| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789511
Identifier: 91789511
GI number: 91789511
Start: 3861677
End: 3862966
Strand: Reverse
Name: 91789511
Synonym: Bpro_3661
Alternate gene names: NA
Gene position: 3862966-3861677 (Counterclockwise)
Preceding gene: 91789512
Following gene: 91789509
Centisome position: 74.28
GC content: 68.91
Gene sequence:
>1290_bases ATGCGCGCCGCCCTCTGGCTTGTGGCCCTGTTTGGTGTCGCCGTGGCCGTGGCCCTGTTTGCGGGCAACAACCAGGCGGT GGTCACCATCTTCTGGCCGCCGCACCGGCTCGATGTGTCCTTCAACCTGATGGTGCTGGTACTGGCAGGCTTTTTCATGC TGCTGTACGGTGCCCTGCGCGCCGTGTCGGCCCTGTTCGCCCTGCCGCTGGAAGCGCGGCGCTGGCGTGCCCAGCAGAAA GAGCGTGCCATGTACGGCTCCCTGATGGACTCGCTGGCGAACCTGCTGGCGGGGCGCTACATCCGGGCCGCCAAGTCGGC GCAAAACGCGCTGGTGCAGGAAAAAAGCCTGGGCCTGCTCACCGATCAAACTGGCCACGCGACCGGCCACAGCGCCAGCC GTTCCACGCAATTGCGATCGCTGGCCCATCTGCTGGTAGCGGAAAGCGCGCAGTCCCTGCAAAACAGGGCCTTGCGCGAC CAGCATCTGCAGCTGGCGCTCCAAAATGCGGCCCAGCGCCATGCGCAGGAAGTGCGCGAGGGTGTGCAGCTTCGCGCGGC GCGCTGGGCGCTGGAAGACCGCGATGCCGGCGCCGCACTGGAGTGGCTGACGCAGCTGCCCCAAGGCGCCGCGCGGCGCA CCCTGGCCCTGCGCATGAAGCTGCGCGCCACCCGCCAGGTCAAGCAGACCTTGCTGGCGCTGGACACCGCCCGCCTGCTG GCCAAGCACCGTGCTTTTTCACAGGCGGCGGCGCAGAGCATTGTGCGCGGCCTGGCGCTGGAGCTGCTGAACGATGCGCA CGATCCGGCGCAGTTGCAGCAAGCCTGGTTTTCGCTGGATGAGAGCGAGCGGGCCATGCCCGAGCTGGTGGTGCATGCGG CATCGCGGCTGATGGCGCTGCACGGCGACGCCGGGCTGGCGCGCACGTGGCTGCTGCAGGTGTGGGACCGCATGATGGAG CCGCGCTCGGAGATCGGCGACAACCTGCGCATCAAGCTGATCACGGGGCTGGAAGCTGGTCTGGACTCCCTGGATGCGGC CTGGCTGGCGCGCATTGAAGCGGCGCAGCTCAGCCGGCCGCGCGACGCCAATCTGCAGTACCTGGCCGGCATGGCCTGCC TGAACCGTCAGCTGTGGGGCAAGGCCCGCCAGTTGCTCTCGCAAGCCGCCATGGGCCTGCAGGATGCCACGCTGCACCGC AATGCCTGGCGGGCGCTGGCGGTGCTGGCCGAGCAGCGTGAGGATGAGCCGGCGGCGGCGCAGGCCTACAAGCGCGCTGC CCAGCTGTAG
Upstream 100 bases:
>100_bases GGTGCAGGGCCAGCTCAAAACCAGCGAGCTGCCCCGCCTGGATGAAACCATGTCTGCGCTGGCCACTGCGGCCGCAGGCC GTTAAGGGCAGGGGCCAACG
Downstream 100 bases:
>100_bases AGGCGCCAGGCCTTGCTGCCCAAGCCCCGGTGGCCGGGTGCCGCTGCACCGCGCCATGGGCACCACACACGTCCCGGAAC GCCGGCGCAATGCGTCGAAC
Product: putative porphyrin biosynthesis-like protein
Products: NA
Alternate protein names: HemY Domain Protein; HemY-Like Protein; HemY Protein; Protoheme Ix Synthesis Protein; Porphyrin Biosynthesis Protein; Protein Porphyrin Biosynthesis; Hemy Domain-Containing Protein; Porphyrin Biosynthesis Related Protein; Porphyrin Biosynthesis-Related Protein; HemY Protein N-Terminus Family Protein
Number of amino acids: Translated: 429; Mature: 429
Protein sequence:
>429_residues MRAALWLVALFGVAVAVALFAGNNQAVVTIFWPPHRLDVSFNLMVLVLAGFFMLLYGALRAVSALFALPLEARRWRAQQK ERAMYGSLMDSLANLLAGRYIRAAKSAQNALVQEKSLGLLTDQTGHATGHSASRSTQLRSLAHLLVAESAQSLQNRALRD QHLQLALQNAAQRHAQEVREGVQLRAARWALEDRDAGAALEWLTQLPQGAARRTLALRMKLRATRQVKQTLLALDTARLL AKHRAFSQAAAQSIVRGLALELLNDAHDPAQLQQAWFSLDESERAMPELVVHAASRLMALHGDAGLARTWLLQVWDRMME PRSEIGDNLRIKLITGLEAGLDSLDAAWLARIEAAQLSRPRDANLQYLAGMACLNRQLWGKARQLLSQAAMGLQDATLHR NAWRALAVLAEQREDEPAAAQAYKRAAQL
Sequences:
