| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789586
Identifier: 91789586
GI number: 91789586
Start: 3945886
End: 3947346
Strand: Reverse
Name: 91789586
Synonym: Bpro_3741
Alternate gene names: NA
Gene position: 3947346-3945886 (Counterclockwise)
Preceding gene: 91789587
Following gene: 91789585
Centisome position: 75.91
GC content: 67.01
Gene sequence:
>1461_bases ATGCCCGTCAGCTTCAACGCTATTCCCATTTCGCTGCGCACGCCTGGCCAGTACATCGAGTTTGACTCCAGCCGTGCCCA GCAGGGCCTGCCGGTGCAGCCGCACAAGATCATGGTGTTTGGCCAGCGCTTGGCCACCGGCCTGGTAGTTGCCGGCGTGC CTACCCGGATCACCAGCGCGGCCCAGGCCGAGGCCGCGTTTGGCCGGGGCTCGATGCTCTCGCACATGTTCCAGCGGCTG AAGCTGGCGAACGCCTACACCGAGAGCTGGGCCTGCGCGTCTGATGACAACGGCGCGGGTGTGGCGGCCACGGGCACCAT TGTGGCCAGCGGCGCGCCGACCGAGAGCGGCACGCTGAACCTGTACATTGGCGGGCGCCAGGTGCAGGTGGCTGTTGCTG CCGGGCAAACGGCTGCGCAGGTGGCTACGGCCATCCAGGCGGCCGTGGCGGCCAGCACGGACCTGGCTGTAACCGGCGCT GTGGCTGTGGCCACCGTGACGCTGACGGCCCGCCACAAGGGCGAGTGCGGCAACTTCATCGACATTCGGCCCAACTACTA CTTCGGCGAGCGCACGCCCAAGGGCCTGGTCATCACCATCACGGCGATGACTGGCGGCACCGGCAACCCTGATGCGGCCA CGCCCATCGCCGCGATTGGCGCGGAGCAGTACCAGACGGTCATCATGCCGTGGACTGACGCGGCCAACCTGGTGAAGCTG GAGACCGAACTGGCCGCGCGCTTTGGCCCGCTGGTGATGAAGGAAGGCCAGGCCTTTGCGGCCGCCAGCGGCACGCACGC CAGCATTGACACGCTGGTGGCCGCGCGCAACAGCCCGCACGTCAGCATCATGGGCAGCGGCAAGAGCCCGAACCCGCCCT ACGAATGGGCGGCCGTGCTGGGCGCTGTGGATGCCTTTGAGCCTGACCCGGCCCGCCCGCGCCAGACGCTGGTGCTGACC GGCCTGATGCCGCCCGCAGAGCAGGACCGCTTCACGCAGACCGAGCGCAACATTCACCTGACGGATGGCGCTGCCACCTT CATCGTGGACACCGGTGGCCGCTGTCTGATTGAGCGGCTGACCACGACTTACAAAACCAACAGCTTCGGTGTGCCGGACA TTGCGTACCTGGACATCGAGACGATGCGCACGATTGCCTACCTGCGGTTCAGCGTGCGCAGCCGGATTGGCCTGCGCTTC CCGCGCCACAAGCTGGCGAACGACGGCACCCGGTTTGGCGCTGGCCAGGCCATCGTGACGCCGAAGATCATCCGCGCCGA GCTGCTGGCCCTGTTCCGCGAGTGGGAGCTGGCCGGCCTGGCTGAGAACTTCGACCAGTTCAACACGGACCTGATCGTGG AGCGCAACGGCAGCGACCCGAACCGCATCGACGCGATCATTCCGCCCGACGTGATCAACCAGCTGCGCGTCTTCGCTGGC CAGATTCAGTTCCGCCTGTAA
Upstream 100 bases:
>100_bases CACCTACTGGATACGCCGCCTGAATGACGGCGACGTGAGCGAGGGCGTTGCCCCCGCGCAAGCTGCCGCCAAACCTGCTT CAAAGAAGGAGTAATCCAAA
Downstream 100 bases:
>100_bases CAACCCCTAAATACCAGGAGTAAATGTATGAGTGGAATGAGACTAGGAAAGGCCTTCATCAAGGCCAACGGCGAGCTGCT CGAAACGCTGCCCGGCGCAA
Product: bacteriophage Mu tail sheath
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 486; Mature: 485
Protein sequence:
>486_residues MPVSFNAIPISLRTPGQYIEFDSSRAQQGLPVQPHKIMVFGQRLATGLVVAGVPTRITSAAQAEAAFGRGSMLSHMFQRL KLANAYTESWACASDDNGAGVAATGTIVASGAPTESGTLNLYIGGRQVQVAVAAGQTAAQVATAIQAAVAASTDLAVTGA VAVATVTLTARHKGECGNFIDIRPNYYFGERTPKGLVITITAMTGGTGNPDAATPIAAIGAEQYQTVIMPWTDAANLVKL ETELAARFGPLVMKEGQAFAAASGTHASIDTLVAARNSPHVSIMGSGKSPNPPYEWAAVLGAVDAFEPDPARPRQTLVLT GLMPPAEQDRFTQTERNIHLTDGAATFIVDTGGRCLIERLTTTYKTNSFGVPDIAYLDIETMRTIAYLRFSVRSRIGLRF PRHKLANDGTRFGAGQAIVTPKIIRAELLALFREWELAGLAENFDQFNTDLIVERNGSDPNRIDAIIPPDVINQLRVFAG QIQFRL
Sequences:
>Translated_486_residues MPVSFNAIPISLRTPGQYIEFDSSRAQQGLPVQPHKIMVFGQRLATGLVVAGVPTRITSAAQAEAAFGRGSMLSHMFQRL KLANAYTESWACASDDNGAGVAATGTIVASGAPTESGTLNLYIGGRQVQVAVAAGQTAAQVATAIQAAVAASTDLAVTGA VAVATVTLTARHKGECGNFIDIRPNYYFGERTPKGLVITITAMTGGTGNPDAATPIAAIGAEQYQTVIMPWTDAANLVKL ETELAARFGPLVMKEGQAFAAASGTHASIDTLVAARNSPHVSIMGSGKSPNPPYEWAAVLGAVDAFEPDPARPRQTLVLT GLMPPAEQDRFTQTERNIHLTDGAATFIVDTGGRCLIERLTTTYKTNSFGVPDIAYLDIETMRTIAYLRFSVRSRIGLRF PRHKLANDGTRFGAGQAIVTPKIIRAELLALFREWELAGLAENFDQFNTDLIVERNGSDPNRIDAIIPPDVINQLRVFAG QIQFRL >Mature_485_residues PVSFNAIPISLRTPGQYIEFDSSRAQQGLPVQPHKIMVFGQRLATGLVVAGVPTRITSAAQAEAAFGRGSMLSHMFQRLK LANAYTESWACASDDNGAGVAATGTIVASGAPTESGTLNLYIGGRQVQVAVAAGQTAAQVATAIQAAVAASTDLAVTGAV AVATVTLTARHKGECGNFIDIRPNYYFGERTPKGLVITITAMTGGTGNPDAATPIAAIGAEQYQTVIMPWTDAANLVKLE TELAARFGPLVMKEGQAFAAASGTHASIDTLVAARNSPHVSIMGSGKSPNPPYEWAAVLGAVDAFEPDPARPRQTLVLTG LMPPAEQDRFTQTERNIHLTDGAATFIVDTGGRCLIERLTTTYKTNSFGVPDIAYLDIETMRTIAYLRFSVRSRIGLRFP RHKLANDGTRFGAGQAIVTPKIIRAELLALFREWELAGLAENFDQFNTDLIVERNGSDPNRIDAIIPPDVINQLRVFAGQ IQFRL
Specific function: Major component of the tail [H]
COG id: COG4386
COG function: function code R; Mu-like prophage tail sheath protein gpL
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To phage Mu protein L [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007067 [H]
Pfam domain/function: PF04984 Phage_sheath_1 [H]
EC number: NA
Molecular weight: Translated: 51754; Mature: 51622
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVSFNAIPISLRTPGQYIEFDSSRAQQGLPVQPHKIMVFGQRLATGLVVAGVPTRITSA CCCCCCEEEEEEECCCCEEEECCCHHCCCCCCCCCEEEEEECHHHCCEEEECCCHHHHHH AQAEAAFGRGSMLSHMFQRLKLANAYTESWACASDDNGAGVAATGTIVASGAPTESGTLN HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECEEEECCCCCCCCEEE LYIGGRQVQVAVAAGQTAAQVATAIQAAVAASTDLAVTGAVAVATVTLTARHKGECGNFI EEECCEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECEEEEEEEEEEECCCCCCCCEE DIRPNYYFGERTPKGLVITITAMTGGTGNPDAATPIAAIGAEQYQTVIMPWTDAANLVKL ECCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCEEEE ETELAARFGPLVMKEGQAFAAASGTHASIDTLVAARNSPHVSIMGSGKSPNPPYEWAAVL HHHHHHHHCCEEEECCCEEEECCCCCCCHHHHEEECCCCEEEEEECCCCCCCCHHHHHHH GAVDAFEPDPARPRQTLVLTGLMPPAEQDRFTQTERNIHLTDGAATFIVDTGGRCLIERL HHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCEEEEEECCCHHHHHHH TTTYKTNSFGVPDIAYLDIETMRTIAYLRFSVRSRIGLRFPRHKLANDGTRFGAGQAIVT HHHEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEC PKIIRAELLALFREWELAGLAENFDQFNTDLIVERNGSDPNRIDAIIPPDVINQLRVFAG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHH QIQFRL EEEEEC >Mature Secondary Structure PVSFNAIPISLRTPGQYIEFDSSRAQQGLPVQPHKIMVFGQRLATGLVVAGVPTRITSA CCCCCEEEEEEECCCCEEEECCCHHCCCCCCCCCEEEEEECHHHCCEEEECCCHHHHHH AQAEAAFGRGSMLSHMFQRLKLANAYTESWACASDDNGAGVAATGTIVASGAPTESGTLN HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECEEEECCCCCCCCEEE LYIGGRQVQVAVAAGQTAAQVATAIQAAVAASTDLAVTGAVAVATVTLTARHKGECGNFI EEECCEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECEEEEEEEEEEECCCCCCCCEE DIRPNYYFGERTPKGLVITITAMTGGTGNPDAATPIAAIGAEQYQTVIMPWTDAANLVKL ECCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCEEEE ETELAARFGPLVMKEGQAFAAASGTHASIDTLVAARNSPHVSIMGSGKSPNPPYEWAAVL HHHHHHHHCCEEEECCCEEEECCCCCCCHHHHEEECCCCEEEEEECCCCCCCCHHHHHHH GAVDAFEPDPARPRQTLVLTGLMPPAEQDRFTQTERNIHLTDGAATFIVDTGGRCLIERL HHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCEEEEEECCCHHHHHHH TTTYKTNSFGVPDIAYLDIETMRTIAYLRFSVRSRIGLRFPRHKLANDGTRFGAGQAIVT HHHEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEC PKIIRAELLALFREWELAGLAENFDQFNTDLIVERNGSDPNRIDAIIPPDVINQLRVFAG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHH QIQFRL EEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]