| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91788706
Identifier: 91788706
GI number: 91788706
Start: 2999478
End: 3000545
Strand: Direct
Name: 91788706
Synonym: Bpro_2845
Alternate gene names: NA
Gene position: 2999478-3000545 (Clockwise)
Preceding gene: 91788705
Following gene: 91788708
Centisome position: 57.68
GC content: 63.48
Gene sequence:
>1068_bases ATGAGCGAGATTACACGAGTTGGCGTTGATCTGGCAAAGCGCGTCATCCAGGTTCACGCCGTCAATGCCGCCGGCCAACG GGTTACCAGCCGTGCGCTGGCCCGCGACAAGTTCATGGCCTGGTGTGCGCAATTGCCCGCAGGCTGCCTGGTTGCCATGG AAGCCAGCTCCAGCGCCCACCACTGGGCTCGCCGGCTGGTTGCATTGGGGCTGGATGCGCGCATCATCGCCGCCCACCTG GTGGCGCCCTACCGGCTGCAGGGCAAGTCTGGCAAGAACGACGCCAATGACGCCGCCGCCATCTGCGAAGCCGCCTCGCG CCCGCAAATGCATTTCGTGCCCGTCAAGAGCGTGGAGCAGCAAAGCATGCTGTGCATCCATCGCCTGCGCGAGGGCTTCA AGGCCGAGCGCACTGCCTGCGTCAACCGGATTCGCGGTCTGCTGGCCGAGTTCGGTCTGGTGTTCGCGCAAAAGCCCGCT GTCTTGCGTCAAGCTTTGCCCGACGTGATCGAAGATGCCTGCAACGAACTGGGCACCCTGGCACGCCTGGCGCTGCAACG CGCCTGGGCGCAGTGGCAGGAACTCGATGCCCATCTGGCCTGGTGCGACGAGCGCATCGCCGCCCACCTCAAAGTCAATG AGCAGGTACGCCAGGCGGAACAGCTCATGGGTGTAGGGCCTGTCACAGCCTCTGCGGTGGTGGCCACGGTGGGCGACTTC AAACAGTTTCGCAACGGCGCGCAGTTCGGCGCCTGGCTGGGGTTGACGCCACGGCAAAACTCCAGCGGTGGCAAAAACAA TCTCGGTGCCATCACCAAGCGCGGCGACATGTACTTGCGCATGCTGCTGATTCAAGGGGCCAAGTCGGCGGTGATGACGG CGCACCGGCGGGATGACCCGATTTCAAAATGGTTGCACCAACTGCGCGAGAAGTCAGGCTGGCAAAAGGCGGCTGTGGCC CTGGCCAACAAGAATGCACGCATTCTGTGGGCGGTGTTCGTGCGGGGCAAACCATTTGATGCGCGCCATGTGAGTGTGAA GCCAGGGATGGCTGCCGCAGCTGTGTAA
Upstream 100 bases:
>100_bases GGAACGGAATACGAAGGGACTTCCCACTTCCGGGTAACGGCATCGAGTGCCAAGATTGGTTTTGGAAAGTCAATCTGAAA CCTTTGGAAGGAGAAGTCCC
Downstream 100 bases:
>100_bases CGCCGCCCCAGAAAAATTGTTCGTTTCCCTGCAAGACGTGAGTTCGAAGATGCAGTAGACAGGTCAGACCGGCAGCGGGC AAGCTCGACTAACCCTTTGT
Product: transposase IS116/IS110/IS902
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 355; Mature: 354
Protein sequence:
>355_residues MSEITRVGVDLAKRVIQVHAVNAAGQRVTSRALARDKFMAWCAQLPAGCLVAMEASSSAHHWARRLVALGLDARIIAAHL VAPYRLQGKSGKNDANDAAAICEAASRPQMHFVPVKSVEQQSMLCIHRLREGFKAERTACVNRIRGLLAEFGLVFAQKPA VLRQALPDVIEDACNELGTLARLALQRAWAQWQELDAHLAWCDERIAAHLKVNEQVRQAEQLMGVGPVTASAVVATVGDF KQFRNGAQFGAWLGLTPRQNSSGGKNNLGAITKRGDMYLRMLLIQGAKSAVMTAHRRDDPISKWLHQLREKSGWQKAAVA LANKNARILWAVFVRGKPFDARHVSVKPGMAAAAV
Sequences:
>Translated_355_residues MSEITRVGVDLAKRVIQVHAVNAAGQRVTSRALARDKFMAWCAQLPAGCLVAMEASSSAHHWARRLVALGLDARIIAAHL VAPYRLQGKSGKNDANDAAAICEAASRPQMHFVPVKSVEQQSMLCIHRLREGFKAERTACVNRIRGLLAEFGLVFAQKPA VLRQALPDVIEDACNELGTLARLALQRAWAQWQELDAHLAWCDERIAAHLKVNEQVRQAEQLMGVGPVTASAVVATVGDF KQFRNGAQFGAWLGLTPRQNSSGGKNNLGAITKRGDMYLRMLLIQGAKSAVMTAHRRDDPISKWLHQLREKSGWQKAAVA LANKNARILWAVFVRGKPFDARHVSVKPGMAAAAV >Mature_354_residues SEITRVGVDLAKRVIQVHAVNAAGQRVTSRALARDKFMAWCAQLPAGCLVAMEASSSAHHWARRLVALGLDARIIAAHLV APYRLQGKSGKNDANDAAAICEAASRPQMHFVPVKSVEQQSMLCIHRLREGFKAERTACVNRIRGLLAEFGLVFAQKPAV LRQALPDVIEDACNELGTLARLALQRAWAQWQELDAHLAWCDERIAAHLKVNEQVRQAEQLMGVGPVTASAVVATVGDFK QFRNGAQFGAWLGLTPRQNSSGGKNNLGAITKRGDMYLRMLLIQGAKSAVMTAHRRDDPISKWLHQLREKSGWQKAAVAL ANKNARILWAVFVRGKPFDARHVSVKPGMAAAAV
Specific function: Required for the transposition of an insertion element (Potential) [H]
COG id: COG3547
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 20 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003583 - InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 38804; Mature: 38673
Theoretical pI: Translated: 10.86; Mature: 10.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEITRVGVDLAKRVIQVHAVNAAGQRVTSRALARDKFMAWCAQLPAGCLVAMEASSSAH CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH HWARRLVALGLDARIIAAHLVAPYRLQGKSGKNDANDAAAICEAASRPQMHFVPVKSVEQ HHHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHH QSMLCIHRLREGFKAERTACVNRIRGLLAEFGLVFAQKPAVLRQALPDVIEDACNELGTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH ARLALQRAWAQWQELDAHLAWCDERIAAHLKVNEQVRQAEQLMGVGPVTASAVVATVGDF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH KQFRNGAQFGAWLGLTPRQNSSGGKNNLGAITKRGDMYLRMLLIQGAKSAVMTAHRRDDP HHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCH ISKWLHQLREKSGWQKAAVALANKNARILWAVFVRGKPFDARHVSVKPGMAAAAV HHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEECCCCHHHCC >Mature Secondary Structure SEITRVGVDLAKRVIQVHAVNAAGQRVTSRALARDKFMAWCAQLPAGCLVAMEASSSAH CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH HWARRLVALGLDARIIAAHLVAPYRLQGKSGKNDANDAAAICEAASRPQMHFVPVKSVEQ HHHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHH QSMLCIHRLREGFKAERTACVNRIRGLLAEFGLVFAQKPAVLRQALPDVIEDACNELGTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH ARLALQRAWAQWQELDAHLAWCDERIAAHLKVNEQVRQAEQLMGVGPVTASAVVATVGDF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH KQFRNGAQFGAWLGLTPRQNSSGGKNNLGAITKRGDMYLRMLLIQGAKSAVMTAHRRDDP HHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCH ISKWLHQLREKSGWQKAAVALANKNARILWAVFVRGKPFDARHVSVKPGMAAAAV HHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEECCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]