The gene/protein map for NC_007948 is currently unavailable.
Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is dppD [H]

Identifier: 91788676

GI number: 91788676

Start: 2957813

End: 2958835

Strand: Direct

Name: dppD [H]

Synonym: Bpro_2814

Alternate gene names: 91788676

Gene position: 2957813-2958835 (Clockwise)

Preceding gene: 91788675

Following gene: 91788677

Centisome position: 56.88

GC content: 63.15

Gene sequence:

>1023_bases
ATGGCCCTGCTTGAAATAGAAAACCTGTCCGTCGAGTTTCCCTCGCAAAACGGGATCATGTATGCCGTTGACGGCGTCAG
CCTGTCGCTCGAAGAGGGCGAAGTGCTGGGTATCGTCGGTGAATCCGGCTCCGGTAAAAGCGTCACGATGATGGCGCTGA
TGGGGCTCGTGGCCTATCCGGGACGGGTGCGCGCCGACAAACTCCGCTTTGCCGGCCATGACCTGCTGGCCCTGTCGGCC
AGCGAGCGCAGCAAGCTCACCGGAAAAGACGTGGCCATGATTTTTCAGGAGCCCACAACCAGCCTGAACCCCTGCTTCAC
CATCGGCTTTCAAATCACCGAAACCCTGCGCCTGCATTTAGGCATGGACCGCAAGGCCGCCACGCGCAAGGCCATAGAAC
TGCTCGAGCAGGTTGGCATCAATTCGCCCGAAAGCCGCCTGAAAGCCTATCCGCACCAGCTGTCGGGCGGCATGAACCAG
CGCGTGATGATCGCCATGGCCATCGCCTGCAACCCGCGGCTGCTGATCGCCGACGAACCCACCACAGCCCTCGATGTAAC
CATCCAGGCGCAAATCCTGGACCTGCTGCGCAGCCTGCAAAAGGAGCGCGGCATGGCCCTGGTGCTCATCACCCACAACA
TGGGCGTGGTGTCTGAAATGGCGCAACGCGTGGCCGTCATGTATGCCGGCCAGATCATGGAAGAGCAAAGTTCCCACGCG
CTTTTCAACACTCCCCAGCACCCCTATACCGAAGCGCTGCTGTCAGCCCTGCCGGAGCGCAGCGATGGCAGCACCCGCCT
GGCGACCATCCCCGGCATGGTGCCCGGCCTGTACGACCGGCCCACCGGCTGCCTGTTTGCGCCGCGCTGCGCCTATGCCA
CCGAGCATTCGCGCAATGAGCGCCCGTTGCTACGCGCCTGGAAAGACGGCAAGGTGCGCTGCCACTATCCGCTGGGCGAC
CCCGACCGTGAAGCAGCCATACTGCGCGACACCCCGGTACTGGCCGCGGAGGAAGCGCCATGA

Upstream 100 bases:

>100_bases
CAAGTAACAGCGCGGAACCGGCTTCGCCGGGCCGCAGCTGTTGCCCCCGGAGGGGGGATCCGGCTACACGAAGTGAGCCG
AGAAGGGGGAGTTACTAAAT

Downstream 100 bases:

>100_bases
ACGCGCCACAAGACGCTTCTGCGCTGTCAGCGCTGGCTGCGCAACCCGTGGTGGAGGCCCGGGATCTCAAACGCGTTTAT
GAAATTCGGCGCGGCTTCAT

Product: oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MALLEIENLSVEFPSQNGIMYAVDGVSLSLEEGEVLGIVGESGSGKSVTMMALMGLVAYPGRVRADKLRFAGHDLLALSA
SERSKLTGKDVAMIFQEPTTSLNPCFTIGFQITETLRLHLGMDRKAATRKAIELLEQVGINSPESRLKAYPHQLSGGMNQ
RVMIAMAIACNPRLLIADEPTTALDVTIQAQILDLLRSLQKERGMALVLITHNMGVVSEMAQRVAVMYAGQIMEEQSSHA
LFNTPQHPYTEALLSALPERSDGSTRLATIPGMVPGLYDRPTGCLFAPRCAYATEHSRNERPLLRAWKDGKVRCHYPLGD
PDREAAILRDTPVLAAEEAP

Sequences:

