| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yciH [C]
Identifier: 91788596
GI number: 91788596
Start: 2878401
End: 2878826
Strand: Reverse
Name: yciH [C]
Synonym: Bpro_2734
Alternate gene names: 91788596
Gene position: 2878826-2878401 (Counterclockwise)
Preceding gene: 91788597
Following gene: 91788595
Centisome position: 55.36
GC content: 61.97
Gene sequence:
>426_bases GTGGCCGATTCGTCCGGCCTGGTTTTTTTCATCGCTGCCAAGCTCAACCCATTCATGAAAAGCAATCCATCCGGCGGACT CGTCTATTCCACCGACGCGGGACGAATGTGCCCCGATTGCCGCAAGCCCGTGGCGGGCTGCGTTTGCCGTCAGCTCAAGG CCATGGCAACATTGGACGGAAAGTCCGGCGGTGTGGTCCTTGTCTCCAGGGAGAGCAAAGGCCGTGGCGGGAAAAGCGTG ACTGTGGTGAAAGGGCTGCCGCTGGATGCACTGGCGCTGGCCCAGCTGGGAAAGCAGCTCAAGACAGCGTGCGGCTCGGG TGGCACGGTGAAGGACGGCGTGATCGAGGTGCAGGGCGAGCACTGCGAGCAGGTGATGCAGGCGCTGAAGAAGCAGGGTT ATGTCGTCAAGCGGAGCGGTGGTTAG
Upstream 100 bases:
>100_bases GTACTTATCGAAGTACTTATCGAAGTGCCCTGTCGGGACGCAAGCCGGGCGGTTGCGAAGGCGCTGCACCGGCCGGCAGG TTTCAAGCCTTCACTGCACC
Downstream 100 bases:
>100_bases TGAACCCCGAAGACCTGCAGCTCCTGCTGACCCGCGAAATGCCTTATGGCAAATACAAGGGGCGGCTGATTGCCGACTTG CCGGGCAACTACCTCAACTG
Product: translation initiation factor 1 (eIF-1/SUI1)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 141; Mature: 140
Protein sequence:
>141_residues MADSSGLVFFIAAKLNPFMKSNPSGGLVYSTDAGRMCPDCRKPVAGCVCRQLKAMATLDGKSGGVVLVSRESKGRGGKSV TVVKGLPLDALALAQLGKQLKTACGSGGTVKDGVIEVQGEHCEQVMQALKKQGYVVKRSGG
Sequences:
>Translated_141_residues MADSSGLVFFIAAKLNPFMKSNPSGGLVYSTDAGRMCPDCRKPVAGCVCRQLKAMATLDGKSGGVVLVSRESKGRGGKSV TVVKGLPLDALALAQLGKQLKTACGSGGTVKDGVIEVQGEHCEQVMQALKKQGYVVKRSGG >Mature_140_residues ADSSGLVFFIAAKLNPFMKSNPSGGLVYSTDAGRMCPDCRKPVAGCVCRQLKAMATLDGKSGGVVLVSRESKGRGGKSVT VVKGLPLDALALAQLGKQLKTACGSGGTVKDGVIEVQGEHCEQVMQALKKQGYVVKRSGG
Specific function: Unknown
COG id: COG0023
COG function: function code J; Translation initiation factor 1 (eIF-1/SUI1) and related proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SUI1 family [H]
Homologues:
Organism=Escherichia coli, GI87081867, Length=121, Percent_Identity=38.8429752066116, Blast_Score=72, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005872 - InterPro: IPR001950 [H]
Pfam domain/function: PF01253 SUI1 [H]
EC number: NA
Molecular weight: Translated: 14545; Mature: 14414
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: PS50296 SUI1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 7.8 %Cys+Met (Translated Protein) 4.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADSSGLVFFIAAKLNPFMKSNPSGGLVYSTDAGRMCPDCRKPVAGCVCRQLKAMATLDG CCCCCCEEEEEEECCCHHHCCCCCCCEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHCCC KSGGVVLVSRESKGRGGKSVTVVKGLPLDALALAQLGKQLKTACGSGGTVKDGVIEVQGE CCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCH HCEQVMQALKKQGYVVKRSGG HHHHHHHHHHHCCEEEEECCC >Mature Secondary Structure ADSSGLVFFIAAKLNPFMKSNPSGGLVYSTDAGRMCPDCRKPVAGCVCRQLKAMATLDG CCCCCEEEEEEECCCHHHCCCCCCCEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHCCC KSGGVVLVSRESKGRGGKSVTVVKGLPLDALALAQLGKQLKTACGSGGTVKDGVIEVQGE CCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCH HCEQVMQALKKQGYVVKRSGG HHHHHHHHHHHCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]