| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yegD [H]
Identifier: 91788513
GI number: 91788513
Start: 2789959
End: 2791221
Strand: Reverse
Name: yegD [H]
Synonym: Bpro_2651
Alternate gene names: 91788513
Gene position: 2791221-2789959 (Counterclockwise)
Preceding gene: 91788514
Following gene: 91788512
Centisome position: 53.67
GC content: 63.26
Gene sequence:
>1263_bases TTGGCTGACGCATGCGGGATTGACTTCGGAACGTCCAACTCCACCACGGGCTGGAGGCGGCCCGGGCAAAGCGCTCCATC CTCTCTGTTGTTGCCGCTCGAAGACGGCAAGCTGACGCTGCCCTCGGTGGTGTTTTTCCACGCCGAAGATGCCCACGTCA GCTATGGGCGTGCCGCACTGGCGGACTATCTGGCGGGGCATGAGGGCCGACTGATGCGTTCCCTCAAGAGCCTGCTCGGC ACCTCGATGATGGACGATCACACCGAGGTGATGGGCCGGGCCTTGCCGTTCAGGGATTTGCTGGCGCAGTTTGTGGGCGA ACTCAAGCGCCGTGCCGAGCACGCGGCCGGGCGTGAATTCACCCGTGCCGTGCTTGGCCGGCCGGTATTTTTTGTGGATG ACGATCACAAGGCTGACCTGCGGGCCGAACGCACGCTGGAAGAGATTGCCCGCAAGGCCGGCCTGCGCGAGATCGCTTTC CAGTACGAACCGATTGCGGCAGCCTTTGACTATGAGTCGCAAATCACCCGTGAAGAACTGGTGCTGGTGGTTGACATTGG CGGCGGTACCTCCGACTTTGCGTTGATCCGTCTGTCACCCGAGCGCGCCGGCCGCCCGGAGCGGCGCGACGACATCCTGG CCAGCGGTGGCGTGCATATTGGGGGCACGGATTTCGACAAGTACCTGAGCCTTTCCAGCATGATGCCGATCCTGGGGCTT GGCAGCCTGCTGAAAAGCGGCCGCGAAGTACCGTCAGCACAGTACTTCAACCTCGCGACCTGGCACACCATCAACCAGGC CTACAGCAAAAAGTCCTGGTCGCAGATCAGCGACATGCACCGCGAAGCGCGTGACAAGGTCAAGCTGGAGCGGCTGCAGA GCGTGGTCAGGCAGCGCGCCGGCCACTGGCTCGCGCTGCAGGTTGAAGAGGCCAAGATCACCCTGTCGAACGCAGCCGAG GCGCAGATTGACATCGGCCGCATCGCTGCCGGGGAGACGGTGACGCTGCAACGGGCGGATCTGGATGGTGCCATCGAGGG GCTAGTGGCTTCCGTAGCGCAAACCGTGGCACGGCTGCTGCGTGACGCCGGTGTCGCGGCCTCAGGCATTGACACGGTGT TTTTCACGGGTGGCTCCAGCGGCGTACCTTTGCTGCGCGAGAGAATTCTTGCGCTGATGCCCGACGCCCATTGGGTGGAA GGTGACTTGTTCGGCAGCATTGGAGCCGGGCTTGCGCTGGATGCCAGCCGCAAGTTTGCCTAG
Upstream 100 bases:
>100_bases TGGCGCAGGTCCGTGTGCTGCCGTCCTTCAAGCTCAGCCGCGCCAGCGCGGTGACCTGGGTCGAGAACGACTTTCGCAGG CCGGCTGAGCGGTGAGTACC
Downstream 100 bases:
>100_bases CAGGGCACCTAAAGCACTGATAGGTCAAGAAGGGCAAGAGCACCTGATCGAGCCCGGAGAGTCCGGAGTTGCGCAGCATT CCTCGCCCTCAAGACTGAAC
Product: putative heat shock protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MADACGIDFGTSNSTTGWRRPGQSAPSSLLLPLEDGKLTLPSVVFFHAEDAHVSYGRAALADYLAGHEGRLMRSLKSLLG TSMMDDHTEVMGRALPFRDLLAQFVGELKRRAEHAAGREFTRAVLGRPVFFVDDDHKADLRAERTLEEIARKAGLREIAF QYEPIAAAFDYESQITREELVLVVDIGGGTSDFALIRLSPERAGRPERRDDILASGGVHIGGTDFDKYLSLSSMMPILGL GSLLKSGREVPSAQYFNLATWHTINQAYSKKSWSQISDMHREARDKVKLERLQSVVRQRAGHWLALQVEEAKITLSNAAE AQIDIGRIAAGETVTLQRADLDGAIEGLVASVAQTVARLLRDAGVAASGIDTVFFTGGSSGVPLLRERILALMPDAHWVE GDLFGSIGAGLALDASRKFA
Sequences:
>Translated_420_residues MADACGIDFGTSNSTTGWRRPGQSAPSSLLLPLEDGKLTLPSVVFFHAEDAHVSYGRAALADYLAGHEGRLMRSLKSLLG TSMMDDHTEVMGRALPFRDLLAQFVGELKRRAEHAAGREFTRAVLGRPVFFVDDDHKADLRAERTLEEIARKAGLREIAF QYEPIAAAFDYESQITREELVLVVDIGGGTSDFALIRLSPERAGRPERRDDILASGGVHIGGTDFDKYLSLSSMMPILGL GSLLKSGREVPSAQYFNLATWHTINQAYSKKSWSQISDMHREARDKVKLERLQSVVRQRAGHWLALQVEEAKITLSNAAE AQIDIGRIAAGETVTLQRADLDGAIEGLVASVAQTVARLLRDAGVAASGIDTVFFTGGSSGVPLLRERILALMPDAHWVE GDLFGSIGAGLALDASRKFA >Mature_419_residues ADACGIDFGTSNSTTGWRRPGQSAPSSLLLPLEDGKLTLPSVVFFHAEDAHVSYGRAALADYLAGHEGRLMRSLKSLLGT SMMDDHTEVMGRALPFRDLLAQFVGELKRRAEHAAGREFTRAVLGRPVFFVDDDHKADLRAERTLEEIARKAGLREIAFQ YEPIAAAFDYESQITREELVLVVDIGGGTSDFALIRLSPERAGRPERRDDILASGGVHIGGTDFDKYLSLSSMMPILGLG SLLKSGREVPSAQYFNLATWHTINQAYSKKSWSQISDMHREARDKVKLERLQSVVRQRAGHWLALQVEEAKITLSNAAEA QIDIGRIAAGETVTLQRADLDGAIEGLVASVAQTVARLLRDAGVAASGIDTVFFTGGSSGVPLLRERILALMPDAHWVEG DLFGSIGAGLALDASRKFA
Specific function: Unknown
COG id: COG0443
COG function: function code O; Molecular chaperone
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the heat shock protein 70 family [H]
Homologues:
Organism=Homo sapiens, GI48928056, Length=433, Percent_Identity=24.9422632794457, Blast_Score=84, Evalue=3e-16, Organism=Escherichia coli, GI87082035, Length=457, Percent_Identity=30.4157549234136, Blast_Score=191, Evalue=7e-50, Organism=Escherichia coli, GI1786196, Length=418, Percent_Identity=24.4019138755981, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1788875, Length=433, Percent_Identity=27.0207852193995, Blast_Score=85, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17507981, Length=413, Percent_Identity=24.9394673123487, Blast_Score=72, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6322426, Length=410, Percent_Identity=23.4146341463415, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018181 - InterPro: IPR001023 - InterPro: IPR013126 [H]
Pfam domain/function: PF00012 HSP70 [H]
EC number: NA
Molecular weight: Translated: 45642; Mature: 45511
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: PS01036 HSP70_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADACGIDFGTSNSTTGWRRPGQSAPSSLLLPLEDGKLTLPSVVFFHAEDAHVSYGRAAL CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEECCEEEEEECCCCCCHHHHHHH ADYLAGHEGRLMRSLKSLLGTSMMDDHTEVMGRALPFRDLLAQFVGELKRRAEHAAGREF HHHHCCCCHHHHHHHHHHHCCHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHH TRAVLGRPVFFVDDDHKADLRAERTLEEIARKAGLREIAFQYEPIAAAFDYESQITREEL HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCHHEEECCHHHCCHHHE VLVVDIGGGTSDFALIRLSPERAGRPERRDDILASGGVHIGGTDFDKYLSLSSMMPILGL EEEEECCCCCCCEEEEEECHHHCCCCCHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHH GSLLKSGREVPSAQYFNLATWHTINQAYSKKSWSQISDMHREARDKVKLERLQSVVRQRA HHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GHWLALQVEEAKITLSNAAEAQIDIGRIAAGETVTLQRADLDGAIEGLVASVAQTVARLL CCEEEEEEECEEEEECCCCCCEEEHHEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH RDAGVAASGIDTVFFTGGSSGVPLLRERILALMPDAHWVEGDLFGSIGAGLALDASRKFA HHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCHHHCCCCCEEECCCCCCC >Mature Secondary Structure ADACGIDFGTSNSTTGWRRPGQSAPSSLLLPLEDGKLTLPSVVFFHAEDAHVSYGRAAL CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEECCEEEEEECCCCCCHHHHHHH ADYLAGHEGRLMRSLKSLLGTSMMDDHTEVMGRALPFRDLLAQFVGELKRRAEHAAGREF HHHHCCCCHHHHHHHHHHHCCHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHH TRAVLGRPVFFVDDDHKADLRAERTLEEIARKAGLREIAFQYEPIAAAFDYESQITREEL HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCHHEEECCHHHCCHHHE VLVVDIGGGTSDFALIRLSPERAGRPERRDDILASGGVHIGGTDFDKYLSLSSMMPILGL EEEEECCCCCCCEEEEEECHHHCCCCCHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHH GSLLKSGREVPSAQYFNLATWHTINQAYSKKSWSQISDMHREARDKVKLERLQSVVRQRA HHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GHWLALQVEEAKITLSNAAEAQIDIGRIAAGETVTLQRADLDGAIEGLVASVAQTVARLL CCEEEEEEECEEEEECCCCCCEEEHHEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH RDAGVAASGIDTVFFTGGSSGVPLLRERILALMPDAHWVEGDLFGSIGAGLALDASRKFA HHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCHHHCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 6094528; 7940673; 7984428 [H]