>Translated_340_residues
MALLEIENLSVEFPSQNGIMYAVDGVSLSLEEGEVLGIVGESGSGKSVTMMALMGLVAYPGRVRADKLRFAGHDLLALSA
SERSKLTGKDVAMIFQEPTTSLNPCFTIGFQITETLRLHLGMDRKAATRKAIELLEQVGINSPESRLKAYPHQLSGGMNQ
RVMIAMAIACNPRLLIADEPTTALDVTIQAQILDLLRSLQKERGMALVLITHNMGVVSEMAQRVAVMYAGQIMEEQSSHA
LFNTPQHPYTEALLSALPERSDGSTRLATIPGMVPGLYDRPTGCLFAPRCAYATEHSRNERPLLRAWKDGKVRCHYPLGD
PDREAAILRDTPVLAAEEAP
>Mature_339_residues
ALLEIENLSVEFPSQNGIMYAVDGVSLSLEEGEVLGIVGESGSGKSVTMMALMGLVAYPGRVRADKLRFAGHDLLALSAS
ERSKLTGKDVAMIFQEPTTSLNPCFTIGFQITETLRLHLGMDRKAATRKAIELLEQVGINSPESRLKAYPHQLSGGMNQR
VMIAMAIACNPRLLIADEPTTALDVTIQAQILDLLRSLQKERGMALVLITHNMGVVSEMAQRVAVMYAGQIMEEQSSHAL
FNTPQHPYTEALLSALPERSDGSTRLATIPGMVPGLYDRPTGCLFAPRCAYATEHSRNERPLLRAWKDGKVRCHYPLGDP
DREAAILRDTPVLAAEEAP

Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=249, Percent_Identity=27.710843373494, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI116734710, Length=240, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI153792144, Length=219, Percent_Identity=26.9406392694064, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI171184400, Length=261, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI27262624, Length=213, Percent_Identity=24.8826291079812, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI27262626, Length=213, Percent_Identity=24.8826291079812, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI150417984, Length=236, Percent_Identity=25.8474576271186, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI9961250, Length=247, Percent_Identity=27.9352226720648, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4505771, Length=247, Percent_Identity=27.9352226720648, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI9961252, Length=247, Percent_Identity=27.9352226720648, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI9665248, Length=236, Percent_Identity=27.5423728813559, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI47078218, Length=211, Percent_Identity=27.0142180094787, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI45446740, Length=211, Percent_Identity=27.0142180094787, Blast_Score=65, Evalue=9e-11,
Organism=Homo sapiens, GI255708477, Length=269, Percent_Identity=24.907063197026, Blast_Score=65, Evalue=1e-10,
Organism=Homo sapiens, GI21536378, Length=234, Percent_Identity=29.4871794871795, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI1789963, Length=324, Percent_Identity=59.5679012345679, Blast_Score=408, Evalue=1e-115,
Organism=Escherichia coli, GI48994883, Length=318, Percent_Identity=45.9119496855346, Blast_Score=276, Evalue=1e-75,
Organism=Escherichia coli, GI145693107, Length=263, Percent_Identity=53.2319391634981, Blast_Score=262, Evalue=2e-71,
Organism=Escherichia coli, GI1787548, Length=327, Percent_Identity=42.2018348623853, Blast_Score=256, Evalue=1e-69,
Organism=Escherichia coli, GI1787759, Length=318, Percent_Identity=44.0251572327044, Blast_Score=255, Evalue=2e-69,
Organism=Escherichia coli, GI1788506, Length=257, Percent_Identity=50.9727626459144, Blast_Score=244, Evalue=6e-66,
Organism=Escherichia coli, GI1787500, Length=326, Percent_Identity=38.9570552147239, Blast_Score=214, Evalue=6e-57,
Organism=Escherichia coli, GI1789962, Length=319, Percent_Identity=35.1097178683386, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1787758, Length=321, Percent_Identity=37.6947040498442, Blast_Score=187, Evalue=7e-49,
Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=44.4444444444444, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI48994997, Length=259, Percent_Identity=35.5212355212355, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787547, Length=260, Percent_Identity=31.9230769230769, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1789891, Length=241, Percent_Identity=35.6846473029046, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1786398, Length=256, Percent_Identity=32.421875, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1788225, Length=259, Percent_Identity=32.8185328185328, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789032, Length=242, Percent_Identity=32.2314049586777, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1787712, Length=251, Percent_Identity=31.8725099601594, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787105, Length=231, Percent_Identity=33.7662337662338, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787089, Length=242, Percent_Identity=33.8842975206612, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1787029, Length=245, Percent_Identity=32.2448979591837, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789672, Length=257, Percent_Identity=30.3501945525292, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1786872, Length=219, Percent_Identity=32.8767123287671, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI87081834, Length=236, Percent_Identity=33.0508474576271, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87081791, Length=283, Percent_Identity=29.3286219081272, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1787370, Length=275, Percent_Identity=27.6363636363636, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1786703, Length=233, Percent_Identity=33.0472103004292, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788761, Length=244, Percent_Identity=30.327868852459, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1790162, Length=260, Percent_Identity=27.3076923076923, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788450, Length=269, Percent_Identity=27.1375464684015, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87081709, Length=253, Percent_Identity=26.8774703557312, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789991, Length=238, Percent_Identity=34.8739495798319, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=30.6034482758621, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788644, Length=174, Percent_Identity=34.4827586206897, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786319, Length=244, Percent_Identity=29.0983606557377, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789873, Length=211, Percent_Identity=30.8056872037915, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI48995001, Length=237, Percent_Identity=29.535864978903, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1787792, Length=234, Percent_Identity=29.9145299145299, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786345, Length=239, Percent_Identity=28.0334728033473, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786253, Length=219, Percent_Identity=28.7671232876712, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790190, Length=243, Percent_Identity=28.8065843621399, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790534, Length=231, Percent_Identity=28.1385281385281, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082267, Length=219, Percent_Identity=27.8538812785388, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1790467, Length=256, Percent_Identity=22.65625, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790525, Length=247, Percent_Identity=27.1255060728745, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787164, Length=223, Percent_Identity=30.0448430493274, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787112, Length=258, Percent_Identity=30.2325581395349, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788472, Length=230, Percent_Identity=25.2173913043478, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789593, Length=235, Percent_Identity=24.6808510638298, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789586, Length=241, Percent_Identity=27.8008298755187, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787972, Length=224, Percent_Identity=29.4642857142857, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1788002, Length=209, Percent_Identity=29.1866028708134, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786653, Length=261, Percent_Identity=28.3524904214559, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48994943, Length=260, Percent_Identity=25.3846153846154, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI87082268, Length=242, Percent_Identity=24.3801652892562, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=243, Percent_Identity=31.2757201646091, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI115533608, Length=217, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17543740, Length=238, Percent_Identity=27.7310924369748, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI193202349, Length=251, Percent_Identity=26.2948207171315, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=241, Percent_Identity=30.2904564315353, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=252, Percent_Identity=27.3809523809524, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=225, Percent_Identity=29.3333333333333, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115534520, Length=228, Percent_Identity=27.6315789473684, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17565938, Length=254, Percent_Identity=25.9842519685039, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=250, Percent_Identity=27.6, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=223, Percent_Identity=31.390134529148, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=228, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=228, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=228, Percent_Identity=31.5789473684211, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322980, Length=265, Percent_Identity=24.5283018867925, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=266, Percent_Identity=24.4360902255639, Blast_Score=64, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322640, Length=250, Percent_Identity=25.2, Blast_Score=64, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324498, Length=228, Percent_Identity=26.7543859649123, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17136662, Length=252, Percent_Identity=26.984126984127, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI116007328, Length=214, Percent_Identity=26.1682242990654, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28574150, Length=214, Percent_Identity=26.1682242990654, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643674, Length=228, Percent_Identity=23.2456140350877, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI85726357, Length=277, Percent_Identity=25.2707581227437, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 37081; Mature: 36950

