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The map label for this gene is yfdE [H]

Identifier: 91788853

GI number: 91788853

Start: 3151080

End: 3152012

Strand: Direct

Name: yfdE [H]

Synonym: Bpro_2993

Alternate gene names: 91788853

Gene position: 3151080-3152012 (Clockwise)

Preceding gene: 91788852

Following gene: 91788862

Centisome position: 60.59

GC content: 68.6

Gene sequence:

>933_bases
ATGCCGCCTTCTGATTTGCCCCCCACCCGCAAAACCCTCGCCCCACTTCAGTCGCTCAAGGGCGTGCGCGTGGTCAGCCT
CGCGCTCAACCTGCCCGGGCCTGCCGCGCTGATGCGCTGCCGCCAGATGGGCGCCAGCTGCGTGAAGCTGGAACCGCCCG
CGCCCCCGGGTGCACCCGCCGGCGCATCAGGCGATCCGATGAAGCAGTACAACGCCACGGCCTATGCCGCACTGCACGCC
GGCGTGCGCACGGCCGCGGCCGACCTCAAGACCGAACGTGGCCAGCAGCTGCTGCACCGCGAACTGGCCAAGGCCGATGT
GCTGCTCACCTCCTTCCGGCCCTCGGCACTGGTCAAACTGGGGCTCACATGGAAGGCACTGCACAAACAGCACCCGCACC
TGAGCCAGGTCGCCATTGTCGGCAGCCCGGGCGAGCGCGCCGAAGAGCCCGGCCACGACCTCACCTACCTGGCAGAAAAC
GACCTGGTCACCGGACTCGAATTGCCCGCAACGCTCTACGCCGACATGGGCGGCTCACAGATGGCCAGCGAGGCCGTGCT
GCAGGCCGTGCTGCACCAGCGCAGCAAAGCCAAAGGCCTATACCTTGAGGTGGCCCTTTCAGGCGCCGCAGGCTACCTGG
CCCTGCCGCGCGCCTGGGGCCTGACCCAGCCCGGCGCGGCCGTCGGCGGTGGCCACGCCGGCTACCGCGTCTACCCGTGC
AAGGATGGGCGGGTGACGGTGGCGGCACTGGAGCCGCATTTTGCGGCCAGCCTGTGCGCGGCTGCGGGCGTTGAGGGGTC
CGGCATGAAGGCGATGTTTGCGCCCGCGACGCACCAGGCGATAGCAAGCTGGCTGCTGGGCAAGACGCGCAAGGAGCTGG
ACAAGCTGGCGGCAGAGAAAGATATTCCGCTGCATACGCTGCCAAATTGGTAG

Upstream 100 bases:

>100_bases
CCCGGCACGAGGTGGGCTCACCGGGGACCGGCTGACAGGTGCCAGCGAACCACGCCGGGCTCACCCATAATCAGCCTCCT
GTCCCATCAGGTCCCCACCC

Downstream 100 bases:

>100_bases
TTGCCCACACGCCTAAAAAATATTGAGCTTGAGGCCGATTTCACTTTGCAAAAGCCAACATGAAACCGGCCTCCTCGCGT
ATCACTCAGCGCCAGGCCAG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MPPSDLPPTRKTLAPLQSLKGVRVVSLALNLPGPAALMRCRQMGASCVKLEPPAPPGAPAGASGDPMKQYNATAYAALHA
GVRTAAADLKTERGQQLLHRELAKADVLLTSFRPSALVKLGLTWKALHKQHPHLSQVAIVGSPGERAEEPGHDLTYLAEN
DLVTGLELPATLYADMGGSQMASEAVLQAVLHQRSKAKGLYLEVALSGAAGYLALPRAWGLTQPGAAVGGGHAGYRVYPC
KDGRVTVAALEPHFAASLCAAAGVEGSGMKAMFAPATHQAIASWLLGKTRKELDKLAAEKDIPLHTLPNW

Sequences:

>Translated_310_residues
MPPSDLPPTRKTLAPLQSLKGVRVVSLALNLPGPAALMRCRQMGASCVKLEPPAPPGAPAGASGDPMKQYNATAYAALHA
GVRTAAADLKTERGQQLLHRELAKADVLLTSFRPSALVKLGLTWKALHKQHPHLSQVAIVGSPGERAEEPGHDLTYLAEN
DLVTGLELPATLYADMGGSQMASEAVLQAVLHQRSKAKGLYLEVALSGAAGYLALPRAWGLTQPGAAVGGGHAGYRVYPC
KDGRVTVAALEPHFAASLCAAAGVEGSGMKAMFAPATHQAIASWLLGKTRKELDKLAAEKDIPLHTLPNW
>Mature_309_residues
PPSDLPPTRKTLAPLQSLKGVRVVSLALNLPGPAALMRCRQMGASCVKLEPPAPPGAPAGASGDPMKQYNATAYAALHAG
VRTAAADLKTERGQQLLHRELAKADVLLTSFRPSALVKLGLTWKALHKQHPHLSQVAIVGSPGERAEEPGHDLTYLAEND
LVTGLELPATLYADMGGSQMASEAVLQAVLHQRSKAKGLYLEVALSGAAGYLALPRAWGLTQPGAAVGGGHAGYRVYPCK
DGRVTVAALEPHFAASLCAAAGVEGSGMKAMFAPATHQAIASWLLGKTRKELDKLAAEKDIPLHTLPNW

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=301, Percent_Identity=25.9136212624585, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI266456254, Length=301, Percent_Identity=25.9136212624585, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI266458393, Length=264, Percent_Identity=26.8939393939394, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI266458397, Length=255, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI300863128, Length=313, Percent_Identity=23.3226837060703, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI300863124, Length=316, Percent_Identity=23.7341772151899, Blast_Score=75, Evalue=6e-14,
Organism=Escherichia coli, GI87082093, Length=270, Percent_Identity=22.2222222222222, Blast_Score=71, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=302, Percent_Identity=24.5033112582781, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=293, Percent_Identity=25.5972696245734, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24585488, Length=258, Percent_Identity=29.8449612403101, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24648431, Length=265, Percent_Identity=30.188679245283, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 32477; Mature: 32346

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPSDLPPTRKTLAPLQSLKGVRVVSLALNLPGPAALMRCRQMGASCVKLEPPAPPGAPA
CCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCC
GASGDPMKQYNATAYAALHAGVRTAAADLKTERGQQLLHRELAKADVLLTSFRPSALVKL
CCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEE
GLTWKALHKQHPHLSQVAIVGSPGERAEEPGHDLTYLAENDLVTGLELPATLYADMGGSQ
CCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCHH
MASEAVLQAVLHQRSKAKGLYLEVALSGAAGYLALPRAWGLTQPGAAVGGGHAGYRVYPC
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEC
KDGRVTVAALEPHFAASLCAAAGVEGSGMKAMFAPATHQAIASWLLGKTRKELDKLAAEK
CCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC
DIPLHTLPNW
CCCCCCCCCC
>Mature Secondary Structure 
PPSDLPPTRKTLAPLQSLKGVRVVSLALNLPGPAALMRCRQMGASCVKLEPPAPPGAPA
CCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCC
GASGDPMKQYNATAYAALHAGVRTAAADLKTERGQQLLHRELAKADVLLTSFRPSALVKL
CCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEE
GLTWKALHKQHPHLSQVAIVGSPGERAEEPGHDLTYLAENDLVTGLELPATLYADMGGSQ
CCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCHH
MASEAVLQAVLHQRSKAKGLYLEVALSGAAGYLALPRAWGLTQPGAAVGGGHAGYRVYPC
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEC
KDGRVTVAALEPHFAASLCAAAGVEGSGMKAMFAPATHQAIASWLLGKTRKELDKLAAEK
CCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC
DIPLHTLPNW
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]