| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is yceA [C]
Identifier: 91788797
GI number: 91788797
Start: 3098261
End: 3099211
Strand: Direct
Name: yceA [C]
Synonym: Bpro_2937
Alternate gene names: 91788797
Gene position: 3098261-3099211 (Clockwise)
Preceding gene: 91788796
Following gene: 91788798
Centisome position: 59.58
GC content: 64.67
Gene sequence:
>951_bases ATGCCTGAATTCCTGACTGCCGCCCTCTACAAATTCGTCGAGCTCCCCGACTTTGCCGAGCTCCAGGCGCCCCTGCTCGC CTGCTGCGAGTCCCATGGTGTCAAAGGCACCCTGCTGCTGGCCGCAGAAGGCATCAATGGCACGATTGCCGGCCCGGCCA AGGGGGTACATGCCGTGCTGGCTTTTTTGCGGCAGGATGCGCGCCTGACCACGCTGGAGCACAAGGAAGCCTGGGCAGCC CACATGCCGTTTTACCGGATGAAGGTGCGGCTCAAGCGGGAGATCGTCACACTGGGCGTGCCGGAGGTGCACCCCGCCCT GATGGCCGGCCAGTATGTCAAGCCCGAGGACTGGAACCACCTGCTCGACGACCCCGAGGTGGTGCTGGTTGACACGCGCA ACGACTATGAAGTGTCCATTGGCACCTTCCAGGGCGCCATCAACCCGGCCACCCGCAGCTTTTCGGAACTGCCGGGCTGG GTGGAGCGCGAGATGGCCGAAGGCGGCCGCCTGGCCCCGGTGGAAGGCAAAAAGCCCAAGGTGGCCATGTTCTGCACCGG CGGCATCCGTTGCGAGAAATCCACGGCCTTCCTGCGCTCCAAGGGATTTGACGAGGTTTACCACCTGGAAGGCGGCATCC TCAAATACTTGGAAACCGTGCCTGAAGCCCAAAGCTACTGGCAGGGCGAGTGCTTTGTGTTCGATGAACGCGTCTCGGTA GGCCACGGCCTGCACGCGGGCCACTACACGCTGTGCCGCTCCTGCCGCGATCCGCTGAGCGAGGAAGACCGGGCCTCCCC GCTGTTCGAGTTGGGGGTGAGCTGCGCGCGCTGCCATGCGACAACGACCGAGCAACAAAAGCAGGGCTACCGCGAGCGCC AGCGCCAGGTCGAGCTGGCCCAGGCGCGCCAGCAGCCGCATATTGGCGTGCGGCAGCAGGACAAGTCCTGA
Upstream 100 bases:
>100_bases CGCAGTCACTTCGCCAACAACACCACCGCCCCAATGGAGGGCACGAACCCGTTACGATTGAAGCTGCAGCGCTGTGAGGC GCAGCTTTATTTCACCTCCC
Downstream 100 bases:
>100_bases ACCTCACCGTGACGCCTGCCTCAACCGCCCCGGCAGACCGTCCCCTGCCGGTGTTGTACTCCTTTCGCCGCTGCCCCTAC GCCATGCGCGCGCGACTGGC
Product: rhodanese-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MPEFLTAALYKFVELPDFAELQAPLLACCESHGVKGTLLLAAEGINGTIAGPAKGVHAVLAFLRQDARLTTLEHKEAWAA HMPFYRMKVRLKREIVTLGVPEVHPALMAGQYVKPEDWNHLLDDPEVVLVDTRNDYEVSIGTFQGAINPATRSFSELPGW VEREMAEGGRLAPVEGKKPKVAMFCTGGIRCEKSTAFLRSKGFDEVYHLEGGILKYLETVPEAQSYWQGECFVFDERVSV GHGLHAGHYTLCRSCRDPLSEEDRASPLFELGVSCARCHATTTEQQKQGYRERQRQVELAQARQQPHIGVRQQDKS
Sequences:
>Translated_316_residues MPEFLTAALYKFVELPDFAELQAPLLACCESHGVKGTLLLAAEGINGTIAGPAKGVHAVLAFLRQDARLTTLEHKEAWAA HMPFYRMKVRLKREIVTLGVPEVHPALMAGQYVKPEDWNHLLDDPEVVLVDTRNDYEVSIGTFQGAINPATRSFSELPGW VEREMAEGGRLAPVEGKKPKVAMFCTGGIRCEKSTAFLRSKGFDEVYHLEGGILKYLETVPEAQSYWQGECFVFDERVSV GHGLHAGHYTLCRSCRDPLSEEDRASPLFELGVSCARCHATTTEQQKQGYRERQRQVELAQARQQPHIGVRQQDKS >Mature_315_residues PEFLTAALYKFVELPDFAELQAPLLACCESHGVKGTLLLAAEGINGTIAGPAKGVHAVLAFLRQDARLTTLEHKEAWAAH MPFYRMKVRLKREIVTLGVPEVHPALMAGQYVKPEDWNHLLDDPEVVLVDTRNDYEVSIGTFQGAINPATRSFSELPGWV EREMAEGGRLAPVEGKKPKVAMFCTGGIRCEKSTAFLRSKGFDEVYHLEGGILKYLETVPEAQSYWQGECFVFDERVSVG HGLHAGHYTLCRSCRDPLSEEDRASPLFELGVSCARCHATTTEQQKQGYRERQRQVELAQARQQPHIGVRQQDKS
Specific function: Unknown. [C]
COG id: COG1054
COG function: function code R; Predicted sulfurtransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 rhodanese domain [H]
Homologues:
Organism=Homo sapiens, GI111038120, Length=249, Percent_Identity=31.7269076305221, Blast_Score=121, Evalue=7e-28, Organism=Escherichia coli, GI1787294, Length=239, Percent_Identity=33.8912133891213, Blast_Score=126, Evalue=1e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001763 - InterPro: IPR020936 [H]
Pfam domain/function: PF00581 Rhodanese [H]
EC number: NA
Molecular weight: Translated: 35279; Mature: 35147
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEFLTAALYKFVELPDFAELQAPLLACCESHGVKGTLLLAAEGINGTIAGPAKGVHAVL CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEECCCHHHHHHHH AFLRQDARLTTLEHKEAWAAHMPFYRMKVRLKREIVTLGVPEVHPALMAGQYVKPEDWNH HHHHCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCH LLDDPEVVLVDTRNDYEVSIGTFQGAINPATRSFSELPGWVEREMAEGGRLAPVEGKKPK HCCCCCEEEEECCCCEEEEEEEECCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCC VAMFCTGGIRCEKSTAFLRSKGFDEVYHLEGGILKYLETVPEAQSYWQGECFVFDERVSV EEEEECCCEEECCHHHHHHHCCCCHHHHHCCHHHHHHHHCCCHHHHCCCCEEEEECCCCC GHGLHAGHYTLCRSCRDPLSEEDRASPLFELGVSCARCHATTTEQQKQGYRERQRQVELA CCCCCCCHHHHHHHHHCCCCCCHHCCHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHH QARQQPHIGVRQQDKS HHHCCCCCCCCCCCCC >Mature Secondary Structure PEFLTAALYKFVELPDFAELQAPLLACCESHGVKGTLLLAAEGINGTIAGPAKGVHAVL CHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEECCCHHHHHHHH AFLRQDARLTTLEHKEAWAAHMPFYRMKVRLKREIVTLGVPEVHPALMAGQYVKPEDWNH HHHHCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCH LLDDPEVVLVDTRNDYEVSIGTFQGAINPATRSFSELPGWVEREMAEGGRLAPVEGKKPK HCCCCCEEEEECCCCEEEEEEEECCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCC VAMFCTGGIRCEKSTAFLRSKGFDEVYHLEGGILKYLETVPEAQSYWQGECFVFDERVSV EEEEECCCEEECCHHHHHHHCCCCHHHHHCCHHHHHHHHCCCHHHHCCCCEEEEECCCCC GHGLHAGHYTLCRSCRDPLSEEDRASPLFELGVSCARCHATTTEQQKQGYRERQRQVELA CCCCCCCHHHHHHHHHCCCCCCHHCCHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHH QARQQPHIGVRQQDKS HHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA