| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is acnB [H]
Identifier: 91789446
GI number: 91789446
Start: 3795605
End: 3798220
Strand: Reverse
Name: acnB [H]
Synonym: Bpro_3595
Alternate gene names: 91789446
Gene position: 3798220-3795605 (Counterclockwise)
Preceding gene: 91789447
Following gene: 91789444
Centisome position: 73.04
GC content: 62.39
Gene sequence:
>2616_bases ATGTCGTCCGAGTTCTTGCAAAGCTACCGCAACCATGTCGCCGAGCGCGCCGTTGCGGGCATTCCACCGCTGCCGCTGTC CGCCCAGCAAACCGGCGAGGTCATTGAACTGCTGAAAAACCCGCCCAAGGGCGAGGAAGCATTTCTGGTTGATCTCATCA CTCACCGCGTTCCCGCCGGTGTGGATGACGCCGCCAAGGTCAAGGCCAGCTACCTGGCGGCCGTGGCGCATGGCACGGAA AAATGCGCGCTGATCTCGCGCGAAAAAGCCACGCAATTGCTGGGCACCATGCTGGGCGGCTACAACATCAGCCCGATGAT TGCGCTGCTTGACGACGCCGAAGACAGTGTGGCCACGCAGGCGGCCAGCGGCCTGAAGAACACCCTGCTGATGTTCGACC AGTTCCATGACGTCCAGGAAAAATCCGACAAGGGCAACAAATACGCCAAGGCCGTGCTGCAAAGCTGGGCCGACGCCGAA TGGTTCACCAGCCGCCCCGAGGTGCCTGAATCCATCAAGCTGACCGTGTTCAAGGTGGCCGGGGAAATCAATACTGACGA CCTGTCACCCGCGCCCGACGCCTGGAGCCGCCCCGATATTCCACTGCATGCGCTGGCCATGCACAAGAATGCCCGTCCTG GCGTCACGCCCGAAGAAGACGGCAAGCGCGGCCCGGTCAAGTTCATCGAAGAGCTCAAGGCCAAGGGCAACCTGGTGGCC TATGTGGGCGACGTGGTGGGCACGGGTTCATCGCGCAAGTCAGCGACCAACTCGGTGCTGTGGTGGACCGGCCAGGACAT CCCCTATGTGCCCAACAAGCGATTTGGCGGCGTCTGCCTGGGCGGCAAGATCGCCCCGATCTTCTACAACACCATGGAAG ACTCCGGCGCGCTGCCGATCGAGCTCGACGTGAGCCAGATGGCCATGGGCGACGTGATCGAGTTGCGCCCCTACGAAGGC AAGGCATTGAAAGACGGCAAGGTGATTGCCGAGTTCAAGCTCAAAAGCGATGTGCTGTTTGACGAAGTGCGCGCCGGTGG CCGCATTCCGCTGATCGTCGGCCGCGGCCTGACCGCCAAGGCGCGTGCGGCGCTGGGCCTGCCCGTGTCTACCCAGTTCC GCCTGCCGCAAAACCCTGTTGACAGCGGCCGCGGCTTCACGCTGGCGCAAAAAATGGTCGGCCGGGCGGTTGGTCTGCCT GAAGGCCAGGGTGTGCGTCCTGGTACCTACTGTGAACCCAAGATGACATCTGTCGGTTCGCAGGACACCACCGGCCCGAT GACGCGCGACGAACTGAAAGACCTGGCTTGCCTGGGCTTCAGTTCCGACCTGGTGATGCAGTCCTTCTGCCACACCGCGG CCTATCCGAAACCGGTGGACGTGAAGATGCACCACGAGTTGCCTGACTTCATCAGCACGCGAGGCGGCATTTCGCTGCGT CCCGGCGACGGCATCATCCACAGCTGGCTCAACCGCATGCTGTTGCCCGACACCGTGGGCACCGGCGGCGACAGCCATAC CCGTTTCCCCATCGGCATCAGCTTCCCCGCGGGTTCCGGCCTCGTGGCTTTCGGCGCCGCCACCGGCGTGATGCCGCTGG ACATGCCGGAATCGGTGCTGGTCCGCTTCAAGGGCGAAATGCAGCCCGGCATCACGCTGCGCGACCTGGTCAATGCGATC CCGCTGTACGCCATCAAGGCCGGCTTGCTGACGGTCGCCAAGCAAGGCAAGAAGAACATCTTCTCGGGCCGAATCCTGGA GATTGAAGGCTTGCCTGACCTGAAGGTGGAGCAGGCGTTTGAACTGAGCGATGCATCGGCCGAGCGCTCCGCCGGCGGTT GCACGGTGCACCTGAACAAGGAGCCCATCATCGAATACATCACCAGCAACATCACGATGCTGAAATGGATGATTGCGACG GGTTACTCGGATGTGCGCACCATCAACCGCCGCATCGCCGCCATGGAAGCCTGGCTGGCCGACCCGCAATTGCTCAAAGG CGATGCGGACGCCGAATACGCCGCCGTGATCGAAATCGACCTGGCCGACATCCACGAACCCATCGTGGCCTGCCCGAACG ATCCGGACGACGTGAAGACGCTGGCCGACGTGGCGGGCTCCAAGATCGACGAAGTGTTCATCGGTTCCTGCATGACCAAC ATCGGCCATTTCCGCGCCGCGTCCAAGCTGCTCGAAAACAAGCGCGACATTCCCGTGAAACTCTGGATGGCTCCACCGAC CAAGATGGATGCCAAGCAGCTGACCGAAGAAGGCCATTACGGCGTGCTGGGTTCTGCCGGCGCGCGCATGGAAATGCCGG GTTGCAGCCTGTGCATGGGCAACCAGGCGCAGGTGAAAGAGGGCGCGACGGTGTTCTCCACGTCCACCCGCAACTTCCCC AACCGTCTGGGCAAGAACTCCAATGTGTACCTGGGCTCCGCCGAGCTGGCCGCGATCTGTTCCAAGCTCGGCCGCATCCC GACCAAGGCCGAGTACATGGCCGACATGGGCGTGTTGACGGCGGCCAGCAGCACCGTGTACCAGTACCTGAACTTTGACA AGGTCAAGGATTACACGGACATGGCAGACACCGTGAAAGACGGCGTGGCAGCGTAA
Upstream 100 bases:
>100_bases ACAGGCGGCTTCGGCCGCCCGATAAACATCATTGCCAGTCCCCAAGACCCCACCCGCGATCCCTACGATCCCACGATTTT TGAATACAGGAGAAACCAGC
Downstream 100 bases:
>100_bases GACTTTCATTCGCGTTCACCCGGACCCGTTAAAAGGCCTGGAAGGTTCGGCAAAAAGCCCCGCAGCGAAAGTTGCGGGGC TTTTTCTTTTTGCTTCAAGT
Product: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Products: NA
Alternate protein names: Aconitase 2; 2-methylisocitrate dehydratase; Citrate hydro-lyase 2 [H]
Number of amino acids: Translated: 871; Mature: 870
Protein sequence:
>871_residues MSSEFLQSYRNHVAERAVAGIPPLPLSAQQTGEVIELLKNPPKGEEAFLVDLITHRVPAGVDDAAKVKASYLAAVAHGTE KCALISREKATQLLGTMLGGYNISPMIALLDDAEDSVATQAASGLKNTLLMFDQFHDVQEKSDKGNKYAKAVLQSWADAE WFTSRPEVPESIKLTVFKVAGEINTDDLSPAPDAWSRPDIPLHALAMHKNARPGVTPEEDGKRGPVKFIEELKAKGNLVA YVGDVVGTGSSRKSATNSVLWWTGQDIPYVPNKRFGGVCLGGKIAPIFYNTMEDSGALPIELDVSQMAMGDVIELRPYEG KALKDGKVIAEFKLKSDVLFDEVRAGGRIPLIVGRGLTAKARAALGLPVSTQFRLPQNPVDSGRGFTLAQKMVGRAVGLP EGQGVRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSSDLVMQSFCHTAAYPKPVDVKMHHELPDFISTRGGISLR PGDGIIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFGAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAI PLYAIKAGLLTVAKQGKKNIFSGRILEIEGLPDLKVEQAFELSDASAERSAGGCTVHLNKEPIIEYITSNITMLKWMIAT GYSDVRTINRRIAAMEAWLADPQLLKGDADAEYAAVIEIDLADIHEPIVACPNDPDDVKTLADVAGSKIDEVFIGSCMTN IGHFRAASKLLENKRDIPVKLWMAPPTKMDAKQLTEEGHYGVLGSAGARMEMPGCSLCMGNQAQVKEGATVFSTSTRNFP NRLGKNSNVYLGSAELAAICSKLGRIPTKAEYMADMGVLTAASSTVYQYLNFDKVKDYTDMADTVKDGVAA
Sequences:
>Translated_871_residues MSSEFLQSYRNHVAERAVAGIPPLPLSAQQTGEVIELLKNPPKGEEAFLVDLITHRVPAGVDDAAKVKASYLAAVAHGTE KCALISREKATQLLGTMLGGYNISPMIALLDDAEDSVATQAASGLKNTLLMFDQFHDVQEKSDKGNKYAKAVLQSWADAE WFTSRPEVPESIKLTVFKVAGEINTDDLSPAPDAWSRPDIPLHALAMHKNARPGVTPEEDGKRGPVKFIEELKAKGNLVA YVGDVVGTGSSRKSATNSVLWWTGQDIPYVPNKRFGGVCLGGKIAPIFYNTMEDSGALPIELDVSQMAMGDVIELRPYEG KALKDGKVIAEFKLKSDVLFDEVRAGGRIPLIVGRGLTAKARAALGLPVSTQFRLPQNPVDSGRGFTLAQKMVGRAVGLP EGQGVRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSSDLVMQSFCHTAAYPKPVDVKMHHELPDFISTRGGISLR PGDGIIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFGAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAI PLYAIKAGLLTVAKQGKKNIFSGRILEIEGLPDLKVEQAFELSDASAERSAGGCTVHLNKEPIIEYITSNITMLKWMIAT GYSDVRTINRRIAAMEAWLADPQLLKGDADAEYAAVIEIDLADIHEPIVACPNDPDDVKTLADVAGSKIDEVFIGSCMTN IGHFRAASKLLENKRDIPVKLWMAPPTKMDAKQLTEEGHYGVLGSAGARMEMPGCSLCMGNQAQVKEGATVFSTSTRNFP NRLGKNSNVYLGSAELAAICSKLGRIPTKAEYMADMGVLTAASSTVYQYLNFDKVKDYTDMADTVKDGVAA >Mature_870_residues SSEFLQSYRNHVAERAVAGIPPLPLSAQQTGEVIELLKNPPKGEEAFLVDLITHRVPAGVDDAAKVKASYLAAVAHGTEK CALISREKATQLLGTMLGGYNISPMIALLDDAEDSVATQAASGLKNTLLMFDQFHDVQEKSDKGNKYAKAVLQSWADAEW