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The map label for this gene is ydhC [H]

Identifier: 91788983

GI number: 91788983

Start: 3297423

End: 3298124

Strand: Direct

Name: ydhC [H]

Synonym: Bpro_3123

Alternate gene names: 91788983

Gene position: 3297423-3298124 (Clockwise)

Preceding gene: 91788980

Following gene: 91788984

Centisome position: 63.41

GC content: 64.67

Gene sequence:

>702_bases
ATGTCATCCCAGATTGACTACACCACCCGTGAACTGAGGCGAAAAATCCTCAGTGGCGAGGTGGCCCCCGGGAATCGCAT
GGTTGAGCTGGAGCTGTCGGCGCAACTGGCGGTGTCGCGCACCCCGATCCGCATCGCGCTCGGTGAACTCGAAAAGGAAG
GCTTGCTCGAGCGCCTGCCCACCCGCGGCTTTCGGGTTCGCCAGTTCACGGTAGACGAAATTGCCAACGCCGTCGATGTG
CGTGGCGTGCTCGAAGGAATGGCCGCCAGAACTGTGGCCGAGCGCGGCCTGAAGCCCCGCGTCCGGGACGAATTGCAGGC
TTGCGTGGACGAAGGCCGGCTGCTGCTGCAACAGGCCCAAGCCGCCGGCCATGTCATTGACGCGGCCCGCTGGGTGCCCA
TGAATGCGCGGTTTCACAATGCATTGGTGCAGGCAGCCGGCAACAGCACCCTCACCTCTGCGCTGGCCCATGTGAGCAAG
ACGCCCATGGCCGGAGCCGGCGCCCTGAGCCTCAACGGCATGCTGCCGCTGCTTGAATTCGGGTTCATCGCGCGGGCGCA
AAGCGACCATGAAGACGTACTGGCTGCGCTGCTCGCGGGTGAAGGCGGGCGGGCCGAAGCCCTGATGCGCGAGCATGCCC
ACCGCAGCCGCGACAACAAGCGCGAACTGATCCTGCGAATGCAAAAAACTTCACCCGGCTGA

Upstream 100 bases:

>100_bases
AATCCCTTATTTTTCGATTTATTGCATGCAATAATGCCTTGATTCCCTTTCCTCAGTAGGCGACTTCCGCCCCACACCGC
ATTTTCATGAAGGCCCGCTG

Downstream 100 bases:

>100_bases
GCCCGGCGGCATCGACGCGGTTTTCCGGATTTTTTCCGGATTTTCATCCAAAAACCCACTGCGGACGGGCGCAAAAAGCC
ATCACTTGAATGGCCACTTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSSQIDYTTRELRRKILSGEVAPGNRMVELELSAQLAVSRTPIRIALGELEKEGLLERLPTRGFRVRQFTVDEIANAVDV
RGVLEGMAARTVAERGLKPRVRDELQACVDEGRLLLQQAQAAGHVIDAARWVPMNARFHNALVQAAGNSTLTSALAHVSK
TPMAGAGALSLNGMLPLLEFGFIARAQSDHEDVLAALLAGEGGRAEALMREHAHRSRDNKRELILRMQKTSPG

Sequences:

>Translated_233_residues
MSSQIDYTTRELRRKILSGEVAPGNRMVELELSAQLAVSRTPIRIALGELEKEGLLERLPTRGFRVRQFTVDEIANAVDV
RGVLEGMAARTVAERGLKPRVRDELQACVDEGRLLLQQAQAAGHVIDAARWVPMNARFHNALVQAAGNSTLTSALAHVSK
TPMAGAGALSLNGMLPLLEFGFIARAQSDHEDVLAALLAGEGGRAEALMREHAHRSRDNKRELILRMQKTSPG
>Mature_232_residues
SSQIDYTTRELRRKILSGEVAPGNRMVELELSAQLAVSRTPIRIALGELEKEGLLERLPTRGFRVRQFTVDEIANAVDVR
GVLEGMAARTVAERGLKPRVRDELQACVDEGRLLLQQAQAAGHVIDAARWVPMNARFHNALVQAAGNSTLTSALAHVSKT
PMAGAGALSLNGMLPLLEFGFIARAQSDHEDVLAALLAGEGGRAEALMREHAHRSRDNKRELILRMQKTSPG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25400; Mature: 25268

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQIDYTTRELRRKILSGEVAPGNRMVELELSAQLAVSRTPIRIALGELEKEGLLERLP
CCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHCC
TRGFRVRQFTVDEIANAVDVRGVLEGMAARTVAERGLKPRVRDELQACVDEGRLLLQQAQ
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AAGHVIDAARWVPMNARFHNALVQAAGNSTLTSALAHVSKTPMAGAGALSLNGMLPLLEF
HHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHH
GFIARAQSDHEDVLAALLAGEGGRAEALMREHAHRSRDNKRELILRMQKTSPG
HHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSQIDYTTRELRRKILSGEVAPGNRMVELELSAQLAVSRTPIRIALGELEKEGLLERLP
CCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHCC
TRGFRVRQFTVDEIANAVDVRGVLEGMAARTVAERGLKPRVRDELQACVDEGRLLLQQAQ
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AAGHVIDAARWVPMNARFHNALVQAAGNSTLTSALAHVSKTPMAGAGALSLNGMLPLLEF
HHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHH
GFIARAQSDHEDVLAALLAGEGGRAEALMREHAHRSRDNKRELILRMQKTSPG
HHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]