| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is cysM [H]
Identifier: 91789572
GI number: 91789572
Start: 3933321
End: 3934223
Strand: Reverse
Name: cysM [H]
Synonym: Bpro_3726
Alternate gene names: 91789572
Gene position: 3934223-3933321 (Counterclockwise)
Preceding gene: 91789573
Following gene: 91789571
Centisome position: 75.65
GC content: 61.13
Gene sequence:
>903_bases ATGAACTATCCAACCATTGAAGACGCGATCGGCAAAACGCCGCTGGTCGCGTTGCAGCGCATCGCAGCCGCTGAAAACAC CGAACGCAACAACGTCATCCTCGGCAAACTCGAAGGCAACAATCCGGCCGGCTCCGTCAAGGACAGGCCAGCGCTGTCGA TGATCAAGCGCGCCGAGGAGCGCGGCGACATCAAGCCCGGCGACATCCTCATCGAGGCCACCTCGGGCAACACCGGCATC GCGCTGGCCATGGCGGCGGCCATCAAGGGCTATCGGATGGTGCTGATCATGCCGGAGGACCTGAGCATTGAGCGCGCCCA GACGATGAAGGCCTTTGGCGCCGAGCTGGTGCTCACGCCCAAAAGCGGCGGTATGGAACACGCCCGGGACCTGGCCGAGC AGATGCAAAACGAGGGCAAAGGCCGGGTGCTGGACCAGTTTGCCAACCAGGACAATCCGCGCATCCATTACGAGACCACC GGCCCCGAAATATGGACAGATACGTCAGGCAAGGTGACACATTTTGTCAGTGCGATGGGTACAACCGGCACGATTACCGG GGTTTCGCGCTACCTGAAAGAGAAAAATCCGGCCATACGCGTCATCGGTGCGCAACCCAGCGAAGGTTCGCGGATTCCCG GCATCCGCAAATGGCAGCAAGAATACCTGCCCAAAATTTATGACCCCAGCCATGTGGACGAGCTGGTGCTGGTCAGCCAG AGCGATGCGGAAGACATGTGCCGCCGGCTGGCGCGCGAAGAGGGTATTTTTGCCGGCATCTCGTCGGCTGGCGCCTGCTG GGTGGCGCAGGAAATCGCTAAAACCGTCAAGGATGCGGTGATCGTGTTCGTCGTGTGCGACCGCGGCGACCGCTACCTGT CTACCGGCGTCTTTCCCGCCTGA
Upstream 100 bases:
>100_bases GGCACGCCTTTCGGCGGGGGATTTTGAGTCCCCTGCGTCTACCAATTTCACCACCCGGGCGGAAAGAAGCGAAGACCGAA ATTATGGCACAGTGTGGCGT
Downstream 100 bases:
>100_bases TTCACCGTGAATACTGTTTCAGGCCCATATTTTGTTGGGATAGTTTGCTATGAAAAATATAGCAAATTGTTGCGCGTGGG GCATCAGCCATGACACACGA
Product: cysteine synthase B
Products: NA
Alternate protein names: CSase B; O-acetylserine (thiol)-lyase B; OAS-TL B; O-acetylserine sulfhydrylase B [H]
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MNYPTIEDAIGKTPLVALQRIAAAENTERNNVILGKLEGNNPAGSVKDRPALSMIKRAEERGDIKPGDILIEATSGNTGI ALAMAAAIKGYRMVLIMPEDLSIERAQTMKAFGAELVLTPKSGGMEHARDLAEQMQNEGKGRVLDQFANQDNPRIHYETT GPEIWTDTSGKVTHFVSAMGTTGTITGVSRYLKEKNPAIRVIGAQPSEGSRIPGIRKWQQEYLPKIYDPSHVDELVLVSQ SDAEDMCRRLAREEGIFAGISSAGACWVAQEIAKTVKDAVIVFVVCDRGDRYLSTGVFPA
Sequences:
>Translated_300_residues MNYPTIEDAIGKTPLVALQRIAAAENTERNNVILGKLEGNNPAGSVKDRPALSMIKRAEERGDIKPGDILIEATSGNTGI ALAMAAAIKGYRMVLIMPEDLSIERAQTMKAFGAELVLTPKSGGMEHARDLAEQMQNEGKGRVLDQFANQDNPRIHYETT GPEIWTDTSGKVTHFVSAMGTTGTITGVSRYLKEKNPAIRVIGAQPSEGSRIPGIRKWQQEYLPKIYDPSHVDELVLVSQ SDAEDMCRRLAREEGIFAGISSAGACWVAQEIAKTVKDAVIVFVVCDRGDRYLSTGVFPA >Mature_300_residues MNYPTIEDAIGKTPLVALQRIAAAENTERNNVILGKLEGNNPAGSVKDRPALSMIKRAEERGDIKPGDILIEATSGNTGI ALAMAAAIKGYRMVLIMPEDLSIERAQTMKAFGAELVLTPKSGGMEHARDLAEQMQNEGKGRVLDQFANQDNPRIHYETT GPEIWTDTSGKVTHFVSAMGTTGTITGVSRYLKEKNPAIRVIGAQPSEGSRIPGIRKWQQEYLPKIYDPSHVDELVLVSQ SDAEDMCRRLAREEGIFAGISSAGACWVAQEIAKTVKDAVIVFVVCDRGDRYLSTGVFPA
Specific function: Two Cysteine Synthase Enzymes Are Found. Both Catalyze The Same Reaction. Cysteine Synthase B Can Also Use Thiosulfate In Place Of Sulfide To Give Cysteine Thiosulfonate As A Product. [C]
COG id: COG0031
COG function: function code E; Cysteine synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cysteine synthase/cystathionine beta- synthase family [H]
Homologues:
Organism=Homo sapiens, GI295821202, Length=299, Percent_Identity=37.123745819398, Blast_Score=185, Evalue=5e-47, Organism=Homo sapiens, GI295821200, Length=299, Percent_Identity=37.123745819398, Blast_Score=185, Evalue=5e-47, Organism=Homo sapiens, GI4557415, Length=299, Percent_Identity=37.123745819398, Blast_Score=185, Evalue=5e-47, Organism=Escherichia coli, GI2367138, Length=294, Percent_Identity=61.9047619047619, Blast_Score=374, Evalue=1e-105, Organism=Escherichia coli, GI1788754, Length=308, Percent_Identity=44.1558441558442, Blast_Score=199, Evalue=2e-52, Organism=Caenorhabditis elegans, GI17535051, Length=302, Percent_Identity=42.0529801324503, Blast_Score=209, Evalue=2e-54, Organism=Caenorhabditis elegans, GI17562970, Length=305, Percent_Identity=39.672131147541, Blast_Score=202, Evalue=2e-52, Organism=Caenorhabditis elegans, GI32566674, Length=300, Percent_Identity=40.3333333333333, Blast_Score=200, Evalue=8e-52, Organism=Caenorhabditis elegans, GI115535073, Length=300, Percent_Identity=40, Blast_Score=191, Evalue=5e-49, Organism=Caenorhabditis elegans, GI17561720, Length=302, Percent_Identity=38.7417218543046, Blast_Score=170, Evalue=8e-43, Organism=Caenorhabditis elegans, GI25147552, Length=311, Percent_Identity=36.3344051446945, Blast_Score=147, Evalue=9e-36, Organism=Caenorhabditis elegans, GI17534315, Length=315, Percent_Identity=36.1904761904762, Blast_Score=139, Evalue=1e-33, Organism=Caenorhabditis elegans, GI32566672, Length=215, Percent_Identity=36.2790697674419, Blast_Score=133, Evalue=1e-31, Organism=Saccharomyces cerevisiae, GI6321594, Length=317, Percent_Identity=35.0157728706625, Blast_Score=163, Evalue=4e-41, Organism=Saccharomyces cerevisiae, GI6321449, Length=333, Percent_Identity=33.3333333333333, Blast_Score=139, Evalue=6e-34, Organism=Drosophila melanogaster, GI24643623, Length=309, Percent_Identity=37.8640776699029, Blast_Score=175, Evalue=3e-44, Organism=Drosophila melanogaster, GI20129101, Length=309, Percent_Identity=37.8640776699029, Blast_Score=175, Evalue=3e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001216 - InterPro: IPR005856 - InterPro: IPR005858 - InterPro: IPR001926 [H]
Pfam domain/function: PF00291 PALP [H]
EC number: =2.5.1.47 [H]
Molecular weight: Translated: 32600; Mature: 32600
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: PS00901 CYS_SYNTHASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYPTIEDAIGKTPLVALQRIAAAENTERNNVILGKLEGNNPAGSVKDRPALSMIKRAEE CCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH RGDIKPGDILIEATSGNTGIALAMAAAIKGYRMVLIMPEDLSIERAQTMKAFGAELVLTP HCCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEC KSGGMEHARDLAEQMQNEGKGRVLDQFANQDNPRIHYETTGPEIWTDTSGKVTHFVSAMG CCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHC TTGTITGVSRYLKEKNPAIRVIGAQPSEGSRIPGIRKWQQEYLPKIYDPSHVDELVLVSQ CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEC SDAEDMCRRLAREEGIFAGISSAGACWVAQEIAKTVKDAVIVFVVCDRGDRYLSTGVFPA CCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCEECCCCCCC >Mature Secondary Structure MNYPTIEDAIGKTPLVALQRIAAAENTERNNVILGKLEGNNPAGSVKDRPALSMIKRAEE CCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH RGDIKPGDILIEATSGNTGIALAMAAAIKGYRMVLIMPEDLSIERAQTMKAFGAELVLTP HCCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEC KSGGMEHARDLAEQMQNEGKGRVLDQFANQDNPRIHYETTGPEIWTDTSGKVTHFVSAMG CCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHC TTGTITGVSRYLKEKNPAIRVIGAQPSEGSRIPGIRKWQQEYLPKIYDPSHVDELVLVSQ CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEC SDAEDMCRRLAREEGIFAGISSAGACWVAQEIAKTVKDAVIVFVVCDRGDRYLSTGVFPA CCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]