| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is frc [H]
Identifier: 91788665
GI number: 91788665
Start: 2944676
End: 2945923
Strand: Direct
Name: frc [H]
Synonym: Bpro_2803
Alternate gene names: 91788665
Gene position: 2944676-2945923 (Clockwise)
Preceding gene: 91788664
Following gene: 91788666
Centisome position: 56.63
GC content: 63.06
Gene sequence:
>1248_bases ATGAGCAAAGCGTTAGACGGCGTTCGCATACTTGATTTCACCCACGTCCAGTCGGGCCCCACCTGCACCCAGTTACTGGC TTGGTTCGGCGCCGACGTGATCAAGGTGGAGCGCGCTGGCGAAGGCGATGCGACGCGCGGGCAGCTGCGTGACATCCCCG GAGTGGACAGCCTGTATTTCACCATGCTGAACCACAACAAGCGCTCGATTACCCTGGATACCAAGAGTGCCAAGGGCCGG GAAGTCCTGGACAGGCTCATCAAGCAGTGCGACGTGATGGTTGAAAACTTCGCCCCCGGTGCGCTGGACCGCATGGGCAT CACCTGGGAACACATCCAGGCCATCAACCCCCGCATGATCGTGGCTTCGGTGAAAGGCTTCGGGCCAGGCCCCTACGAAG ACTGCAAGGTCTACGAAAACGTCGCCCAGTGCGCCGGCGGCTCCGCCTCGACCACGGGCTTCGACGACGGCCCGCCCATG GTCACCGGCGCCCAGATCGGCGACAGCGGCACCGGTCTGCACCTGGCGCTGGGCATTGTCGCGGCCCTCTACCAGCGCAA CACCACGGGCCGCGGCCAGAAGGTTCTGGCCCCGATGCAGGACGCCGTGCTGAACCTGTGCCGCGTCAAGCTGCGCGACC AGCAGCGCCTGGAGCGCACCCACACCATGCATGAATATCCGCAGTACCCGGATGGCAAATTCGGCGAAGCGGTGCCACGC GCGGGCAATGCTTCGGGTGGCGGCCAGCCCGGCTCGATCCTGAAGTGCAAGGGCTGGGAAACCGACCCCAACGCCTACAT TTACTTCATCACGCAAGCGGCCGTGTGGCCCGCCGTGTGCAAGGTGATCGGCGAGGAAGACTGGATCACCGACGAGGCGT TCGAAACCCCCGCGGCGCGTCTGCTGCACCTCAAGCCGATCTTCGCGCGCATCGAGCAATGGACCATGACCAAGACCAAG TTCGAGGCCATGGAAATCCTCAACAAGTACGACATTCCCTGCGGACCGATTCTGTCGATGAAGGAGATCGCCGAGGAACC TGCCCTGCGCGAAACCGGCACCATCGTCGAAGTTGACCATCCCACGCGCGGCAAATACCTGACCGTGGGCAATCCGATCA AGATGTCGGACAGCCCCACCGAAGTGACGCGCTCTCCCCTGCTGGGCGAACACACCGACGAGGTTCTGGCGCAATTGGGT TATGGCGCAGGGTATATCGCGGAATTGCGCGCAGAACGGGTGATCTGA
Upstream 100 bases:
>100_bases AGTGATTAACATAGGGGGATAAACCGGCCGCTTGGGCGTCCGGCACCATGGCTCAAACCGTGTACCAGTAACCGATTCAA CTTCCCAGCAGGATTTTTTC
Downstream 100 bases:
>100_bases ACCACGCGCAAAGTACCGGCGAGCCCGCGGCGCGAGCGTCCTGCGAGTCGATTCCAAACAAAATGCAAATGTAAGCGAGC CCCCATGAACCATCCCATCA
Product: formyl-coenzyme A transferase
Products: NA
Alternate protein names: Formyl-CoA transferase [H]
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MSKALDGVRILDFTHVQSGPTCTQLLAWFGADVIKVERAGEGDATRGQLRDIPGVDSLYFTMLNHNKRSITLDTKSAKGR EVLDRLIKQCDVMVENFAPGALDRMGITWEHIQAINPRMIVASVKGFGPGPYEDCKVYENVAQCAGGSASTTGFDDGPPM VTGAQIGDSGTGLHLALGIVAALYQRNTTGRGQKVLAPMQDAVLNLCRVKLRDQQRLERTHTMHEYPQYPDGKFGEAVPR AGNASGGGQPGSILKCKGWETDPNAYIYFITQAAVWPAVCKVIGEEDWITDEAFETPAARLLHLKPIFARIEQWTMTKTK FEAMEILNKYDIPCGPILSMKEIAEEPALRETGTIVEVDHPTRGKYLTVGNPIKMSDSPTEVTRSPLLGEHTDEVLAQLG YGAGYIAELRAERVI
Sequences:
>Translated_415_residues MSKALDGVRILDFTHVQSGPTCTQLLAWFGADVIKVERAGEGDATRGQLRDIPGVDSLYFTMLNHNKRSITLDTKSAKGR EVLDRLIKQCDVMVENFAPGALDRMGITWEHIQAINPRMIVASVKGFGPGPYEDCKVYENVAQCAGGSASTTGFDDGPPM VTGAQIGDSGTGLHLALGIVAALYQRNTTGRGQKVLAPMQDAVLNLCRVKLRDQQRLERTHTMHEYPQYPDGKFGEAVPR AGNASGGGQPGSILKCKGWETDPNAYIYFITQAAVWPAVCKVIGEEDWITDEAFETPAARLLHLKPIFARIEQWTMTKTK FEAMEILNKYDIPCGPILSMKEIAEEPALRETGTIVEVDHPTRGKYLTVGNPIKMSDSPTEVTRSPLLGEHTDEVLAQLG YGAGYIAELRAERVI >Mature_414_residues SKALDGVRILDFTHVQSGPTCTQLLAWFGADVIKVERAGEGDATRGQLRDIPGVDSLYFTMLNHNKRSITLDTKSAKGRE VLDRLIKQCDVMVENFAPGALDRMGITWEHIQAINPRMIVASVKGFGPGPYEDCKVYENVAQCAGGSASTTGFDDGPPMV TGAQIGDSGTGLHLALGIVAALYQRNTTGRGQKVLAPMQDAVLNLCRVKLRDQQRLERTHTMHEYPQYPDGKFGEAVPRA GNASGGGQPGSILKCKGWETDPNAYIYFITQAAVWPAVCKVIGEEDWITDEAFETPAARLLHLKPIFARIEQWTMTKTKF EAMEILNKYDIPCGPILSMKEIAEEPALRETGTIVEVDHPTRGKYLTVGNPIKMSDSPTEVTRSPLLGEHTDEVLAQLGY GAGYIAELRAERVI
Specific function: Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate [H]
COG id: COG1804
COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]
Homologues:
Organism=Homo sapiens, GI300863128, Length=420, Percent_Identity=30.952380952381, Blast_Score=184, Evalue=1e-46, Organism=Homo sapiens, GI300863124, Length=446, Percent_Identity=29.1479820627803, Blast_Score=170, Evalue=3e-42, Organism=Homo sapiens, GI42794625, Length=422, Percent_Identity=27.2511848341232, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI266456254, Length=422, Percent_Identity=27.2511848341232, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI300863126, Length=152, Percent_Identity=42.7631578947368, Blast_Score=118, Evalue=8e-27, Organism=Homo sapiens, GI13376042, Length=446, Percent_Identity=25.5605381165919, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI266458393, Length=215, Percent_Identity=32.093023255814, Blast_Score=99, Evalue=7e-21, Organism=Homo sapiens, GI266458397, Length=215, Percent_Identity=32.093023255814, Blast_Score=99, Evalue=7e-21, Organism=Homo sapiens, GI266458395, Length=126, Percent_Identity=35.7142857142857, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI42822893, Length=126, Percent_Identity=35.7142857142857, Blast_Score=78, Evalue=2e-14, Organism=Escherichia coli, GI1788717, Length=416, Percent_Identity=62.0192307692308, Blast_Score=516, Evalue=1e-147, Organism=Escherichia coli, GI87082093, Length=394, Percent_Identity=30.2030456852792, Blast_Score=181, Evalue=6e-47, Organism=Escherichia coli, GI1786222, Length=423, Percent_Identity=25.0591016548463, Blast_Score=78, Evalue=9e-16, Organism=Drosophila melanogaster, GI24648431, Length=417, Percent_Identity=32.8537170263789, Blast_Score=201, Evalue=6e-52, Organism=Drosophila melanogaster, GI24585488, Length=197, Percent_Identity=30.4568527918782, Blast_Score=95, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003673 - InterPro: IPR017659 [H]
Pfam domain/function: PF02515 CoA_transf_3 [H]
EC number: =2.8.3.16 [H]
Molecular weight: Translated: 45433; Mature: 45302
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKALDGVRILDFTHVQSGPTCTQLLAWFGADVIKVERAGEGDATRGQLRDIPGVDSLYF CCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCHHCCCCCCHHHHH TMLNHNKRSITLDTKSAKGREVLDRLIKQCDVMVENFAPGALDRMGITWEHIQAINPRMI HEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHCCCEEE VASVKGFGPGPYEDCKVYENVAQCAGGSASTTGFDDGPPMVTGAQIGDSGTGLHLALGIV EEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEECCCCCHHHHHHHHH AALYQRNTTGRGQKVLAPMQDAVLNLCRVKLRDQQRLERTHTMHEYPQYPDGKFGEAVPR HHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC AGNASGGGQPGSILKCKGWETDPNAYIYFITQAAVWPAVCKVIGEEDWITDEAFETPAAR CCCCCCCCCCCCEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCHHHCCHHHH LLHLKPIFARIEQWTMTKTKFEAMEILNKYDIPCGPILSMKEIAEEPALRETGTIVEVDH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCEEEECC PTRGKYLTVGNPIKMSDSPTEVTRSPLLGEHTDEVLAQLGYGAGYIAELRAERVI CCCCCEEECCCCEECCCCCHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCC >Mature Secondary Structure SKALDGVRILDFTHVQSGPTCTQLLAWFGADVIKVERAGEGDATRGQLRDIPGVDSLYF CCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCHHCCCCCCHHHHH TMLNHNKRSITLDTKSAKGREVLDRLIKQCDVMVENFAPGALDRMGITWEHIQAINPRMI HEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHCCCEEE VASVKGFGPGPYEDCKVYENVAQCAGGSASTTGFDDGPPMVTGAQIGDSGTGLHLALGIV EEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEECCCCCHHHHHHHHH AALYQRNTTGRGQKVLAPMQDAVLNLCRVKLRDQQRLERTHTMHEYPQYPDGKFGEAVPR HHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC AGNASGGGQPGSILKCKGWETDPNAYIYFITQAAVWPAVCKVIGEEDWITDEAFETPAAR CCCCCCCCCCCCEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCHHHCCHHHH LLHLKPIFARIEQWTMTKTKFEAMEILNKYDIPCGPILSMKEIAEEPALRETGTIVEVDH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCEEEECC PTRGKYLTVGNPIKMSDSPTEVTRSPLLGEHTDEVLAQLGYGAGYIAELRAERVI CCCCCEEECCCCEECCCCCHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA