| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is trxB [H]
Identifier: 91789645
GI number: 91789645
Start: 3988596
End: 3989582
Strand: Direct
Name: trxB [H]
Synonym: Bpro_3801
Alternate gene names: 91789645
Gene position: 3988596-3989582 (Clockwise)
Preceding gene: 91789636
Following gene: 91789646
Centisome position: 76.7
GC content: 60.49
Gene sequence:
>987_bases ATGACTCTACCTGACTTCCAACACTTTCCCAATCAGTTTTTCACCATGAAACATTCCAAAGTCCTCATCCTCGGTTCAGG CCCTGCAGGTTATACCGCGGCGGTGTATGCAGCGCGCGCCAATCTCGACCCGGTACTGATCACCGGAATTGCGCAAGGGG GCCAACTCATGACCACCACCGACGTGGACAACTGGCCGGCCGACGCGCAGGGCGTGCAGGGGCCGGACCTGATGCAGCGC TTTCTCGAACATGCCGAGCGCTTCAAGACCGAGATCATCTTCGACCACATCAACCAGGTCGACCTCAGCAAGCGTCCTTT CACGCTGACCGGTGACAGCGGCACCTACACCTGCGACACGCTGATCATCGCCACCGGTGCGTCGGCCAAATACCTCGGGC TTGAATCCGAATCTGCGTTCATGGGTCGCGGCGTTTCCGGCTGCGCCACGTGCGATGGCTTCTTCTACCGCAACCAGGAC GTCTGCGTGGTGGGCGGCGGCAATACGGCCGTGGAAGAGGCGTTGTACCTGTCCAACATTGCCAGCAAGGTCACGCTGGT GCATCGCCGCGACAAATTCAAGGCCGAGGCCATCCTGATCGACAAGCTCCACGAAAAAGTGGCAGCGGGCAAGATCGAGC TTCGCTTGCACCATACGCTGGACCAGGTGCTCGGAGACGCTTCTGGCGTGACCGGCGTGCGCCTGAAAAGCACCCTGCAT GACACGGCGCAAGACCTGGCGCTCAAGGGTTGCTTCATCGCCATCGGCCACCAGCCCAACACGGAGATTTTTGCCGGGCA GCTGGAAATGAAAGACGGCTACATCATCACCAAAACCGGTTTGCAGGGTTTTGCCACCATGACCAGCGTGCCGGGCGTCT TTGCCGCCGGCGATGTGCAGGACCATGTGTACCGCCAGGCCATCACCAGCGCCGGGACCGGTTGCATGGCTGCGCTGGAT GCCCAGCGCTTCCTGGAACAAAGCTGA
Upstream 100 bases:
>100_bases ACCTTGCGGCGACGACAAGTCGCGCGAGTTCTTACAATGGCTTTTATCGTGAGAAAAACAAATACCGCCAAGCTTTTACC TGCTGCAGCATTTGTTCGGC
Downstream 100 bases:
>100_bases TACAGGGCAGCTGATTAAAAGCAGTTGATTCAGGGCTGCCGGGTTGCGGTCAGGCCACACCATAGCCCCGCTCATGCTCA TGCTCATGGCCCGCCATTGC
Product: thioredoxin reductase
Products: NA
Alternate protein names: TRXR [H]
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MTLPDFQHFPNQFFTMKHSKVLILGSGPAGYTAAVYAARANLDPVLITGIAQGGQLMTTTDVDNWPADAQGVQGPDLMQR FLEHAERFKTEIIFDHINQVDLSKRPFTLTGDSGTYTCDTLIIATGASAKYLGLESESAFMGRGVSGCATCDGFFYRNQD VCVVGGGNTAVEEALYLSNIASKVTLVHRRDKFKAEAILIDKLHEKVAAGKIELRLHHTLDQVLGDASGVTGVRLKSTLH DTAQDLALKGCFIAIGHQPNTEIFAGQLEMKDGYIITKTGLQGFATMTSVPGVFAAGDVQDHVYRQAITSAGTGCMAALD AQRFLEQS
Sequences:
>Translated_328_residues MTLPDFQHFPNQFFTMKHSKVLILGSGPAGYTAAVYAARANLDPVLITGIAQGGQLMTTTDVDNWPADAQGVQGPDLMQR FLEHAERFKTEIIFDHINQVDLSKRPFTLTGDSGTYTCDTLIIATGASAKYLGLESESAFMGRGVSGCATCDGFFYRNQD VCVVGGGNTAVEEALYLSNIASKVTLVHRRDKFKAEAILIDKLHEKVAAGKIELRLHHTLDQVLGDASGVTGVRLKSTLH DTAQDLALKGCFIAIGHQPNTEIFAGQLEMKDGYIITKTGLQGFATMTSVPGVFAAGDVQDHVYRQAITSAGTGCMAALD AQRFLEQS >Mature_327_residues TLPDFQHFPNQFFTMKHSKVLILGSGPAGYTAAVYAARANLDPVLITGIAQGGQLMTTTDVDNWPADAQGVQGPDLMQRF LEHAERFKTEIIFDHINQVDLSKRPFTLTGDSGTYTCDTLIIATGASAKYLGLESESAFMGRGVSGCATCDGFFYRNQDV CVVGGGNTAVEEALYLSNIASKVTLVHRRDKFKAEAILIDKLHEKVAAGKIELRLHHTLDQVLGDASGVTGVRLKSTLHD TAQDLALKGCFIAIGHQPNTEIFAGQLEMKDGYIITKTGLQGFATMTSVPGVFAAGDVQDHVYRQAITSAGTGCMAALDA QRFLEQS
Specific function: Unknown
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787114, Length=313, Percent_Identity=69.6485623003195, Blast_Score=454, Evalue=1e-129, Organism=Escherichia coli, GI87081763, Length=319, Percent_Identity=30.7210031347962, Blast_Score=123, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6320560, Length=322, Percent_Identity=45.9627329192547, Blast_Score=270, Evalue=3e-73, Organism=Saccharomyces cerevisiae, GI6321898, Length=322, Percent_Identity=44.0993788819876, Blast_Score=263, Evalue=2e-71,
Paralogues:
None
Copy number: 808 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR008255 - InterPro: IPR001327 - InterPro: IPR000103 - InterPro: IPR005982 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.8.1.9 [H]
Molecular weight: Translated: 35311; Mature: 35179
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: PS00573 PYRIDINE_REDOX_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPDFQHFPNQFFTMKHSKVLILGSGPAGYTAAVYAARANLDPVLITGIAQGGQLMTTT CCCCCHHHCCCHHEEEECCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEC DVDNWPADAQGVQGPDLMQRFLEHAERFKTEIIFDHINQVDLSKRPFTLTGDSGTYTCDT CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEE LIIATGASAKYLGLESESAFMGRGVSGCATCDGFFYRNQDVCVVGGGNTAVEEALYLSNI EEEEECCCCEEEECCCCCHHHCCCCCCCEECCCEEEECCCEEEECCCCHHHHHHHHHHHH ASKVTLVHRRDKFKAEAILIDKLHEKVAAGKIELRLHHTLDQVLGDASGVTGVRLKSTLH HHHEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHCCCCCCCCEEEHHHHH DTAQDLALKGCFIAIGHQPNTEIFAGQLEMKDGYIITKTGLQGFATMTSVPGVFAAGDVQ HHHHHHHHCCEEEEECCCCCCCEEEEEEEECCCEEEEECCCCHHHHHHCCCCCEEECCHH DHVYRQAITSAGTGCMAALDAQRFLEQS HHHHHHHHHHCCCCHHHHHHHHHHHHCC >Mature Secondary Structure TLPDFQHFPNQFFTMKHSKVLILGSGPAGYTAAVYAARANLDPVLITGIAQGGQLMTTT CCCCHHHCCCHHEEEECCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEC DVDNWPADAQGVQGPDLMQRFLEHAERFKTEIIFDHINQVDLSKRPFTLTGDSGTYTCDT CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEE LIIATGASAKYLGLESESAFMGRGVSGCATCDGFFYRNQDVCVVGGGNTAVEEALYLSNI EEEEECCCCEEEECCCCCHHHCCCCCCCEECCCEEEECCCEEEECCCCHHHHHHHHHHHH ASKVTLVHRRDKFKAEAILIDKLHEKVAAGKIELRLHHTLDQVLGDASGVTGVRLKSTLH HHHEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHCCCCCCCCEEEHHHHH DTAQDLALKGCFIAIGHQPNTEIFAGQLEMKDGYIITKTGLQGFATMTSVPGVFAAGDVQ HHHHHHHHCCEEEEECCCCCCCEEEEEEEECCCEEEEECCCCHHHHHHCCCCCEEECCHH DHVYRQAITSAGTGCMAALDAQRFLEQS HHHHHHHHHHCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]