FTSRPEVPESIKLTVFKVAGEINTDDLSPAPDAWSRPDIPLHALAMHKNARPGVTPEEDGKRGPVKFIEELKAKGNLVAY VGDVVGTGSSRKSATNSVLWWTGQDIPYVPNKRFGGVCLGGKIAPIFYNTMEDSGALPIELDVSQMAMGDVIELRPYEGK ALKDGKVIAEFKLKSDVLFDEVRAGGRIPLIVGRGLTAKARAALGLPVSTQFRLPQNPVDSGRGFTLAQKMVGRAVGLPE GQGVRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSSDLVMQSFCHTAAYPKPVDVKMHHELPDFISTRGGISLRP GDGIIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFGAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIP LYAIKAGLLTVAKQGKKNIFSGRILEIEGLPDLKVEQAFELSDASAERSAGGCTVHLNKEPIIEYITSNITMLKWMIATG YSDVRTINRRIAAMEAWLADPQLLKGDADAEYAAVIEIDLADIHEPIVACPNDPDDVKTLADVAGSKIDEVFIGSCMTNI GHFRAASKLLENKRDIPVKLWMAPPTKMDAKQLTEEGHYGVLGSAGARMEMPGCSLCMGNQAQVKEGATVFSTSTRNFPN RLGKNSNVYLGSAELAAICSKLGRIPTKAEYMADMGVLTAASSTVYQYLNFDKVKDYTDMADTVKDGVAA
Specific function: Catalyzes the isomerization of citrate to isocitrate via cis-aconitate as well as the dehydration of 2-methylisocitrate to cis-2-methylaconitate [H]
COG id: COG1049
COG function: function code C; Aconitase B
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aconitase/IPM isomerase family [H]
Homologues:
Organism=Escherichia coli, GI2367097, Length=864, Percent_Identity=71.412037037037, Blast_Score=1243, Evalue=0.0, Organism=Escherichia coli, GI1786259, Length=368, Percent_Identity=25.5434782608696, Blast_Score=68, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015931 - InterPro: IPR015937 - InterPro: IPR001030 - InterPro: IPR015928 - InterPro: IPR015932 - InterPro: IPR018136 - InterPro: IPR004406 - InterPro: IPR015930 - InterPro: IPR015933 - InterPro: IPR015929 [H]
Pfam domain/function: PF00330 Aconitase; PF06434 Aconitase_2_N; PF11791 Aconitase_B_N [H]
EC number: =4.2.1.3; =4.2.1.99 [H]
Molecular weight: Translated: 93697; Mature: 93566
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: PS00450 ACONITASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSEFLQSYRNHVAERAVAGIPPLPLSAQQTGEVIELLKNPPKGEEAFLVDLITHRVPAG CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC VDDAAKVKASYLAAVAHGTEKCALISREKATQLLGTMLGGYNISPMIALLDDAEDSVATQ CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH AASGLKNTLLMFDQFHDVQEKSDKGNKYAKAVLQSWADAEWFTSRPEVPESIKLTVFKVA HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEE GEINTDDLSPAPDAWSRPDIPLHALAMHKNARPGVTPEEDGKRGPVKFIEELKAKGNLVA CCCCCCCCCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE YVGDVVGTGSSRKSATNSVLWWTGQDIPYVPNKRFGGVCLGGKIAPIFYNTMEDSGALPI EECHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCEEEEEEEEECCCCCCCEE ELDVSQMAMGDVIELRPYEGKALKDGKVIAEFKLKSDVLFDEVRAGGRIPLIVGRGLTAK EECHHHHHHCCEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCEEEEECCCCCHH ARAALGLPVSTQFRLPQNPVDSGRGFTLAQKMVGRAVGLPEGQGVRPGTYCEPKMTSVGS HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCC QDTTGPMTRDELKDLACLGFSSDLVMQSFCHTAAYPKPVDVKMHHELPDFISTRGGISLR CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHCCCCCEEC PGDGIIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFGAATGVMPLDMPESVL CCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCHHHH VRFKGEMQPGITLRDLVNAIPLYAIKAGLLTVAKQGKKNIFSGRILEIEGLPDLKVEQAF HEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHH ELSDASAERSAGGCTVHLNKEPIIEYITSNITMLKWMIATGYSDVRTINRRIAAMEAWLA CCCCCCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC DPQLLKGDADAEYAAVIEIDLADIHEPIVACPNDPDDVKTLADVAGSKIDEVFIGSCMTN CCHHCCCCCCCCEEEEEEEEHHHCCCCEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHH IGHFRAASKLLENKRDIPVKLWMAPPTKMDAKQLTEEGHYGVLGSAGARMEMPGCSLCMG HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHCCCCCEEEECCCCEECCCCCCEECC NQAQVKEGATVFSTSTRNFPNRLGKNSNVYLGSAELAAICSKLGRIPTKAEYMADMGVLT CCHHHHCCCEEEECCCCCHHHHHCCCCCEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHH AASSTVYQYLNFDKVKDYTDMADTVKDGVAA HHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SSEFLQSYRNHVAERAVAGIPPLPLSAQQTGEVIELLKNPPKGEEAFLVDLITHRVPAG CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC VDDAAKVKASYLAAVAHGTEKCALISREKATQLLGTMLGGYNISPMIALLDDAEDSVATQ CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH AASGLKNTLLMFDQFHDVQEKSDKGNKYAKAVLQSWADAEWFTSRPEVPESIKLTVFKVA HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEE GEINTDDLSPAPDAWSRPDIPLHALAMHKNARPGVTPEEDGKRGPVKFIEELKAKGNLVA CCCCCCCCCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE YVGDVVGTGSSRKSATNSVLWWTGQDIPYVPNKRFGGVCLGGKIAPIFYNTMEDSGALPI EECHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCEEEEEEEEECCCCCCCEE ELDVSQMAMGDVIELRPYEGKALKDGKVIAEFKLKSDVLFDEVRAGGRIPLIVGRGLTAK EECHHHHHHCCEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCEEEEECCCCCHH ARAALGLPVSTQFRLPQNPVDSGRGFTLAQKMVGRAVGLPEGQGVRPGTYCEPKMTSVGS HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCC QDTTGPMTRDELKDLACLGFSSDLVMQSFCHTAAYPKPVDVKMHHELPDFISTRGGISLR CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHCCCCCEEC PGDGIIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFGAATGVMPLDMPESVL CCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCHHHH VRFKGEMQPGITLRDLVNAIPLYAIKAGLLTVAKQGKKNIFSGRILEIEGLPDLKVEQAF HEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHH ELSDASAERSAGGCTVHLNKEPIIEYITSNITMLKWMIATGYSDVRTINRRIAAMEAWLA CCCCCCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC DPQLLKGDADAEYAAVIEIDLADIHEPIVACPNDPDDVKTLADVAGSKIDEVFIGSCMTN CCHHCCCCCCCCEEEEEEEEHHHCCCCEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHH IGHFRAASKLLENKRDIPVKLWMAPPTKMDAKQLTEEGHYGVLGSAGARMEMPGCSLCMG HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHCCCCCEEEECCCCEECCCCCCEECC NQAQVKEGATVFSTSTRNFPNRLGKNSNVYLGSAELAAICSKLGRIPTKAEYMADMGVLT CCHHHHCCCEEEECCCCCHHHHHCCCCCEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHH AASSTVYQYLNFDKVKDYTDMADTVKDGVAA HHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]