BacMap

Definition	Polaromonas sp. JS666 chromosome, complete genome.
Accession	NC_007948
Length	5,200,264

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The map label for this gene is yohF [C]

Identifier: 91789438

GI number: 91789438

Start: 3785148

End: 3785912

Strand: Reverse

Name: yohF [C]

Synonym: Bpro_3587

Alternate gene names: 91789438

Gene position: 3785912-3785148 (Counterclockwise)

Preceding gene: 91789442

Following gene: 91789437

Centisome position: 72.8

GC content: 63.53

Gene sequence:

>765_bases
ATGGGTTCGAACGACAAGGCAAACGGCAAGGTTGCCGTGGTGACCGGGGCGGGTACTGGCATTGGCCGGGCCGTCGCGCT
GGCGTTACTGGAGGCGGGCTACCGCGTGGCGCTGGTCGGGCGGCGCATCGAGCCGCTCAACGAGGTTGCCAAAGCGTCGG
GCACTGATCGCGCGCTGCCGGTGCCCACCGATGTGAGCAACCCCGAATCGGTTGTGGCCCTGTTTGCCAAAGTCAAGGAG
GTGTTCGGGCGGCTCGACCTGCTGTTCAACAACGCCGGCGTGAACGCCCCGGGTGTGAACATCGAGGACATCACGTTCGA
GCAATGGCAAAACGTGGTGAACATCAACCTCACGGGTTCTTTCCTCTGTGCGCAGGGCGCCATCCGGCTGATGAAAGACC
AGCAGCCGCAGGGCGGCCGCATCATCAACAACGGCTCGATTTCCGCCCATGCGCCGCGCCCCAACTCGGCGCCCTACACC
TCGACCAAGCACGCCATCACGGGCCTGACCAAATCGATCTCGCTCGATGGCCGCAAGTACAACATCGCCTGCGGGCAAAT
CGACATCGGCAATGCCCTGACTGAGCTCTCCGCCCGCATGACCAAGGGCGTTCCCCAGGCCAACGGCGAGATCGCGGTGG
AGCCCATGATGGACGCGAAGGAAGTGGCCGATGCGGTGGTTCACATGGCGGCGCTGCCGCTGTCCACCAATGTGCAGTTC
ATGACCATCATGGCCACCAAAATGCCGTTTGTGGGTCGGGGTTAG

Upstream 100 bases:

>100_bases
GGCTGGGGCACAATCCAGAGCATCGGCACTGGCCGTCGGCCGCGGGTCTGACACCCGGATTCTTCTTCATCAACATCAAT
TAAAGAGACAGAGGTACAAC

Downstream 100 bases:

>100_bases
ATGTAGTTTCTCACGACGTTGTTCCCATCAAATCCGAGGCGAGAAGCTGGAGGGCGGTGGGAGGTCGCTGAGTGGGGCCT
GCGAAAGTTGTAGTGATGCA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MGSNDKANGKVAVVTGAGTGIGRAVALALLEAGYRVALVGRRIEPLNEVAKASGTDRALPVPTDVSNPESVVALFAKVKE
VFGRLDLLFNNAGVNAPGVNIEDITFEQWQNVVNINLTGSFLCAQGAIRLMKDQQPQGGRIINNGSISAHAPRPNSAPYT
STKHAITGLTKSISLDGRKYNIACGQIDIGNALTELSARMTKGVPQANGEIAVEPMMDAKEVADAVVHMAALPLSTNVQF
MTIMATKMPFVGRG

Sequences:

>Translated_254_residues
MGSNDKANGKVAVVTGAGTGIGRAVALALLEAGYRVALVGRRIEPLNEVAKASGTDRALPVPTDVSNPESVVALFAKVKE
VFGRLDLLFNNAGVNAPGVNIEDITFEQWQNVVNINLTGSFLCAQGAIRLMKDQQPQGGRIINNGSISAHAPRPNSAPYT
STKHAITGLTKSISLDGRKYNIACGQIDIGNALTELSARMTKGVPQANGEIAVEPMMDAKEVADAVVHMAALPLSTNVQF
MTIMATKMPFVGRG
>Mature_253_residues
GSNDKANGKVAVVTGAGTGIGRAVALALLEAGYRVALVGRRIEPLNEVAKASGTDRALPVPTDVSNPESVVALFAKVKEV
FGRLDLLFNNAGVNAPGVNIEDITFEQWQNVVNINLTGSFLCAQGAIRLMKDQQPQGGRIINNGSISAHAPRPNSAPYTS
TKHAITGLTKSISLDGRKYNIACGQIDIGNALTELSARMTKGVPQANGEIAVEPMMDAKEVADAVVHMAALPLSTNVQFM
TIMATKMPFVGRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=239, Percent_Identity=29.2887029288703, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI31542939, Length=176, Percent_Identity=37.5, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=37.5722543352601, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI40254992, Length=227, Percent_Identity=29.9559471365639, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI209862901, Length=198, Percent_Identity=32.8282828282828, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI19923983, Length=198, Percent_Identity=32.8282828282828, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI4504505, Length=205, Percent_Identity=33.1707317073171, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI19923817, Length=192, Percent_Identity=31.25, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI32483357, Length=185, Percent_Identity=30.8108108108108, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI59889578, Length=184, Percent_Identity=27.1739130434783, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI126723191, Length=194, Percent_Identity=29.3814432989691, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=28.0612244897959, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4503817, Length=181, Percent_Identity=28.1767955801105, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI4758504, Length=182, Percent_Identity=32.4175824175824, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI83715985, Length=181, Percent_Identity=32.5966850828729, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1788459, Length=232, Percent_Identity=33.6206896551724, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1789057, Length=210, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI2367175, Length=241, Percent_Identity=31.1203319502075, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1789208, Length=179, Percent_Identity=32.9608938547486, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1789378, Length=230, Percent_Identity=30.4347826086957, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787335, Length=229, Percent_Identity=27.9475982532751, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082160, Length=238, Percent_Identity=29.4117647058824, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1786812, Length=197, Percent_Identity=30.4568527918782, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87082100, Length=186, Percent_Identity=32.258064516129, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790717, Length=199, Percent_Identity=26.1306532663317, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787820, Length=252, Percent_Identity=25, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=238, Percent_Identity=29.4117647058824, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=196, Percent_Identity=32.6530612244898, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17561402, Length=226, Percent_Identity=28.3185840707965, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=29.3172690763052, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17555612, Length=256, Percent_Identity=32.421875, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71997099, Length=210, Percent_Identity=32.8571428571429, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=239, Percent_Identity=31.7991631799163, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=195, Percent_Identity=28.7179487179487, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=203, Percent_Identity=29.5566502463054, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=213, Percent_Identity=30.0469483568075, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=230, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=227, Percent_Identity=25.9911894273128, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17570069, Length=229, Percent_Identity=27.0742358078603, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=258, Percent_Identity=27.1317829457364, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=177, Percent_Identity=32.7683615819209, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=198, Percent_Identity=28.2828282828283, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=198, Percent_Identity=28.2828282828283, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=181, Percent_Identity=30.3867403314917, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=179, Percent_Identity=29.608938547486, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=226, Percent_Identity=26.9911504424779, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=190, Percent_Identity=30, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=180, Percent_Identity=30, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=178, Percent_Identity=32.5842696629214, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6323882, Length=230, Percent_Identity=28.2608695652174, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322861, Length=259, Percent_Identity=27.7992277992278, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=236, Percent_Identity=27.5423728813559, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007236, Length=258, Percent_Identity=31.3953488372093, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24641232, Length=251, Percent_Identity=29.0836653386454, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI116007234, Length=257, Percent_Identity=28.7937743190661, Blast_Score=87, Evalue=7e-18,
Organism=Drosophila melanogaster, GI116007238, Length=186, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI17737361, Length=176, Percent_Identity=35.7954545454545, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24639444, Length=175, Percent_Identity=32, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI18859837, Length=221, Percent_Identity=32.579185520362, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI28571387, Length=256, Percent_Identity=28.125, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24644339, Length=235, Percent_Identity=29.3617021276596, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21357041, Length=233, Percent_Identity=29.1845493562232, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24641388, Length=253, Percent_Identity=28.0632411067194, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI23397609, Length=230, Percent_Identity=30, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648944, Length=255, Percent_Identity=27.4509803921569, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI116007232, Length=185, Percent_Identity=30.2702702702703, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24580925, Length=183, Percent_Identity=28.9617486338798, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21358495, Length=214, Percent_Identity=27.1028037383178, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648693, Length=247, Percent_Identity=26.3157894736842, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21355889, Length=247, Percent_Identity=26.3157894736842, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24649181, Length=235, Percent_Identity=30.6382978723404, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24643142, Length=236, Percent_Identity=30.0847457627119, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355319, Length=179, Percent_Identity=30.1675977653631, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355631, Length=200, Percent_Identity=27, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281364494, Length=177, Percent_Identity=30.5084745762712, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24663911, Length=252, Percent_Identity=25, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28571526, Length=233, Percent_Identity=27.8969957081545, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI281364892, Length=176, Percent_Identity=30.1136363636364, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24584748, Length=183, Percent_Identity=27.3224043715847, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26665; Mature: 26534

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS00019 ACTININ_1 ; PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSNDKANGKVAVVTGAGTGIGRAVALALLEAGYRVALVGRRIEPLNEVAKASGTDRALP
CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCCC
VPTDVSNPESVVALFAKVKEVFGRLDLLFNNAGVNAPGVNIEDITFEQWQNVVNINLTGS
CCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEECCCHHHHCCEEEEEECCC
FLCAQGAIRLMKDQQPQGGRIINNGSISAHAPRPNSAPYTSTKHAITGLTKSISLDGRKY
HHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCCCCCCCCHHHHHHHHHEEEECCCEE
NIACGQIDIGNALTELSARMTKGVPQANGEIAVEPMMDAKEVADAVVHMAALPLSTNVQF
EEEECCEEHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEE
MTIMATKMPFVGRG
EEEEEECCCCCCCC
>Mature Secondary Structure 
GSNDKANGKVAVVTGAGTGIGRAVALALLEAGYRVALVGRRIEPLNEVAKASGTDRALP
CCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCCC
VPTDVSNPESVVALFAKVKEVFGRLDLLFNNAGVNAPGVNIEDITFEQWQNVVNINLTGS
CCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEECCCHHHHCCEEEEEECCC
FLCAQGAIRLMKDQQPQGGRIINNGSISAHAPRPNSAPYTSTKHAITGLTKSISLDGRKY
HHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCCCCCCCCHHHHHHHHHEEEECCCEE
NIACGQIDIGNALTELSARMTKGVPQANGEIAVEPMMDAKEVADAVVHMAALPLSTNVQF
EEEECCEEHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEE
MTIMATKMPFVGRG
EEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]