| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is lldD [H]
Identifier: 91788909
GI number: 91788909
Start: 3216257
End: 3217396
Strand: Direct
Name: lldD [H]
Synonym: Bpro_3049
Alternate gene names: 91788909
Gene position: 3216257-3217396 (Clockwise)
Preceding gene: 91788908
Following gene: 91788910
Centisome position: 61.85
GC content: 64.65
Gene sequence:
>1140_bases ATGAGCGCAGTCAAAACAATCGCCGTACCTGCCGTCGAGCCCTTGCCGTCCGGTCTGGTCACACTGGCCGACCATGAGGC TCAAGCACGCGAGCGGCTGGATGACAACGCCTGGGCATATTTCAGTGGTGGTGCCGGGGACGAATTGACCCTGCGTGCCA ACCGCACGGCCTGGGACAACCTGACCTTGCTGCCCCGCGTACTGCGTCCGATGGCTGGTGGACACACCAAAATCGAGTTG ATGGGGCGCACACTGGCCCACCCGCTGTTATTGGCGCCGGTGGCTTACCAGCGCATGGCCCACCCTGACGGGGAGATCGC CACCGCCCATGCCGCGGCCTCCCAAGGCGCGGGCCTGGTGCTCAGCACGCAAGCCAGCGTGCCACTGGAAACCGTAGCCG AAGCTTTTGGCGCCTACGCTGAACGCGGGCCGTTATGGTTTCAGCTTTACTTCCAGCACGACCGCGGCTTCACGCGTGAA CTTGTTCAACGCGCGGAACATGCAGGTTACGAAGCGCTGGTACTTACCGTAGATGCACCAACCAGCGGTGCGCGTGACCG TGAGCGGCGCGTCGCCTTCAAGCTGCCGGCGGGAATCTCCGCCGTCAACCTTGCGCGCCTTTCACCGCAGCCCTCGAATC CCGGGCCTGGATACAACGCCCTGTTCGACGGCCTGCTCGCGCATGCGCCGACCTGGGCCGACGTCGAATGGCTCCAGTCC ACGACACGGTTACCGGTGGTACTCAAAGGCGTACTGCATCCCGAAGACGCGCGCCAGGCTGCAGCGCTGCGGCTTGCGGC CTTGATCGTCTCAAATCATGGCGGCCGCACACTGGACACCGCCCCTGCGACGGCCACCATACTGCCGCGCATTGCCGAAG CGCTGGCCGGTGATCTGCCGCTATTGGTGGATGGCGGAATCCGCCGTGGCACCGACGTGCTCAAGGCTATCGCCCTGGGG GCTCGTGCCGTGCTGGTCGGACGTCCGTATGTGTATGGCCTTGCCAATGCCGGAGCCTTGGGCGTAGCGCATGTGCTGCG CCTGTTGCGCGACGAACTGGAAATCGCCATGGCCCTGTGCGGCTGCGCCACGCTGGATCAGGCGACCCCCGAGCTTTTGT TCAAGGCCTGTTCACGGTAA
Upstream 100 bases:
>100_bases ACATGGCCCTGATGCAGCTTCGCCAGGAGCACGGCGAGAGCCAGGCCACCGTCGCGCTCACAGGCGCCTACCACAACCTG CTCCGCATGTGGGCCGACAC
Downstream 100 bases:
>100_bases AAGGGGAGATGCGTTTTAGCGTGAGCAGGCCCTAGTCAAATATCCTGAAATTTCCGTGGCTATTGCTCAGATATTGCAAA TGCGATAGATTCGCATTTAT
Product: FMN-dependent alpha-hydroxy acid dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MSAVKTIAVPAVEPLPSGLVTLADHEAQARERLDDNAWAYFSGGAGDELTLRANRTAWDNLTLLPRVLRPMAGGHTKIEL MGRTLAHPLLLAPVAYQRMAHPDGEIATAHAAASQGAGLVLSTQASVPLETVAEAFGAYAERGPLWFQLYFQHDRGFTRE LVQRAEHAGYEALVLTVDAPTSGARDRERRVAFKLPAGISAVNLARLSPQPSNPGPGYNALFDGLLAHAPTWADVEWLQS TTRLPVVLKGVLHPEDARQAAALRLAALIVSNHGGRTLDTAPATATILPRIAEALAGDLPLLVDGGIRRGTDVLKAIALG ARAVLVGRPYVYGLANAGALGVAHVLRLLRDELEIAMALCGCATLDQATPELLFKACSR
Sequences:
>Translated_379_residues MSAVKTIAVPAVEPLPSGLVTLADHEAQARERLDDNAWAYFSGGAGDELTLRANRTAWDNLTLLPRVLRPMAGGHTKIEL MGRTLAHPLLLAPVAYQRMAHPDGEIATAHAAASQGAGLVLSTQASVPLETVAEAFGAYAERGPLWFQLYFQHDRGFTRE LVQRAEHAGYEALVLTVDAPTSGARDRERRVAFKLPAGISAVNLARLSPQPSNPGPGYNALFDGLLAHAPTWADVEWLQS TTRLPVVLKGVLHPEDARQAAALRLAALIVSNHGGRTLDTAPATATILPRIAEALAGDLPLLVDGGIRRGTDVLKAIALG ARAVLVGRPYVYGLANAGALGVAHVLRLLRDELEIAMALCGCATLDQATPELLFKACSR >Mature_378_residues SAVKTIAVPAVEPLPSGLVTLADHEAQARERLDDNAWAYFSGGAGDELTLRANRTAWDNLTLLPRVLRPMAGGHTKIELM GRTLAHPLLLAPVAYQRMAHPDGEIATAHAAASQGAGLVLSTQASVPLETVAEAFGAYAERGPLWFQLYFQHDRGFTREL VQRAEHAGYEALVLTVDAPTSGARDRERRVAFKLPAGISAVNLARLSPQPSNPGPGYNALFDGLLAHAPTWADVEWLQST TRLPVVLKGVLHPEDARQAAALRLAALIVSNHGGRTLDTAPATATILPRIAEALAGDLPLLVDGGIRRGTDVLKAIALGA RAVLVGRPYVYGLANAGALGVAHVLRLLRDELEIAMALCGCATLDQATPELLFKACSR
Specific function: Unknown
COG id: COG1304
COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FMN hydroxy acid dehydrogenase domain [H]
Homologues:
Organism=Homo sapiens, GI11068137, Length=362, Percent_Identity=41.7127071823204, Blast_Score=271, Evalue=6e-73, Organism=Homo sapiens, GI54234014, Length=355, Percent_Identity=37.7464788732394, Blast_Score=245, Evalue=5e-65, Organism=Homo sapiens, GI7705393, Length=355, Percent_Identity=37.7464788732394, Blast_Score=245, Evalue=5e-65, Organism=Escherichia coli, GI1790033, Length=380, Percent_Identity=36.3157894736842, Blast_Score=219, Evalue=2e-58, Organism=Caenorhabditis elegans, GI193208036, Length=360, Percent_Identity=37.2222222222222, Blast_Score=234, Evalue=5e-62, Organism=Caenorhabditis elegans, GI32566217, Length=280, Percent_Identity=35, Blast_Score=164, Evalue=6e-41, Organism=Saccharomyces cerevisiae, GI6323587, Length=367, Percent_Identity=34.3324250681199, Blast_Score=214, Evalue=1e-56, Organism=Drosophila melanogaster, GI281363140, Length=359, Percent_Identity=42.0612813370474, Blast_Score=260, Evalue=1e-69, Organism=Drosophila melanogaster, GI78707190, Length=359, Percent_Identity=42.0612813370474, Blast_Score=260, Evalue=1e-69, Organism=Drosophila melanogaster, GI78707188, Length=359, Percent_Identity=42.0612813370474, Blast_Score=260, Evalue=1e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR012133 - InterPro: IPR000262 - InterPro: IPR008259 - InterPro: IPR020920 [H]
Pfam domain/function: PF01070 FMN_dh [H]
EC number: =1.1.2.3 [H]
Molecular weight: Translated: 40219; Mature: 40087
Theoretical pI: Translated: 7.12; Mature: 7.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVKTIAVPAVEPLPSGLVTLADHEAQARERLDDNAWAYFSGGAGDELTLRANRTAWDN CCCCCEEECCCCCCCCCCCEEECCCHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCC LTLLPRVLRPMAGGHTKIELMGRTLAHPLLLAPVAYQRMAHPDGEIATAHAAASQGAGLV HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCCEE LSTQASVPLETVAEAFGAYAERGPLWFQLYFQHDRGFTRELVQRAEHAGYEALVLTVDAP EECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECC TSGARDRERRVAFKLPAGISAVNLARLSPQPSNPGPGYNALFDGLLAHAPTWADVEWLQS CCCCCCHHCEEEEECCCCCCCEEHEECCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHH TTRLPVVLKGVLHPEDARQAAALRLAALIVSNHGGRTLDTAPATATILPRIAEALAGDLP CCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHCCCC LLVDGGIRRGTDVLKAIALGARAVLVGRPYVYGLANAGALGVAHVLRLLRDELEIAMALC EEECCCCCCHHHHHHHHHHCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH GCATLDQATPELLFKACSR HHHHHHCCCHHHHHHHHCC >Mature Secondary Structure SAVKTIAVPAVEPLPSGLVTLADHEAQARERLDDNAWAYFSGGAGDELTLRANRTAWDN CCCCEEECCCCCCCCCCCEEECCCHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCC LTLLPRVLRPMAGGHTKIELMGRTLAHPLLLAPVAYQRMAHPDGEIATAHAAASQGAGLV HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCCEE LSTQASVPLETVAEAFGAYAERGPLWFQLYFQHDRGFTRELVQRAEHAGYEALVLTVDAP EECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECC TSGARDRERRVAFKLPAGISAVNLARLSPQPSNPGPGYNALFDGLLAHAPTWADVEWLQS CCCCCCHHCEEEEECCCCCCCEEHEECCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHH TTRLPVVLKGVLHPEDARQAAALRLAALIVSNHGGRTLDTAPATATILPRIAEALAGDLP CCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHCCCC LLVDGGIRRGTDVLKAIALGARAVLVGRPYVYGLANAGALGVAHVLRLLRDELEIAMALC EEECCCCCCHHHHHHHHHHCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH GCATLDQATPELLFKACSR HHHHHHCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA