHHHHCCCCEEE FDNAEDLVNRIDRDDLDVMADDVLVLKNIGPKGAPGMPEAGYIPIPLKLARAGVKDMVRI ECCHHHHHHHCCCCCHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHEE SDGRMSGTAFGTIVLHVTPESAVGGPLSQVRSGDHIRLSVRNREISLLVSDEELARRMRE CCCCCCCEEEEEEEEEECCCHHCCCCHHHHCCCCEEEEEEECCEEEEEECCHHHHHHHHH NVVTEPTADRGYRRLFLQTVTQADKGVDFDFLRAAKITGKTPRS HCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA