| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yjjK [C]
Identifier: 91789373
GI number: 91789373
Start: 3721199
End: 3722860
Strand: Reverse
Name: yjjK [C]
Synonym: Bpro_3519
Alternate gene names: 91789373
Gene position: 3722860-3721199 (Counterclockwise)
Preceding gene: 91789376
Following gene: 91789372
Centisome position: 71.59
GC content: 61.73
Gene sequence:
>1662_bases ATGGCCCAGTACGTATTTACCATGAACAAGGTCGGCAAAATCGTGCCGCCCAAGCGTCAAATTCTCAAAGAGGTTTCGCT CAGCTTTTTCCCTGGCGCCAAGATTGGCGTGCTGGGCACCAACGGCTCCGGCAAGTCCACGCTGCTCAAGATCATGGCTG GCCTGGACACCGAGATAGAAGGCGAAGCCACCCCCATGCCGGGGCTGAACATCGGCTACCTGCCGCAGGAGCCCAAGCTC GACCCTGGGCACACGGTGCGCGAGAGTGTCGAGGCCGGCATGGGGGCGGTATTTGCCGCCAAGGCCCAGCTCGAAGCGGT GTACACCGCCTACGGCGAGCCCGATGCCGACTTTGACGCCCTGGCCGCCGAGCAGGCTCGCCTGGAAGCCATCATCGCGA CCTCGGGCACGGATTCCGAGCACCAGCTCGAGATCGCCGCCGACGCGCTGCGCCTGCCGCCCTGGGACGCCCAGATCAGT GTTCTGTCGGGTGGCGAAAAACGCCGCGTGGCCTTGTGCAGCCTGCTGCTGTCCAAGCCCGACATGCTGCTGCTCGACGA GCCGACCAACCACCTGGACGCCGAATCGGTGGACTGGCTGGAGCAGTTTCTGCAGCGCTATTCGGGTACGGTGGTTGCCA TCACCCATGACCGTTACTTCCTGGACAACGCGGCCGAGTGGATTCTGGAACTGGACCGCGGCCATGGCATCCCCTGGAAA GGCAACTACAGCAGCTGGCTGGATCAAAAAGGCGAGCGTCTGGCCCAGGAGCAAAAGGGCGAAGAGGCCCGTGCCAAGGC TCTGAAAAAGGAACTGGAGTGGTCACGCCAGAACCCGAAAGCGCGACAGGCCAAGAGCAAGTCGCGTCTGGCACGTTTTG AAGAGCTGTCTGATTTTGAATACCAGAAACGCGTGGAGACCAACGAGATTTTCATCCCGGTGGCCGAGCGTCTGGGCAAT GAGGTCATTGAGTTCAAGGGCGTCAGCAAGTCCTTCGGCGACCGCCTGTTGATCGACAACCTGAGCTTCAAGGTGCCGGC CGGCGCCATCGTCGGCATCATCGGCCCCAACGGCGCGGGCAAGTCCACGTTGTTCAAGCTGATTGCCGGCAAAGAGCAGC CGGACAGCGGCGAAGTGGTGATTGGCAAGACAGCGCGCATGGCTTTTGTGGACCAGCACCGTGATGACCTGGCCAACGAA AAAACCGTCTGGGAAGATATCTCGGGCGGCCTCGACCTGCTCACCGTCGGCAAATTCACCATGCCCAGCCGCGCGTATGC GGGCCGCTTCAACTTCAACGGCGCCGACCAGCAAAAACGCGTCGGCATGCTGTCGGGCGGCGAGCGCGGGCGCCTGCACC TGGCCAAGACACTGATTGCTGGCGGCAACGTGTTGATGCTTGACGAACCGTCCAATGACCTCGACGTGGAAACCCTGCGC GCGCTCGAAGACGCACTGCTCGAATTCGCCGGCTCCGTCATGGTCATCAGCCACGACCGCTGGTTCCTTGACCGCATTGC CACGCACATCCTTGCGGCCGAAGGCGACAGCCAGTGGACCTTCTTCAACGGCAACTACCAGGAATACGAAGCCGACAAGA AGAAGCGCCTGGGTGAAGAAGGCGCCAAGCCGAAGCGCGTGCGCTTCAAGGCATTGCATTAA
Upstream 100 bases:
>100_bases CTGCAGATGACTCTGCAAAAAGCCTGTAAAAATAGCAGCTACAGGCCGTGTGCAGCCCGTTTTCTTGCATTGTTTTTCAT TTTTACCAAAGTTGATCCTG
Downstream 100 bases:
>100_bases GTTCTCGCGGTCGCTCTACTGGAGCGCAGCAGCCCACTCCTTCTCCCTCTGGGAGAAGGTCGGGATGAGGGCTGGCGGCG TGTGATGTTGCACTGTGCTT
Product: putative ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 553; Mature: 552
Protein sequence:
>553_residues MAQYVFTMNKVGKIVPPKRQILKEVSLSFFPGAKIGVLGTNGSGKSTLLKIMAGLDTEIEGEATPMPGLNIGYLPQEPKL DPGHTVRESVEAGMGAVFAAKAQLEAVYTAYGEPDADFDALAAEQARLEAIIATSGTDSEHQLEIAADALRLPPWDAQIS VLSGGEKRRVALCSLLLSKPDMLLLDEPTNHLDAESVDWLEQFLQRYSGTVVAITHDRYFLDNAAEWILELDRGHGIPWK GNYSSWLDQKGERLAQEQKGEEARAKALKKELEWSRQNPKARQAKSKSRLARFEELSDFEYQKRVETNEIFIPVAERLGN EVIEFKGVSKSFGDRLLIDNLSFKVPAGAIVGIIGPNGAGKSTLFKLIAGKEQPDSGEVVIGKTARMAFVDQHRDDLANE KTVWEDISGGLDLLTVGKFTMPSRAYAGRFNFNGADQQKRVGMLSGGERGRLHLAKTLIAGGNVLMLDEPSNDLDVETLR ALEDALLEFAGSVMVISHDRWFLDRIATHILAAEGDSQWTFFNGNYQEYEADKKKRLGEEGAKPKRVRFKALH
Sequences:
>Translated_553_residues MAQYVFTMNKVGKIVPPKRQILKEVSLSFFPGAKIGVLGTNGSGKSTLLKIMAGLDTEIEGEATPMPGLNIGYLPQEPKL DPGHTVRESVEAGMGAVFAAKAQLEAVYTAYGEPDADFDALAAEQARLEAIIATSGTDSEHQLEIAADALRLPPWDAQIS VLSGGEKRRVALCSLLLSKPDMLLLDEPTNHLDAESVDWLEQFLQRYSGTVVAITHDRYFLDNAAEWILELDRGHGIPWK GNYSSWLDQKGERLAQEQKGEEARAKALKKELEWSRQNPKARQAKSKSRLARFEELSDFEYQKRVETNEIFIPVAERLGN EVIEFKGVSKSFGDRLLIDNLSFKVPAGAIVGIIGPNGAGKSTLFKLIAGKEQPDSGEVVIGKTARMAFVDQHRDDLANE KTVWEDISGGLDLLTVGKFTMPSRAYAGRFNFNGADQQKRVGMLSGGERGRLHLAKTLIAGGNVLMLDEPSNDLDVETLR ALEDALLEFAGSVMVISHDRWFLDRIATHILAAEGDSQWTFFNGNYQEYEADKKKRLGEEGAKPKRVRFKALH >Mature_552_residues AQYVFTMNKVGKIVPPKRQILKEVSLSFFPGAKIGVLGTNGSGKSTLLKIMAGLDTEIEGEATPMPGLNIGYLPQEPKLD PGHTVRESVEAGMGAVFAAKAQLEAVYTAYGEPDADFDALAAEQARLEAIIATSGTDSEHQLEIAADALRLPPWDAQISV LSGGEKRRVALCSLLLSKPDMLLLDEPTNHLDAESVDWLEQFLQRYSGTVVAITHDRYFLDNAAEWILELDRGHGIPWKG NYSSWLDQKGERLAQEQKGEEARAKALKKELEWSRQNPKARQAKSKSRLARFEELSDFEYQKRVETNEIFIPVAERLGNE VIEFKGVSKSFGDRLLIDNLSFKVPAGAIVGIIGPNGAGKSTLFKLIAGKEQPDSGEVVIGKTARMAFVDQHRDDLANEK TVWEDISGGLDLLTVGKFTMPSRAYAGRFNFNGADQQKRVGMLSGGERGRLHLAKTLIAGGNVLMLDEPSNDLDVETLRA LEDALLEFAGSVMVISHDRWFLDRIATHILAAEGDSQWTFFNGNYQEYEADKKKRLGEEGAKPKRVRFKALH
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=532, Percent_Identity=27.2556390977444, Blast_Score=177, Evalue=2e-44, Organism=Homo sapiens, GI10947137, Length=545, Percent_Identity=28.6238532110092, Blast_Score=164, Evalue=2e-40, Organism=Homo sapiens, GI27881506, Length=545, Percent_Identity=28.6238532110092, Blast_Score=164, Evalue=2e-40, Organism=Homo sapiens, GI10947135, Length=555, Percent_Identity=27.9279279279279, Blast_Score=160, Evalue=3e-39, Organism=Homo sapiens, GI69354671, Length=555, Percent_Identity=27.9279279279279, Blast_Score=160, Evalue=4e-39, Organism=Escherichia coli, GI2367384, Length=553, Percent_Identity=68.1735985533454, Blast_Score=787, Evalue=0.0, Organism=Escherichia coli, GI1787182, Length=515, Percent_Identity=33.9805825242718, Blast_Score=255, Evalue=4e-69, Organism=Escherichia coli, GI1789751, Length=548, Percent_Identity=32.4817518248175, Blast_Score=248, Evalue=8e-67, Organism=Escherichia coli, GI1787041, Length=516, Percent_Identity=31.0077519379845, Blast_Score=231, Evalue=8e-62, Organism=Escherichia coli, GI87081782, Length=576, Percent_Identity=25.3472222222222, Blast_Score=113, Evalue=3e-26, Organism=Escherichia coli, GI87081709, Length=192, Percent_Identity=29.6875, Blast_Score=95, Evalue=1e-20, Organism=Escherichia coli, GI48994943, Length=487, Percent_Identity=24.6406570841889, Blast_Score=93, Evalue=4e-20, Organism=Escherichia coli, GI1787164, Length=191, Percent_Identity=30.8900523560209, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1788165, Length=188, Percent_Identity=32.9787234042553, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1788761, Length=196, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1786398, Length=209, Percent_Identity=28.2296650717703, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI1787712, Length=194, Percent_Identity=28.3505154639175, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1788225, Length=212, Percent_Identity=26.8867924528302, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI87081791, Length=196, Percent_Identity=27.0408163265306, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1786345, Length=222, Percent_Identity=28.3783783783784, Blast_Score=70, Evalue=5e-13, Organism=Escherichia coli, GI1790467, Length=165, Percent_Identity=29.6969696969697, Blast_Score=69, Evalue=9e-13, Organism=Escherichia coli, GI87081834, Length=202, Percent_Identity=24.7524752475248, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1790739, Length=206, Percent_Identity=29.126213592233, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1789864, Length=222, Percent_Identity=27.027027027027, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787029, Length=248, Percent_Identity=28.6290322580645, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1786563, Length=190, Percent_Identity=26.8421052631579, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1789873, Length=212, Percent_Identity=26.8867924528302, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1786703, Length=213, Percent_Identity=30.9859154929577, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI1787370, Length=192, Percent_Identity=25, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1788210, Length=235, Percent_Identity=25.1063829787234, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1786872, Length=209, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1789991, Length=198, Percent_Identity=29.2929292929293, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI87082267, Length=208, Percent_Identity=25.9615384615385, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1788053, Length=201, Percent_Identity=28.8557213930348, Blast_Score=62, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17559834, Length=561, Percent_Identity=27.2727272727273, Blast_Score=194, Evalue=7e-50, Organism=Caenorhabditis elegans, GI17553372, Length=549, Percent_Identity=30.7832422586521, Blast_Score=183, Evalue=3e-46, Organism=Caenorhabditis elegans, GI17555318, Length=571, Percent_Identity=26.6199649737303, Blast_Score=159, Evalue=3e-39, Organism=Caenorhabditis elegans, GI17569145, Length=264, Percent_Identity=29.9242424242424, Blast_Score=72, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6320874, Length=537, Percent_Identity=29.4227188081937, Blast_Score=186, Evalue=8e-48, Organism=Saccharomyces cerevisiae, GI6321121, Length=526, Percent_Identity=25.8555133079848, Blast_Score=170, Evalue=5e-43, Organism=Saccharomyces cerevisiae, GI6323278, Length=373, Percent_Identity=26.2734584450402, Blast_Score=121, Evalue=4e-28, Organism=Saccharomyces cerevisiae, GI6324314, Length=374, Percent_Identity=26.4705882352941, Blast_Score=115, Evalue=3e-26, Organism=Saccharomyces cerevisiae, GI6325030, Length=397, Percent_Identity=26.7002518891688, Blast_Score=106, Evalue=9e-24, Organism=Saccharomyces cerevisiae, GI6320266, Length=376, Percent_Identity=26.063829787234, Blast_Score=81, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6323959, Length=232, Percent_Identity=28.448275862069, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24666836, Length=538, Percent_Identity=28.2527881040892, Blast_Score=192, Evalue=4e-49, Organism=Drosophila melanogaster, GI24642252, Length=552, Percent_Identity=27.8985507246377, Blast_Score=179, Evalue=5e-45, Organism=Drosophila melanogaster, GI18859989, Length=552, Percent_Identity=27.8985507246377, Blast_Score=179, Evalue=5e-45, Organism=Drosophila melanogaster, GI24641342, Length=549, Percent_Identity=28.5974499089253, Blast_Score=177, Evalue=2e-44, Organism=Drosophila melanogaster, GI24666092, Length=201, Percent_Identity=30.3482587064677, Blast_Score=73, Evalue=4e-13, Organism=Drosophila melanogaster, GI221512771, Length=184, Percent_Identity=29.8913043478261, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI28574259, Length=195, Percent_Identity=27.1794871794872, Blast_Score=66, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022374 - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 61042; Mature: 60911
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQYVFTMNKVGKIVPPKRQILKEVSLSFFPGAKIGVLGTNGSGKSTLLKIMAGLDTEIE CCCEEEEHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCC GEATPMPGLNIGYLPQEPKLDPGHTVRESVEAGMGAVFAAKAQLEAVYTAYGEPDADFDA CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHEEECCCCCCCHHH LAAEQARLEAIIATSGTDSEHQLEIAADALRLPPWDAQISVLSGGEKRRVALCSLLLSKP HHHHHHHEEEEEEECCCCCCCEEEEEHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCC DMLLLDEPTNHLDAESVDWLEQFLQRYSGTVVAITHDRYFLDNAAEWILELDRGHGIPWK CEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCC GNYSSWLDQKGERLAQEQKGEEARAKALKKELEWSRQNPKARQAKSKSRLARFEELSDFE CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCH YQKRVETNEIFIPVAERLGNEVIEFKGVSKSFGDRLLIDNLSFKVPAGAIVGIIGPNGAG HHHCCCCCEEEEEHHHHCCCCEEEECCCCHHHCCEEEEECCCEECCCCEEEEEECCCCCC KSTLFKLIAGKEQPDSGEVVIGKTARMAFVDQHRDDLANEKTVWEDISGGLDLLTVGKFT HHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCC MPSRAYAGRFNFNGADQQKRVGMLSGGERGRLHLAKTLIAGGNVLMLDEPSNDLDVETLR CCCCHHCCCCCCCCCCHHHHCCCCCCCCCCCCCEEHHHHCCCCEEEEECCCCCCCHHHHH ALEDALLEFAGSVMVISHDRWFLDRIATHILAAEGDSQWTFFNGNYQEYEADKKKRLGEE HHHHHHHHHCCCEEEEECCHHHHHHHHHHHEECCCCCCEEEECCCHHHHHHHHHHHHHHC GAKPKRVRFKALH CCCCCEEEEEECC >Mature Secondary Structure AQYVFTMNKVGKIVPPKRQILKEVSLSFFPGAKIGVLGTNGSGKSTLLKIMAGLDTEIE CCEEEEHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCC GEATPMPGLNIGYLPQEPKLDPGHTVRESVEAGMGAVFAAKAQLEAVYTAYGEPDADFDA CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHEEECCCCCCCHHH LAAEQARLEAIIATSGTDSEHQLEIAADALRLPPWDAQISVLSGGEKRRVALCSLLLSKP HHHHHHHEEEEEEECCCCCCCEEEEEHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCC DMLLLDEPTNHLDAESVDWLEQFLQRYSGTVVAITHDRYFLDNAAEWILELDRGHGIPWK CEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCC GNYSSWLDQKGERLAQEQKGEEARAKALKKELEWSRQNPKARQAKSKSRLARFEELSDFE CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCH YQKRVETNEIFIPVAERLGNEVIEFKGVSKSFGDRLLIDNLSFKVPAGAIVGIIGPNGAG HHHCCCCCEEEEEHHHHCCCCEEEECCCCHHHCCEEEEECCCEECCCCEEEEEECCCCCC KSTLFKLIAGKEQPDSGEVVIGKTARMAFVDQHRDDLANEKTVWEDISGGLDLLTVGKFT HHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCC MPSRAYAGRFNFNGADQQKRVGMLSGGERGRLHLAKTLIAGGNVLMLDEPSNDLDVETLR CCCCHHCCCCCCCCCCHHHHCCCCCCCCCCCCCEEHHHHCCCCEEEEECCCCCCCHHHHH ALEDALLEFAGSVMVISHDRWFLDRIATHILAAEGDSQWTFFNGNYQEYEADKKKRLGEE HHHHHHHHHCCCEEEEECCHHHHHHHHHHHEECCCCCCEEEECCCHHHHHHHHHHHHHHC GAKPKRVRFKALH CCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]