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MALLEIENLSVEFPSQNGIMYAVDGVSLSLEEGEVLGIVGESGSGKSVTMMALMGLVAYP
CEEEEEECCEEECCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCEEHHHHHHHHHHCC
GRVRADKLRFAGHDLLALSASERSKLTGKDVAMIFQEPTTSLNPCFTIGFQITETLRLHL
CCCCHHHEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHEEEEHHHC
GMDRKAATRKAIELLEQVGINSPESRLKAYPHQLSGGMNQRVMIAMAIACNPRLLIADEP
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCCCCCEEEEEEEEECCCEEEEECCC
TTALDVTIQAQILDLLRSLQKERGMALVLITHNMGVVSEMAQRVAVMYAGQIMEEQSSHA
CCEEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
LFNTPQHPYTEALLSALPERSDGSTRLATIPGMVPGLYDRPTGCLFAPRCAYATEHSRNE
EECCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCHHCCCCCCC
RPLLRAWKDGKVRCHYPLGDPDREAAILRDTPVLAAEEAP
CCHHHCCCCCCEEEECCCCCCCCCCEEEECCCCEECCCCC
>Mature Secondary Structure 
ALLEIENLSVEFPSQNGIMYAVDGVSLSLEEGEVLGIVGESGSGKSVTMMALMGLVAYP
EEEEEECCEEECCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCEEHHHHHHHHHHCC
GRVRADKLRFAGHDLLALSASERSKLTGKDVAMIFQEPTTSLNPCFTIGFQITETLRLHL
CCCCHHHEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHEEEEHHHC
GMDRKAATRKAIELLEQVGINSPESRLKAYPHQLSGGMNQRVMIAMAIACNPRLLIADEP
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCCCCCEEEEEEEEECCCEEEEECCC
TTALDVTIQAQILDLLRSLQKERGMALVLITHNMGVVSEMAQRVAVMYAGQIMEEQSSHA
CCEEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
LFNTPQHPYTEALLSALPERSDGSTRLATIPGMVPGLYDRPTGCLFAPRCAYATEHSRNE
EECCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCHHCCCCCCC
RPLLRAWKDGKVRCHYPLGDPDREAAILRDTPVLAAEEAP
CCHHHCCCCCCEEEECCCCCCCCCCEEEECCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]