>Translated_429_residues MRAALWLVALFGVAVAVALFAGNNQAVVTIFWPPHRLDVSFNLMVLVLAGFFMLLYGALRAVSALFALPLEARRWRAQQK ERAMYGSLMDSLANLLAGRYIRAAKSAQNALVQEKSLGLLTDQTGHATGHSASRSTQLRSLAHLLVAESAQSLQNRALRD QHLQLALQNAAQRHAQEVREGVQLRAARWALEDRDAGAALEWLTQLPQGAARRTLALRMKLRATRQVKQTLLALDTARLL AKHRAFSQAAAQSIVRGLALELLNDAHDPAQLQQAWFSLDESERAMPELVVHAASRLMALHGDAGLARTWLLQVWDRMME PRSEIGDNLRIKLITGLEAGLDSLDAAWLARIEAAQLSRPRDANLQYLAGMACLNRQLWGKARQLLSQAAMGLQDATLHR NAWRALAVLAEQREDEPAAAQAYKRAAQL >Mature_429_residues MRAALWLVALFGVAVAVALFAGNNQAVVTIFWPPHRLDVSFNLMVLVLAGFFMLLYGALRAVSALFALPLEARRWRAQQK ERAMYGSLMDSLANLLAGRYIRAAKSAQNALVQEKSLGLLTDQTGHATGHSASRSTQLRSLAHLLVAESAQSLQNRALRD QHLQLALQNAAQRHAQEVREGVQLRAARWALEDRDAGAALEWLTQLPQGAARRTLALRMKLRATRQVKQTLLALDTARLL AKHRAFSQAAAQSIVRGLALELLNDAHDPAQLQQAWFSLDESERAMPELVVHAASRLMALHGDAGLARTWLLQVWDRMME PRSEIGDNLRIKLITGLEAGLDSLDAAWLARIEAAQLSRPRDANLQYLAGMACLNRQLWGKARQLLSQAAMGLQDATLHR NAWRALAVLAEQREDEPAAAQAYKRAAQL
Specific function: Unknown
COG id: COG3071
COG function: function code H; Uncharacterized enzyme of heme biosynthesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47393; Mature: 47393
Theoretical pI: Translated: 10.98; Mature: 10.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAALWLVALFGVAVAVALFAGNNQAVVTIFWPPHRLDVSFNLMVLVLAGFFMLLYGALR CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEECCHHHHHHHHHHHHHHHHHHHHH AVSALFALPLEARRWRAQQKERAMYGSLMDSLANLLAGRYIRAAKSAQNALVQEKSLGLL HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE TDQTGHATGHSASRSTQLRSLAHLLVAESAQSLQNRALRDQHLQLALQNAAQRHAQEVRE ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVQLRAARWALEDRDAGAALEWLTQLPQGAARRTLALRMKLRATRQVKQTLLALDTARLL HHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKHRAFSQAAAQSIVRGLALELLNDAHDPAQLQQAWFSLDESERAMPELVVHAASRLMAL HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH HGDAGLARTWLLQVWDRMMEPRSEIGDNLRIKLITGLEAGLDSLDAAWLARIEAAQLSRP CCCCHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCHHCHHHHHHHHHHHHHHHHCCCC RDANLQYLAGMACLNRQLWGKARQLLSQAAMGLQDATLHRNAWRALAVLAEQREDEPAAA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH QAYKRAAQL HHHHHHHCC >Mature Secondary Structure MRAALWLVALFGVAVAVALFAGNNQAVVTIFWPPHRLDVSFNLMVLVLAGFFMLLYGALR CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEECCHHHHHHHHHHHHHHHHHHHHH AVSALFALPLEARRWRAQQKERAMYGSLMDSLANLLAGRYIRAAKSAQNALVQEKSLGLL HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE TDQTGHATGHSASRSTQLRSLAHLLVAESAQSLQNRALRDQHLQLALQNAAQRHAQEVRE ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVQLRAARWALEDRDAGAALEWLTQLPQGAARRTLALRMKLRATRQVKQTLLALDTARLL HHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKHRAFSQAAAQSIVRGLALELLNDAHDPAQLQQAWFSLDESERAMPELVVHAASRLMAL HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH HGDAGLARTWLLQVWDRMMEPRSEIGDNLRIKLITGLEAGLDSLDAAWLARIEAAQLSRP CCCCHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCHHCHHHHHHHHHHHHHHHHCCCC RDANLQYLAGMACLNRQLWGKARQLLSQAAMGLQDATLHRNAWRALAVLAEQREDEPAAA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH QAYKRAAQL HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA