| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ilvD [H]
Identifier: 91789386
GI number: 91789386
Start: 3734783
End: 3736522
Strand: Direct
Name: ilvD [H]
Synonym: Bpro_3532
Alternate gene names: 91789386
Gene position: 3734783-3736522 (Clockwise)
Preceding gene: 91789375
Following gene: 91789388
Centisome position: 71.82
GC content: 63.97
Gene sequence:
>1740_bases ATGAGCAACCAGACACCCAAAAAGAAACCCGAAGAACTACGCAGCCAGCAATGGTTTGGGCGGCAGGACCGCGACGGCTT TGCCTACCGCAGCTGGGTCAAGGGCAAGGGCGTGCCGCATGACCAGTTCGACGGACGCCCCGTCATCGGCATCTGCAACA CCTTCAGCGAACTCACCCCCTGCAACAGCCACTTCCGCACCATTGCGGAGCAGGTCAAGATCGGCGTGTACGAGGCCGGC GGTTTTCCGCTGGAGTTCCCCGTGATGTCGCTGGGCGAGACCCTGTTGCGCCCGACTGCCATGCTCTACCGCAACCTGGC CAGCATGGACGTGGAAGAAAGCATTCGCGGCAACCCGATTGACGGCGTGGTGCTGCTGATGGGCTGCGACAAGACCACGC CCTCGCTGGTGATGGGCGCGTCCAGCGTGGACCTGCCGACGGTGGGCGTCAGCGGCGGCCCCATGCTCAGCGGCAAGTGG CGCGGCCAGGAGCTCGGCTCCGGCACCGGCGTGTGGAGCATGAGCGAGCAGGTGCGCGCCGGCACACTCAAGCTGCAGGA TTTCTTTGAGGCCGAAAGCTGCATGCACCGCAGCCATGGCCACTGCATGACCATGGGCACGGCCTCCACCATGGCCAGCA TGGTGGAAGCGCTGGGCATTGGCCTGCCGGGCAATGCAGCCTATCCCGCGGTGGACGGCCGGCGCAATGTGCTGGCCCGC CTGGCCGGACGGCGGGCGGTCGAGATGGTGCATGAAGACCTCACGCTCTCCAAAATCCTGACACGCGAGGCATTTGAAAA CGCCATCAAGACGCTGGCGGCCATTGGCGGCTCCACCAACGCCGTGATTCACCTGATTGCCATTGCCGGGCGCATTGGCG TGAAGCTGACGGTGGACGACTTTGACCGGCTGGCCAGCGAACTGCCCTGCCTCGTCAACCTGCAGCCTTCCGGCAAATAC CTGATGGAAGACTTCTGCTATGCCGGCGGCCTGCCGGTGGTGATGAAGGAAATTGCGCAGCACCTGCACACGGACGCCAT CACCGCCAACGGCAAGACCATAGGCGAGAACATTGCCGACGCCGAGAACTACAACACCGACGTGATCATGCCGCTAAGCA CGCCATTCAAGGACAAGGCGGGCATTGCGGTGCTGCGCGGCAACCTCTCGCCGCGCGGCGCCGTCATCAAGCCCAGTGCC GCCACACCTGAGCTGATGGTGCACAAAGGCCGGGCCGTGGTGTTTGAAACCATCGAGGACTTTCACGCCCGCATCGATGA CGAAGACCTCGACATCGACGAAACCTGCGTGATGGTGCTAAAAAATTGCGGACCCAAGGGCTACCCCGGCATGGCCGAGG TGGGCAACATGCCGCTGCCGCCCAAAGTGCTGCGCAAGGGCATTACCGACATGGTGCGCATCAGCGACGCCCGCATGAGC GGCACCGCTTACGGCACCGTGGTGCTGCACACGGCGCCCGAGGCGGCGGCGGGCGGCCCGCTGGCGCTGGTGCAAAACGG CGACATCATTGAACTCGACGTACCCAACCGCCGCCTGCACCTGCACGTGAGCGACGAAGAACTCGCCAAACGCATGGCCG ACTGGAAGGCACCGGCGCCGCCGTTGACGTCCGGCTACTGGAAACTCTACATTGACCATGTGCTGCAGGCCGACGAGGGC GTGGACCTGGACTTTCTGGTGGGCAAGCGCGGCGCTTTTGTCCCGAGGGATAATCACTGA
Upstream 100 bases:
>100_bases ATGGGCCACTATTGTCTTATCATCATATGATTGAGCCTCGATTGGCATCCATGCAAACCCTGAATCCTTGACGGAAACTT TTACGGAAACGCAGCACACC
Downstream 100 bases:
>100_bases CTTTTGCCCGCAAGGCAATCACCGCATTGCCTTGCGCCGCAAGCACCGGCTGGCGCCACGCTGGCAGTTACCATGGGTGC AGCTGGCGCGTCCCGGCCCC
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD [H]
Number of amino acids: Translated: 579; Mature: 578
Protein sequence:
>579_residues MSNQTPKKKPEELRSQQWFGRQDRDGFAYRSWVKGKGVPHDQFDGRPVIGICNTFSELTPCNSHFRTIAEQVKIGVYEAG GFPLEFPVMSLGETLLRPTAMLYRNLASMDVEESIRGNPIDGVVLLMGCDKTTPSLVMGASSVDLPTVGVSGGPMLSGKW RGQELGSGTGVWSMSEQVRAGTLKLQDFFEAESCMHRSHGHCMTMGTASTMASMVEALGIGLPGNAAYPAVDGRRNVLAR LAGRRAVEMVHEDLTLSKILTREAFENAIKTLAAIGGSTNAVIHLIAIAGRIGVKLTVDDFDRLASELPCLVNLQPSGKY LMEDFCYAGGLPVVMKEIAQHLHTDAITANGKTIGENIADAENYNTDVIMPLSTPFKDKAGIAVLRGNLSPRGAVIKPSA ATPELMVHKGRAVVFETIEDFHARIDDEDLDIDETCVMVLKNCGPKGYPGMAEVGNMPLPPKVLRKGITDMVRISDARMS GTAYGTVVLHTAPEAAAGGPLALVQNGDIIELDVPNRRLHLHVSDEELAKRMADWKAPAPPLTSGYWKLYIDHVLQADEG VDLDFLVGKRGAFVPRDNH
Sequences:
>Translated_579_residues MSNQTPKKKPEELRSQQWFGRQDRDGFAYRSWVKGKGVPHDQFDGRPVIGICNTFSELTPCNSHFRTIAEQVKIGVYEAG GFPLEFPVMSLGETLLRPTAMLYRNLASMDVEESIRGNPIDGVVLLMGCDKTTPSLVMGASSVDLPTVGVSGGPMLSGKW RGQELGSGTGVWSMSEQVRAGTLKLQDFFEAESCMHRSHGHCMTMGTASTMASMVEALGIGLPGNAAYPAVDGRRNVLAR LAGRRAVEMVHEDLTLSKILTREAFENAIKTLAAIGGSTNAVIHLIAIAGRIGVKLTVDDFDRLASELPCLVNLQPSGKY LMEDFCYAGGLPVVMKEIAQHLHTDAITANGKTIGENIADAENYNTDVIMPLSTPFKDKAGIAVLRGNLSPRGAVIKPSA ATPELMVHKGRAVVFETIEDFHARIDDEDLDIDETCVMVLKNCGPKGYPGMAEVGNMPLPPKVLRKGITDMVRISDARMS GTAYGTVVLHTAPEAAAGGPLALVQNGDIIELDVPNRRLHLHVSDEELAKRMADWKAPAPPLTSGYWKLYIDHVLQADEG VDLDFLVGKRGAFVPRDNH >Mature_578_residues SNQTPKKKPEELRSQQWFGRQDRDGFAYRSWVKGKGVPHDQFDGRPVIGICNTFSELTPCNSHFRTIAEQVKIGVYEAGG FPLEFPVMSLGETLLRPTAMLYRNLASMDVEESIRGNPIDGVVLLMGCDKTTPSLVMGASSVDLPTVGVSGGPMLSGKWR GQELGSGTGVWSMSEQVRAGTLKLQDFFEAESCMHRSHGHCMTMGTASTMASMVEALGIGLPGNAAYPAVDGRRNVLARL AGRRAVEMVHEDLTLSKILTREAFENAIKTLAAIGGSTNAVIHLIAIAGRIGVKLTVDDFDRLASELPCLVNLQPSGKYL MEDFCYAGGLPVVMKEIAQHLHTDAITANGKTIGENIADAENYNTDVIMPLSTPFKDKAGIAVLRGNLSPRGAVIKPSAA TPELMVHKGRAVVFETIEDFHARIDDEDLDIDETCVMVLKNCGPKGYPGMAEVGNMPLPPKVLRKGITDMVRISDARMSG TAYGTVVLHTAPEAAAGGPLALVQNGDIIELDVPNRRLHLHVSDEELAKRMADWKAPAPPLTSGYWKLYIDHVLQADEGV DLDFLVGKRGAFVPRDNH
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=559, Percent_Identity=30.4114490161002, Blast_Score=218, Evalue=9e-58, Organism=Escherichia coli, GI1788157, Length=515, Percent_Identity=30.2912621359223, Blast_Score=186, Evalue=4e-48, Organism=Escherichia coli, GI2367371, Length=469, Percent_Identity=33.9019189765458, Blast_Score=179, Evalue=3e-46, Organism=Escherichia coli, GI1786464, Length=449, Percent_Identity=32.0712694877506, Blast_Score=152, Evalue=6e-38, Organism=Saccharomyces cerevisiae, GI6322476, Length=554, Percent_Identity=31.7689530685921, Blast_Score=257, Evalue=3e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 62668; Mature: 62537
Theoretical pI: Translated: 6.21; Mature: 6.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNQTPKKKPEELRSQQWFGRQDRDGFAYRSWVKGKGVPHDQFDGRPVIGICNTFSELTP CCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHCCC CNSHFRTIAEQVKIGVYEAGGFPLEFPVMSLGETLLRPTAMLYRNLASMDVEESIRGNPI CHHHHHHHHHHHHEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC DGVVLLMGCDKTTPSLVMGASSVDLPTVGVSGGPMLSGKWRGQELGSGTGVWSMSEQVRA CCEEEEEECCCCCCHHEECCCCCCCCEECCCCCCEECCCCCCCCCCCCCCCCCCHHHHHH GTLKLQDFFEAESCMHRSHGHCMTMGTASTMASMVEALGIGLPGNAAYPAVDGRRNVLAR CEEHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH LAGRRAVEMVHEDLTLSKILTREAFENAIKTLAAIGGSTNAVIHLIAIAGRIGVKLTVDD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHEEHHCCCCEEEEHHH FDRLASELPCLVNLQPSGKYLMEDFCYAGGLPVVMKEIAQHLHTDAITANGKTIGENIAD HHHHHHHCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCEECCCCCCCCCCCC AENYNTDVIMPLSTPFKDKAGIAVLRGNLSPRGAVIKPSAATPELMVHKGRAVVFETIED CCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCEECCCCCCCHHEEECCCEEEHHHHHH FHARIDDEDLDIDETCVMVLKNCGPKGYPGMAEVGNMPLPPKVLRKGITDMVRISDARMS HHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC GTAYGTVVLHTAPEAAAGGPLALVQNGDIIELDVPNRRLHLHVSDEELAKRMADWKAPAP CCEEEEEEEEECCCCCCCCCEEEEECCCEEEEECCCCEEEEEECHHHHHHHHHHCCCCCC PLTSGYWKLYIDHVLQADEGVDLDFLVGKRGAFVPRDNH CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC >Mature Secondary Structure SNQTPKKKPEELRSQQWFGRQDRDGFAYRSWVKGKGVPHDQFDGRPVIGICNTFSELTP CCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHCCC CNSHFRTIAEQVKIGVYEAGGFPLEFPVMSLGETLLRPTAMLYRNLASMDVEESIRGNPI CHHHHHHHHHHHHEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC DGVVLLMGCDKTTPSLVMGASSVDLPTVGVSGGPMLSGKWRGQELGSGTGVWSMSEQVRA CCEEEEEECCCCCCHHEECCCCCCCCEECCCCCCEECCCCCCCCCCCCCCCCCCHHHHHH GTLKLQDFFEAESCMHRSHGHCMTMGTASTMASMVEALGIGLPGNAAYPAVDGRRNVLAR CEEHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH LAGRRAVEMVHEDLTLSKILTREAFENAIKTLAAIGGSTNAVIHLIAIAGRIGVKLTVDD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHEEHHCCCCEEEEHHH FDRLASELPCLVNLQPSGKYLMEDFCYAGGLPVVMKEIAQHLHTDAITANGKTIGENIAD HHHHHHHCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCEECCCCCCCCCCCC AENYNTDVIMPLSTPFKDKAGIAVLRGNLSPRGAVIKPSAATPELMVHKGRAVVFETIED CCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCEECCCCCCCHHEEECCCEEEHHHHHH FHARIDDEDLDIDETCVMVLKNCGPKGYPGMAEVGNMPLPPKVLRKGITDMVRISDARMS HHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC GTAYGTVVLHTAPEAAAGGPLALVQNGDIIELDVPNRRLHLHVSDEELAKRMADWKAPAP CCEEEEEEEEECCCCCCCCCEEEEECCCEEEEECCCCEEEEEECHHHHHHHHHHCCCCCC PLTSGYWKLYIDHVLQADEGVDLDFLVGKRGAFVPRDNH CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA