| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789620
Identifier: 91789620
GI number: 91789620
Start: 3965953
End: 3966564
Strand: Direct
Name: 91789620
Synonym: Bpro_3775
Alternate gene names: NA
Gene position: 3965953-3966564 (Clockwise)
Preceding gene: 91789619
Following gene: 91789621
Centisome position: 76.26
GC content: 65.2
Gene sequence:
>612_bases ATGGCGCGTTCAATCAATCTCCTCGTTATTCACTGCGCGGCAACGCCGAGCGGTAAACCCCTCCAGCAAGGCAAGCCGGG CCAGCCCGGTTACCTCAATGCCCCCCAGGTCATCAACGCCTGGCACGCGGCACGCGGCTTCAAGCGCGACCCGGCTGCAT GCCGGGCTTTCAATTCCCACCTGCCGAGCATCGGCTACCACTACGTCATCGACCTGACCGGCGAGGTCTGGACAGGCCGC GCCCACAGCGAGGTCGGCGCGCACGCGCTGAACTACAACGCCAACAGCCTGGGCATCTGCCTGGTCGGCGGAGCAGAGCG CGAAGGCCGCTACACGCCCAAGCAGTGGGAGTCGCTGCAGAAGGTGGTGTCCATGCTCTGCAACCAGTACGTGCTGCCCA CCCGCCCGCCACAGCGCAACTGGCTGGGCGGCGCGAACTGGGCCATACACGGCGGCGTTTGCGGGCACCGCGACCTCAGC CCCGACAAAGACGGCAACGGCCTGGTGGAGGCCTTTGAGTGGCTCAAAACCTGCCCCGGCTTCAACGTGAGCGACTGGCT CAGCACGGCCATGACGCCTGATCCCAAGAACGTTTTCAAGGAGACCGTATGA
Upstream 100 bases:
>100_bases GCCGTAGTCTCTTTTGATGCTCTGGCGCGGGCATCGCTCCCGCGTCTCTTTCTAACGCAAGTTAATACCGCATTCGGCGG GCCATCGGCAATATCGCCGC
Downstream 100 bases:
>100_bases GATCACTTGGCCTTGCCGTTGCCGCAATGGCAGCAATTGCCGGCGCGGGCTTAGGTAGCCACGTGGTACTGGCCGGCGAT GCACCTGGGCTTTCGCAGTC
Product: negative regulator of AmpC, AmpD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 203; Mature: 202
Protein sequence:
>203_residues MARSINLLVIHCAATPSGKPLQQGKPGQPGYLNAPQVINAWHAARGFKRDPAACRAFNSHLPSIGYHYVIDLTGEVWTGR AHSEVGAHALNYNANSLGICLVGGAEREGRYTPKQWESLQKVVSMLCNQYVLPTRPPQRNWLGGANWAIHGGVCGHRDLS PDKDGNGLVEAFEWLKTCPGFNVSDWLSTAMTPDPKNVFKETV
Sequences:
>Translated_203_residues MARSINLLVIHCAATPSGKPLQQGKPGQPGYLNAPQVINAWHAARGFKRDPAACRAFNSHLPSIGYHYVIDLTGEVWTGR AHSEVGAHALNYNANSLGICLVGGAEREGRYTPKQWESLQKVVSMLCNQYVLPTRPPQRNWLGGANWAIHGGVCGHRDLS PDKDGNGLVEAFEWLKTCPGFNVSDWLSTAMTPDPKNVFKETV >Mature_202_residues ARSINLLVIHCAATPSGKPLQQGKPGQPGYLNAPQVINAWHAARGFKRDPAACRAFNSHLPSIGYHYVIDLTGEVWTGRA HSEVGAHALNYNANSLGICLVGGAEREGRYTPKQWESLQKVVSMLCNQYVLPTRPPQRNWLGGANWAIHGGVCGHRDLSP DKDGNGLVEAFEWLKTCPGFNVSDWLSTAMTPDPKNVFKETV
Specific function: Unknown
COG id: COG3023
COG function: function code V; Negative regulator of beta-lactamase expression
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To phage T3 and T7 N-acetylmuramoyl-L-alanine amidases [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002502 - InterPro: IPR018247 - InterPro: IPR015510 [H]
Pfam domain/function: PF01510 Amidase_2 [H]
EC number: NA
Molecular weight: Translated: 22185; Mature: 22054
Theoretical pI: Translated: 8.59; Mature: 8.59
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARSINLLVIHCAATPSGKPLQQGKPGQPGYLNAPQVINAWHAARGFKRDPAACRAFNSH CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHC LPSIGYHYVIDLTGEVWTGRAHSEVGAHALNYNANSLGICLVGGAEREGRYTPKQWESLQ CCCCCEEEEEEECCCEECCCCHHHHCCEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHH KVVSMLCNQYVLPTRPPQRNWLGGANWAIHGGVCGHRDLSPDKDGNGLVEAFEWLKTCPG HHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC FNVSDWLSTAMTPDPKNVFKETV CCHHHHHHHHCCCCHHHHHHHCC >Mature Secondary Structure ARSINLLVIHCAATPSGKPLQQGKPGQPGYLNAPQVINAWHAARGFKRDPAACRAFNSH CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHC LPSIGYHYVIDLTGEVWTGRAHSEVGAHALNYNANSLGICLVGGAEREGRYTPKQWESLQ CCCCCEEEEEEECCCEECCCCHHHHCCEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHH KVVSMLCNQYVLPTRPPQRNWLGGANWAIHGGVCGHRDLSPDKDGNGLVEAFEWLKTCPG HHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC FNVSDWLSTAMTPDPKNVFKETV CCHHHHHHHHCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]